Publications of the MPI

Max Planck Institute of Molecular Plant Physiology

Journal Article (191)

151.

Journal Article

Kleinschmidt, D.; Forner, J.: Plant genetic engineering makes treasure from trash. The Science Breaker 9 (1) (2023)

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152.

Journal Article

Shi, Y.; Zhang, Y.; Sun, Y.; Xie, Z.; Luo, Y.; Long, Q.; Feng, J.; Liu, X.; Wang, B.; He, D. et al.; Ren, J.; Guo, P.; Xing, J.; He, L.; Fernie, A. R.; Chen, W.; Liu, X.; Luo, Y.; Jin, C.; Luo, J.: Natural variations of OsAUX5, a target gene of OsWRKY78, control the neutral essential amino acid content in rice grains. Molecular Plant 16 (2), pp. 322 - 336 (2023)

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153.

Journal Article

Almeida, O.A.C.; de Araujo, N.O.; Mulato, A.T.N.; Persinoti, G.F.; Sforça, M.L.; Calderan-Rodrigues, M.J.; Oliveira, J.V.D.C.: Bacterial volatile organic compounds (VOCs) promote growth and induce metabolic changes in rice. Frontiers in Plant Science 13, 1056082 (2023)

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154.

Journal Article

Cerqueira, J. V. A.; Zhu, F.; Mendes, K.; Nunes-Nesi, A.; Martins, S. C. V.; Benedito, V.; Fernie, A. R.; Zsögön, A.: Promoter replacement of ANTHOCYANIN1 induces anthocyanin accumulation and triggers shade avoidance response through developmental, physiological and metabolic reprogramming in tomato. Horticulture Research 10 (2), uhac254 (2023)

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155.

Journal Article

Chen, Y.; Chao, Z.-F.; Jin, M.; Wang, Y.-L.; Li, Y.; Wu, J.-C.; Xiao, Y.; Peng, Y.; Lv, Q.-Y.; Gui, S. et al.; Wang, X.; Han, M.-L.; Fernie, A. R.; Chao, D.-Y.; Yan, J.: A heavy metal transporter gene ZmHMA3a promises safe agricultural production on cadmium-polluted arable land. Journal of Genetics and Genomics 50 (2), p. 130-134 (2023)

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156.

Journal Article

Gui, S.; Martinez Rivas, F.J.; Wen, W.; Meng, M.; Yan, J.; Usadel, B.; Fernie, A. R.: Going broad and deep: sequencing driven insights into plant physiology, evolution and crop domestication. The Plant Journal 113 (3), pp. 446 - 459 (2023)

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157.

Journal Article

Hu, X.; Fernie, A. R.; Yan, J.: Deep learning in regulatory genomics: from identification to design. Current Opinion in Biotechnology 79, 102887 (2023)

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158.

Journal Article

Li, H.; Fernie, A. R.; Yang, X.: Using systems metabolic engineering strategies for high-oil maize breeding. Current Opinion in Biotechnology 79, 102847 (2023)

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159.

Journal Article

Liu, Y.; Nour-Eldin, H.H.; Zhang, L.; Li, Z.; Fernie, A. R.; Ren, M.: Biotechnological detoxification: an unchanging source–sink balance strategy for crop improvement. Trends in Plant Science 28 (2), pp. 135 - 138 (2023)

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160.

Journal Article

Silva, S.F.; Miranda, M.T.; Cunha, C.P.; Domingues-Jr, A.P.; Aricetti, J.A.; Caldana, C.; Machado, E.C.; Ribeiro, R.V.: Metabolic profiling of drought tolerance: Revealing how citrus rootstocks modulate plant metabolism under varying water availability. Environmental and Experimental Botany 206, 105169 (2023)

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161.

Journal Article

Vidal-Meireles, A.; Kuntam, S.; Széles, E.; Tóth, D.; Neupert, J.; Bock, R.; Tóth, S. Z.: The lifetime of the oxygen-evolving complex subunit PSBO depends on light intensity and carbon availability in Chlamydomonas. Plant, Cell and Environment 46 (2), pp. 422 - 439 (2023)

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162.

Journal Article

Wu, M.; Zhang, Q.; Dong, Y.; Wang, Z.; Zhan, W.; Ke, Z.; Li, S.; He, L.; Ruf, S.; Bock, R. et al.; Zhang, J.: Transplastomic tomatoes expressing double-stranded RNA against a conserved gene are efficiently protected from multiple spider mites. New Phytologist 237 (4), pp. 1363 - 1373 (2023)

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163.

Journal Article

Xu, W.; Sato, H.; Bente, H.; Santos-González, J.; Köhler, C.: Endosperm cellularization failure induces a dehydration stress response leading to embryo arrest. The Plant Cell 35 (2), pp. 874 - 888 (2023)

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164.

Journal Article

Yi, J.; Kradolfer, D.; Brownfield, L.; Ma, Y.; Piskorz, E.; Köhler, C.; Jiang, H.: Meiocyte size is a determining factor for unreduced gamete formation in Arabidopsis thaliana. New Phytologist 237 (4), pp. 1179 - 1187 (2023)

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165.

Journal Article

Yin, Z.; Huang, W.; Fernie, A. R.; Yan, S.: Mass spectrometry imaging techniques: a versatile toolbox for plant metabolomics. Trends in Plant Science 28 (2), pp. 250 - 251 (2023)

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166.

Journal Article

Awada, R.; Lepelley, M.; Breton, D.; Charpagne, A.; Campa, C.; Berry, V.; Georget, F.; Breitler, J.-C.; Léran, S.; Djerrab, D. et al.; Martinez-Seidel, F.; Descombes, P.; Crouzillat, D.; Bertrand, B.; Etienne, H.: Global transcriptome profiling reveals differential regulatory, metabolic and hormonal networks during somatic embryogenesis in Coffea arabica. BMC Genomics 24, 41 (2023)

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167.

Journal Article

Águila Ruiz-Sola, M.; Flori, S.; Yuan, Y.; Villain, G.; Sanz-Luque, E.; Redekop, P.; Tokutsu, R.; Küken, A.; Tsichla, A.; Kepesidis, G. et al.; Allorent, G.; Arend, M.; Iacono, F.; Finazzi, G.; Hippler, M.; Nikoloski, Z.; Minagawa, J.; Grossman, A. R.; Petroutsos, D.: Light-independent regulation of algal photoprotection by CO2 availability. Nature Communications 14, 1977 (2023)

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168.

Journal Article

Andreou, G.M.; Messer, M.; Tong, H.; Nikoloski, Z.; Laitinen, R. A.E.: Heritability of temperature-mediated flower size plasticity in Arabidopsis thaliana. Quantitative Plant Biology 4, e4 (2023)

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169.

Journal Article

Bellucci, E.; Benazzo, A.; Xu, C.; Bitocchi, E.; Rodriguez, M.; Alseekh, S.; Di Vittori, V.; Gioia, T.; Neumann, K.; Cortinovis, G. et al.; Frascarelli, G.; Murube, E.; Trucchi, E.; Nanni, L.; Ariani, A.; Logozzo, G.; Shin, J. H.; Liu, C.; Jiang, L.; Ferreira, J. J.; Campa, A.; Attene, G.; Morrell, P. L.; Bertorelle, G.; Graner, A.; Gepts, P.; Fernie, A. R.; Jackson, S. A.; Papa, R.: Selection and adaptive introgression guided the complex evolutionary history of the European common bean. Nature Communications 14, 1908 (2023)

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170.

Journal Article

Chung, K. P.; Gonzalez-Duran, E.; Ruf, S.; Endries, P.; Bock, R.: Control of plastid inheritance by environmental and genetic factors. Nature Plants 9, pp. 68 - 80 (2023)

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171.

Journal Article

Fernie, A. R.; Skirycz, A.: Plant metabolism: A protein map of the photosynthetic organelle. Current Biology 33 (21), pp. R1147 - R1150 (2023)

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172.

Journal Article

Gonzalez-Duran, E.; Bock, R.: Chilling stress and loss of an exonuclease lead to biparental inheritance of plastids. Nature Plants 9, pp. 9 - 10 (2023)

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173.

Journal Article

Hunt, H.; Brueggen, N.; Galle, A.; Vanderauwera, S.; Frohberg, C.; Fernie, A. R.; Sonnewald, U.; Sweetlove, L.: Analysis of companion cell and phloem metabolism using a transcriptome-guided model of Arabidopsis metabolism. Plant Physiology 192 (2), pp. 1359 - 1377 (2023)

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174.

Journal Article

Kim, S.; Giraldo, N.; Rainaldi, V.; Machens, F.; Collas, F.; Kubis, A.; Kensy, F.; Bar-Even, A.; Lindner, S. N.: Optimizing E. coli as a formatotrophic platform for bioproduction via the reductive glycine pathway. Frontiers in Bioengineering and Biotechnology 11, 1091899 (2023)

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175.

Journal Article

Lima, L.G.A.D.; Ferreira, S.S.; Simões, M.S.; Cunha, L.X.D.; Fernie, A. R.; Cesarino, I.: Comprehensive expression analyses of the ABCG subfamily reveal SvABCG17 as a potential transporter of lignin monomers in the model C4 grass Setaria viridis. Journal of Plant Physiology 280, 153900 (2023)

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176.

Journal Article

Natale, R.; Coppola, M.; D'Agostino, N.; Zhang, Y.; Fernie, A. R.; Castaldi, V.; Rao, R.: In silico and in vitro approaches allow the identification of the Prosystemin molecular network. Computational and Structural Biotechnology Journal 21, pp. 212 - 223 (2023)

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177.

Journal Article

Perlikowski, D.; Skirycz, A.; Marczak, Ł.; Lechowicz, K.; Augustyniak, A.; Michaelis, Ä.; Arkadiusz, K.; Kosmala, A.: Metabolism of crown tissue is crucial for drought tolerance and recovery after stress cessation in Lolium/Festuca forage grasses. Journal of Experimental Botany 74 (1), pp. 396 - 414 (2023)

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178.

Journal Article

Poplawski, P.; Alseekh, S.; Jankowska, U.; Skupien-Rabian, B.; Iwanicka-Nowicka, R.; Kossowska, H.; Fogtman, A.; Rybicka, B.; Bogusławska, J.; Adamiok-Ostrowska, A. et al.; Hanusek, K.; Hanusek, J.; Koblowska, M.; Fernie, A. R.; Piekiełko-Witkowska, A.: Coordinated reprogramming of renal cancer transcriptome, metabolome and secretome associates with immune tumor infiltration. Cancer Cell International 23 (1), 2 (2023)

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179.

Journal Article

Reginaldo, F.P.S.; Bueno, P.C.P.; Lourenço, E.M.G.; de Matos Costa, I.C.; Moreira, L.G.L.; de Araújo Roque, A.; Barbosa, E.G.; Fett-Neto, A.G.; Cavalheiro, A.J.; Giordani, R.B.: Methyl jasmonate induces selaginellin accumulation in Selaginella convoluta. Metabolomics 19, 2 (2023)

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180.

Journal Article

Salem, M.; El-Shiekh, R.; Aborehab, N.; Al-Karmalawy, A.; Ezzat, S.; Alseekh, S.; Fernie, A. R.: Metabolomics driven analysis of Nigella sativa seeds identifies the impact of roasting on the chemical composition and immunomodulatory activity. Food Chemistry 398, 133906 (2023)

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181.

Journal Article

Sarnowska, E.; Kubala, S.; Cwiek, P.; Sacharowski, S.; Oksinska, P.; Steciuk, J.; Zaborowska, M.; Szurmak, J. M.; Dubianski, R.; Maassen, A. et al.; Stachowiak, M.; Huettel, B.; Ciesla, M.; Nowicka, K.; Rolicka, A. T.; Alseekh, S.; Bucior, E.; Franzen, R.; Skoneczna, A.; Domagalska, M. A.; Amar, S.; Hajirezaei, M.-R.; Siedlecki, J. A.; Fernie, A. R.; Davis, S. J.; Sarnowski, T. J.: A non-canonical function of Arabidopsis ERECTA proteins and a role of the SWI3B subunit of the SWI/SNF chromatin remodeling complex in gibberellin signaling. The Plant Journal 115 (3), pp. 788 - 802 (2023)

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182.

Journal Article

Sun, Y.; Alseekh, S.; Fernie, A. R.: Plant secondary metabolic responses to global climate change: A meta-analysis in medicinal and aromatic plants. GCB Bioenergy 29 (2), pp. 477 - 504 (2023)

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183.

Journal Article

Tiozon, R. J. N.; Sreenivasulu, N.; Alseekh, S.; Sartagoda, K.J.D.; Usadel, B.; Fernie, A. R.: Metabolomics and machine learning technique revealed that germination enhances the multi-nutritional properties of pigmented rice. Communications Biology 6 (1), 1000 (2023)

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184.

Journal Article

van Spoordonk, R.; Schneider, R.; Sampathkumar, A.: Mechano-chemical regulation of complex cell shape formation: Epidermal pavement cells—A case study. Quantitative Plant Biology 4, e5 (2023)

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185.

Journal Article

von Bismarck, T.; Korkmaz, K.; Ruß, J.; Skurk, K.; Kaiser, E.; Correa Galvis, V.; Cruz, J. A.; Strand, D.; Koehl, K. I.; Eirich, J. et al.; Finkemeier, I.; Jahns, P.; Kramer, D. M.; Armbruster, U.: Light acclimation interacts with thylakoid ion transport to govern the dynamics of photosynthesis in Arabidopsis. New Phytologist 237 (1), pp. 160 - 176 (2023)

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186.

Journal Article

Wu, T.; Gomez Coronado, P. A.; Kubis, A.; Lindner, S. N.; Marlière, P.; Erb, T.J.; Bar-Even, A.; He, H.: Engineering a synthetic energy-efficient formaldehyde assimilation cycle in Escherichia coli. Nature Communications 14, 8490 (2023)

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187.

Journal Article

Yang, L.; Machin, F.; Wang, S.; Saplaoura, E.; Kragler, F.: Heritable transgene-free genome editing in plants by grafting of wild-type shoots to transgenic donor rootstocks. Nature Biotechnology 41, pp. 958 - 967 (2023)

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188.

Journal Article

Yang, Z.; Liu, Z.; Xu, H.; Yufei, L.; Huang, S.; Cao, G.; Shi, M.; Zhu, J.; Zhou, J.; Li, R. et al.; Ding, Y.; Xiao, Y.; Liu, X.; Fernie, A. R.; Luo, J.: ArecaceaeMDB: A comprehensive multi-omics database for Arecaceae breeding and functional genomics studies. Plant Biotechnology Journal 21 (1), pp. 11 - 13 (2023)

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189.

Journal Article

Yuan, P.; Xu, C.; He, N.; Lu, X.; Zhang, X.; Shang, J.; Zhu, H.; Gong, C.; Kuang, H.; Tang, T. et al.; Xu, Y.; Ma, S.; Sun, D.; Zhang, W.; Umer, M.J.; Shi, J.; Fernie, A. R.; Liu, W.; Luo, J.: Watermelon domestication was shaped by stepwise selection and regulation of the metabolome. Science China Life Sciences 66, pp. 579 - 594 (2023)

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190.

Journal Article

Zhao, H.; He, Y.; Zhang, K.; Li, S.; Chen, Y.; He, M.; He, F.; Gao, B.; Yang, D.; Fan, Y. et al.; Zhu, X.; Yan, M.; Giglioli-Guivarc'h, N.; Hano, C.; Fernie, A. R.; Georgiev, M. I.; Dagmar, J.; Meglič, V.; Zhou, M.: Rewiring of the Seed Metabolome during Tartary Buckwheat Domestication. Plant Biotechnology Journal 21 (1), pp. 150 - 164 (2023)

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191.

Journal Article

Zhu, F.; Sun, Y.; Jadhav, S. S.; Cheng, Y.; Alseekh, S.; Fernie, A. R.: The Plant Metabolic Changes and the Physiological and Signaling Functions in the Responses to Abiotic Stress. Methods in Molecular Biology 2642, pp. 129 - 150 (2023)

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Book Chapter (6)

192.

Book Chapter

Mariette, A.; Curry, T. M.; Urbanowicz, B. R.; Ebert, B.: Plant Cell Wall Glycosyltransferases. In: Plant Cell Walls: Research 2023 Milestones and Conceptual Insights, pp. 29 - 60 (Ed. Geitmann, A.). CRC Press, Boca Raton (2023)

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193.

Book Chapter

de Souza, L. P.; Fernie, A. R.: Databases and Tools to Investigate Protein-Metabolite Interactions. In: Methods in Molecular Biology (Ed. Walker, J. M.) (2023)

MPG.PuRe

194.

Book Chapter

Luzarowski, M.; Skirycz, A.: Parallel Analysis of Protein–Protein and Protein–Metabolite Complexes Using a Single-Step Affinity Purification. In: Methods in Molecular Biology, Vol. 2554 (Ed. Walker, J. M.) (2023)

MPG.PuRe

195.

Book Chapter

Luzarowski, M.; Sokolowska, E.; Schlossarek, D.; Skirycz, A.: PROMIS: Co-fractionation Mass Spectrometry for Analysis of Protein–Metabolite Interactions. In: Methods in Molecular Biology (Ed. Walker, J. M.). Springer, US (2023)

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196.

Book Chapter

Walther, D.: Specifics of Metabolite-Protein Interactions and Their Computational Analysis and Prediction. In: Methods in Molecular Biology (Ed. Walker, J. M.) (2023)

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197.

Book Chapter

Zhu, F.; Bulut, M.; Cheng, Y.; Alseekh, S.; Fernie, A. R.: Metabolite-Based Genome-Wide Association Studies of Large-Scale Metabolome Analysis to Illustrate Alterations in the Metabolite Landscape of Plants upon Responses to Stresses. In: Methods in Molecular Biology, Vol. 2642, pp. 241 - 255 (2023)

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Editorial (6)

198.

Editorial

Dellero, Y.; Nikoloski, Z.: Editorial: Isotopic Labeling Approaches for Exploring Plant Metabolism Dynamics. Frontiers in Plant Science 14, 1356153 (2023)

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199.

Editorial

Yan, J.; Fernie, A. R.: Editorial overview: 21st Century solutions for crop improvement. Current Opinion in Biotechnology 83, 102982 (2023)

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200.

Editorial

Ort, D. R.; Lunn, J. E.: Society for Experimental Biology Centenary (1923–2023). Journal of Experimental Botany 74 (14), pp. 3877 - 3878 (2023)

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