Publications of the MPI

1.

Journal Article

Diaz, C.; Kusano, M.; Sulpice, R.; Araki, M.; Redestig, H.; Saito, K.; Stitt, M.; Shin, R.: Determining novel functions of Arabidopsis 14-3-3 proteins in central metabolic processes. BMC Systems Biology 5, p. 192 - 192 (2011)

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2.

Journal Article

Bar-Even, A.; Noor, E.; Flamholz, A.; Buescher, J. M.; Milo, R.: Hydrophobicity and Charge Shape Cellular Metabolite Concentrations. PLoS Computational Biology 7 (10), e1002166 (2011)

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3.

Journal Article

Pélissier, T.; Clavel, M.; Chaparro, C.; Pouch-Pélissier, M.-N.; Vaucheret, H.; Deragon, J.-M.: Double-stranded RNA binding proteins DRB2 and DRB4 have an antagonistic impact on polymerase IV-dependent siRNA levels in Arabidopsis. RNA: A Publication of the RNA Society 17 (8), pp. 1502 - 1510 (2011)

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4.

Journal Article

Gutjahr, C.; Novero, M.; Welham, T.; Wang, T.; Bonfante, P.: Root starch accumulation in response to arbuscular mycorrhizal colonization differs among Lotus japonicus starch mutants. Planta 234 (3), pp. 639 - 646 (2011)

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5.

Journal Article

Dortay, H.; Akula, U. M.; Westphal, C.; Sittig, M.; Mueller-Roeber, B.: High-Throughput Protein Expression Using a Combination of Ligation-Independent Cloning (LIC) and Infrared Fluorescent Protein (IFP) Detection. PLoS One 6 (4), p. e18900 (2011)

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6.

Journal Article

Aichinger, E.; Villar, C.B.R.; di Mambro, R.; Sabatini, S.; Köhler, C.: The CHD3 chromatin remodeler PICKLE and polycomb group proteins antagonistically regulate meristem activity in the Arabidopsis root. The Plant Cell 23 (3), pp. 1047 - 1060 (2011)

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7.

Journal Article

Allen, A. E.; Dupont, C. L.; Obornik, M.; Horak, A.; Nunes-Nesi, A.; McCrow, J. P.; Zheng, H.; Johnson, D. A.; Hu, H. H.; Fernie, A. R. et al.; Bowler, C.: Evolution and metabolic significance of the urea cycle in photosynthetic diatoms. Nature 473 (7346), pp. 203 - 209 (2011)

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8.

Journal Article

Almeida, J.; Quadrana, L.; Asis, R.; Setta, N.; de Godoy, F.; Bermudez, L.; Otaiza, S. N.; da Silva, J. V. C.; Fernie, A. R.; Carrari, F. et al.; Rossi, M.: Genetic dissection of vitamin E biosynthesis in tomato. Journal of Experimental Botany 62 (11), pp. 3781 - 3798 (2011)

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9.

Journal Article

Angelovici, R.; Fait, A.; Fernie, A. R.; Galili, G.: A seed high-lysine trait is negatively associated with the TCA cycle and slows down Arabidopsis seed germination. New Phytologist 189 (1), pp. 148 - 159 (2011)

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10.

Journal Article

Araujo, W. L.; Ishizaki, K.; Nunes-Nesi, A.; Tohge, T.; Larson, T. R.; Krahnert, I.; Balbo, I.; Witt, S.; Doermann, P.; Graham, I. A. et al.; Leaver, C. J.; Fernie, A. R.: Analysis of a Range of Catabolic Mutants Provides Evidence That Phytanoyl-Coenzyme A Does Not Act as a Substrate of the Electron-Transfer Flavoprotein/Electron-Transfer Flavoprotein:Ubiquinone Oxidoreductase Complex in Arabidopsis during Dark-Induced Senescence. Plant Physiology 157 (1), pp. 55 - 69 (2011)

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11.

Journal Article

Araujo, W. L.; Nunes-Nesi, A.; Fernie, A. R.: Fumarate: Multiple functions of a simple metabolite. Phytochemistry 72 (9), pp. 838 - 843 (2011)

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12.

Journal Article

Araujo, W. L.; Nunes-Nesi, A.; Osorio, S.; Usadel, B.; Fuentes, D.; Nagy, R.; Balbo, I.; Lehmann, M.; Studart-Witkowski, C.; Tohge, T. et al.; Martinoia, E.; Jordana, X.; DaMatta, F. M.; Fernie, A. R.: Antisense Inhibition of the Iron-Sulphur Subunit of Succinate Dehydrogenase Enhances Photosynthesis and Growth in Tomato via an Organic Acid-Mediated Effect on Stomatal Aperture. The Plant Cell 23 (2), pp. 600 - 627 (2011)

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13.

Journal Article

Armbruster, U.; Pesaresi, P.; Pribil, M.; Hertle, A.; Leister, D.: Update on Chloroplast Research: New Tools, New Topics, and New Trends. Molecular Plant 4 (1), pp. 1 - 16 (2011)

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14.

Journal Article

Arvidsson, S.; Perez-Rodriguez, P.; Mueller-Roeber, B.: A growth phenotyping pipeline for Arabidopsis thaliana integrating image analysis and rosette area modeling for robust quantification of genotype effects. New Phytologist 191 (3), pp. 895 - 907 (2011)

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15.

Journal Article

Balazadeh, S.; Kwasniewski, M.; Caldana, C.; Mehrnia, M.; Zanor, M. I.; Xue, G. P.; Mueller-Roeber, B.: ORS1, an H(2)O(2)-Responsive NAC Transcription Factor, Controls Senescence in Arabidopsis thaliana. Molecular Plant 4 (2), pp. 346 - 360 (2011)

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16.

Journal Article

Banks, J. A.; Nishiyama, T.; Hasebe, M.; Bowman, J. L.; Gribskov, M.; dePamphilis, C.; Albert, V. A.; Aono, N.; Aoyama, T.; Ambrose, B. A. et al.; Ashton, N. W.; Axtell, M. J.; Barker, E.; Barker, M. S.; Bennetzen, J. L.; Bonawitz, N. D.; Chapple, C.; Cheng, C. Y.; Correa, L. G. G.; Dacre, M.; DeBarry, J.; Dreyer, I.; Elias, M.; Engstrom, E. M.; Estelle, M.; Feng, L.; Finet, C.; Floyd, S. K.; Frommer, W. B.; Fujita, T.; Gramzow, L.; Gutensohn, M.; Harholt, J.; Hattori, M.; Heyl, A.; Hirai, T.; Hiwatashi, Y.; Ishikawa, M.; Iwata, M.; Karol, K. G.; Koehler, B.; Kolukisaoglu, U.; Kubo, M.; Kurata, T.; Lalonde, S.; Li, K. J.; Li, Y.; Litt, A.; Lyons, E.; Manning, G.; Maruyama, T.; Michael, T. P.; Mikami, K.; Miyazaki, S.; Morinaga, S.; Murata, T.; Mueller-Roeber, B.; Nelson, D. R.; Obara, M.; Oguri, Y.; Olmstead, R. G.; Onodera, N.; Petersen, B. L.; Pils, B.; Prigge, M.; Rensing, S. A.; Riano-Pachon, D. M.; Roberts, A. W.; Sato, Y.; Scheller, H. V.; Schulz, B.; Schulz, C.; Shakirov, E. V.; Shibagaki, N.; Shinohara, N.; Shippen, D. E.; Sorensen, I.; Sotooka, R.; Sugimoto, N.; Sugita, M.; Sumikawa, N.; Tanurdzic, M.; Theissen, G.; Ulvskov, P.; Wakazuki, S.; Weng, J. K.; Willats, W. W. G. T.; Wipf, D.; Wolf, P. G.; Yang, L. X.; Zimmer, A. D.; Zhu, Q. H.; Mitros, T.; Hellsten, U.; Loque, D.; Otillar, R.; Salamov, A.; Schmutz, J.; Shapiro, H.; Lindquist, E.,. e. a.: The Selaginella Genome Identifies Genetic Changes Associated with the Evolution of Vascular Plants. Science 332 (6032), pp. 960 - 963 (2011)

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17.

Journal Article

Bar-Even, A.; Noor, E.; Savir, Y.; Liebermeister, W.; Davidi, D.; Tawfik, D. S.; Milo, R.: The Moderately Efficient Enzyme: Evolutionary and Physicochemical Trends Shaping Enzyme Parameters. Biochemistry 50 (21), pp. 4402 - 4410 (2011)

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18.

Journal Article

Barratt, D. H. P.; Koelling, K.; Graf, A.; Pike, M.; Calder, G.; Findlay, K.; Zeeman, S. C.; Smith, A. M.: Callose Synthase GSL7 Is Necessary for Normal Phloem Transport and Inflorescence Growth in Arabidopsis. Plant Physiology 155 (1), pp. 328 - 341 (2011)

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19.

Journal Article

Basler, G.; Ebenhoeh, O.; Selbig, J.; Nikoloski, Z.: Mass-balanced randomization of metabolic networks. Bioinformatics 27 (10), pp. 1397 - 1403 (2011)

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20.

Journal Article

Basler, G.; Grimbs, S.; Ebenhoeh, O.; Selbig, J.; Nikoloski, Z.: Evolutionary significance of metabolic network properties. Journal of the Royal Society Interface 9 (71), pp. 1168 - 1176 (2011)

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21.

Journal Article

Basler, G.; Nikoloski, Z.: JMassBalance: mass-balanced randomization and analysis of metabolic networks. Bioinformatics 27 (19), pp. 2761 - 2762 (2011)

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22.

Journal Article

Bazzini, A. A.; Manacorda, C. A.; Tohge, T.; Conti, G.; Rodriguez, M. C.; Nunes-Nesi, A.; Villanueva, S.; Fernie, A. R.; Carrari, F.; Asurmendi, S.: Metabolic and miRNA Profiling of TMV Infected Plants Reveals Biphasic Temporal Changes. PLoS One 6 (12), p. e28466 (2011)

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23.

Journal Article

Bloem, E.; Rubekin, K.; Haneklaus, S.; Banfalvi, Z.; Hesse, H.; Schnug, E.: H(2)S and COS Gas Exchange of Transgenic Potato Lines with Modified Expression Levels of Enzymes Involved in Sulphur Metabolism. Journal of Agronomy and Crop Science 197 (4), pp. 311 - 321 (2011)

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24.

Journal Article

Branscheid, A.; Devers, E. A.; May, P.; Krajinski, F.: Distribution pattern of small RNA and degradome reads provides information on miRNA gene structure and regulation. Plant Signaling & Behavior 6 (10), pp. 1609 - 1611 (2011)

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25.

Journal Article

Brotman, Y.; Riewe, D.; Lisec, J.; Meyer, R. C.; Willmitzer, L.; Altmann, T.: Identification of enzymatic and regulatory genes of plant metabolism through QTL analysis in Arabidopsis. SI 168 (12), pp. 1387 - 1394 (2011)

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26.

Journal Article

Burgos, A.; Szymanski, J.; Seiwert, B.; Degenkolbe, T.; Hannah, M. A.; Giavalisco, P.; Willmitzer, L.: Analysis of short-term changes in the Arabidopsis thaliana glycerolipidome in response to temperature and light. The Plant Journal 66 (4), pp. 656 - 668 (2011)

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27.

Journal Article

Caldana, C.; Degenkolbe, T.; Cuadros-Inostroza, A.; Klie, S.; Sulpice, R.; Leisse, A.; Steinhauser, D.; Fernie, A. R.; Willmitzer, L.; Hannah, M. A.: High-density kinetic analysis of the metabolomic and transcriptomic response of Arabidopsis to eight environmental conditions. The Plant Journal 67 (5), pp. 869 - 884 (2011)

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28.

Journal Article

Carillo, P.; Parisi, D.; Woodrow, P.; Pontecorvo, G.; Massaro, G.; Annunziata, M. G.; Fuggi, A.; Sulpice, R.: Salt-induced accumulation of glycine betaine is inhibited by high light in durum wheat. Functional Plant Biology 38 (2), pp. 139 - 150 (2011)

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29.

Journal Article

Catchpole, G.; Platzer, A.; Weikert, C.; Kempkensteffen, C.; Johannsen, M.; Krause, H.; Jung, K.; Miller, K.; Willmitzer, L.; Selbig, J. et al.; Weikert, S.: Metabolic profiling reveals key metabolic features of renal cell carcinoma. Journal of Cellular and Molecular Medicine 15 (1), pp. 109 - 118 (2011)

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30.

Journal Article

Centeno, D. C.; Osorio, S.; Nunes-Nesi, A.; Bertolo, A. L. F.; Carneiro, R. T.; Araujo, W. L.; Steinhauser, M.-C.; Michalska, J.; Rohrmann, J.; Geigenberger, P. et al.; Oliver, S. N.; Stitt, M.; Carrari, F.; Rose, J. K. C.; Fernie, A. R.: Malate Plays a Crucial Role in Starch Metabolism, Ripening, and Soluble Solid Content of Tomato Fruit and Affects Postharvest Softening. The Plant Cell 23 (1), pp. 162 - 184 (2011)

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31.

Journal Article

Clauss, K.; von Roepenack-Lahaye, E.; Boettcher, C.; Roth, M. R.; Welti, R.; Erban, A.; Kopka, J.; Scheel, D.; Milkowski, C.; Strack, D.: Overexpression of Sinapine Esterase BnSCE3 in Oilseed Rape Seeds Triggers Global Changes in Seed Metabolism. Plant Physiology 155 (3), pp. 1127 - 1145 (2011)

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32.

Journal Article

Csukasi, F.; Osorio, S.; Gutierrez, J. R.; Kitamura, J.; Giavalisco, P.; Nakajima, M.; Fernie, A. R.; Rathjen, J. P.; Botella, M. A.; Valpuesta, V. et al.; Medina-Escobar, N.: Gibberellin biosynthesis and signalling during development of the strawberry receptacle. New Phytologist 191 (2), pp. 376 - 390 (2011)

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33.

Journal Article

Dal Cin, V.; Tieman, D. M.; Tohge, T.; McQuinn, R.; de Vos, R. C. H.; Osorio, S.; Schmelz, E. A.; Taylor, M. G.; Smits-Kroon, M. T.; Schuurink, R. C. et al.; Haring, M. A.; Giovannoni, J.; Fernie, A. R.; Klee, H. J.: Identification of Genes in the Phenylalanine Metabolic Pathway by Ectopic Expression of a MYB Transcription Factor in Tomato Fruit. The Plant Cell 23 (7), pp. 2738 - 2753 (2011)

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34.

Journal Article

Dang, N. X.; Hincha, D. K.: Identification of two hydrophilins that contribute to the desiccation and freezing tolerance of yeast (Saccharomyces cerevisiae) cells. Cryobiology 62 (3), pp. 188 - 193 (2011)

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35.

Journal Article

De Smet, I.; Voss, U.; Lau, S.; Wilson, M.; Shao, N.; Timme, R. E.; Swarup, R.; Kerr, I.; Hodgman, C.; Bock, R. et al.; Bennett, M.; Juergens, G.; Beeckman, T.: Unraveling the Evolution of Auxin Signaling. Plant Physiology 155 (1), pp. 209 - 221 (2011)

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36.

Journal Article

Debast, S.; Nunes-Nesi, A.; Hajirezaei, M.-R.; Hofmann, J.; Sonnewald, U.; Fernie, A. R.; Bornke, F.: Altering Trehalose-6-Phosphate Content in Transgenic Potato Tubers Affects Tuber Growth and Alters Responsiveness to Hormones during Sprouting. Plant Physiology 156 (4), pp. 1754 - 1771 (2011)

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37.

Journal Article

DeBolt, S.; Mendu, V.; Griffiths, J. S.; Persson, S.; Stork, J.; Downie, A. B.; Voiniciuc, C.; Haughn, G. W.: Subfunctionalization of Cellulose Synthases in Seed Coat Epidermal Cells Mediates Secondary Radial Wall Synthesis and Mucilage Attachment. Plant Physiology 157 (1), pp. 441 - 453 (2011)

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38.

Journal Article

Degu, A.; Hatew, B.; Nunes-Nesi, A.; Shlizerman, L.; Zur, N.; Katz, E.; Fernie, A. R.; Blumwald, E.; Sadka, A.: Inhibition of aconitase in citrus fruit callus results in a metabolic shift towards amino acid biosynthesis. Planta 234 (3), pp. 501 - 513 (2011)

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39.

Journal Article

Devers, E. A.; Branscheid, A.; May, P.; Krajinski, F.: Stars and Symbiosis: MicroRNA- and MicroRNA*-Mediated Transcript Cleavage Involved in Arbuscular Mycorrhizal Symbiosis. Plant Physiology 156 (4), pp. 1990 - 2010 (2011)

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40.

Journal Article

Devers, E. A.; Wewer, V.; Dombrink, I.; Doermann, P.; Holzl, G.: A Processive Glycosyltransferase Involved in Glycolipid Synthesis during Phosphate Deprivation in Mesorhizobium loti. Journal of Bacteriology 193 (6), pp. 1377 - 1384 (2011)

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41.

Journal Article

Dietzel, L.; Braeutigam, K.; Steiner, S.; Schueffler, K.; Lepetit, B.; Grimm, B.; Schöttler, M. A.; Pfannschmidt, T.: Photosystem II Supercomplex Remodeling Serves as an Entry Mechanism for State Transitions in Arabidopsis. The Plant Cell 23 (8), pp. 2964 - 2977 (2011)

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42.

Journal Article

Djamei, A.; Schipper, K.; Rabe, F.; Ghosh, A.; Vincon, V.; Kahnt, J.; Osorio, S.; Tohge, T.; Fernie, A. R.; Feussner, I. et al.; Feussner, K.; Meinicke, P.; Stierhof, Y. D.; Schwarz, H.; Macek, B.; Mann, M.; Kahmann, R.: Metabolic priming by a secreted fungal effector. Nature 478 (7369), pp. 395 - 398 (2011)

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43.

Journal Article

Dortay, H.; Schmockel, S. M.; Fettke, J.; Mueller-Roeber, B.: Expression of human c-reactive protein in different systems and its purification from Leishmania tarentolae. Protein Expression and Purification 78 (1), pp. 55 - 60 (2011)

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44.

Journal Article

Drechsel, O.; Bock, R.: Selection of Shine-Dalgarno sequences in plastids. Nucleic Acids Research 39 (4), pp. 1427 - 1438 (2011)

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45.

Journal Article

Ebenhoeh, O.; Houwaart, T.; Lokstein, H.; Schlede, S.; Tirok, K.: A minimal mathematical model of nonphotochemical quenching of chlorophyll fluorescence. Biosystems 103 (2), pp. 196 - 204 (2011)

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46.

Journal Article

Elghabi, Z.; Karcher, D.; Zhou, F.; Ruf, S.; Bock, R.: Optimization of the expression of the HIV fusion inhibitor cyanovirin-N from the tobacco plastid genome. Plant Biotechnology Journal 9 (5), pp. 599 - 608 (2011)

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47.

Journal Article

Elghabi, Z.; Ruf, S.; Bock, R.: Biolistic co-transformation of the nuclear and plastid genomes. Plant Journal 67 (5), pp. 941 - 948 (2011)

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48.

Journal Article

Engel, N.; Ewald, R.; Gupta, K. J.; Zrenner, R.; Hagemann, M.; Bauwe, H.: The Presequence of Arabidopsis Serine Hydroxymethyltransferase SHM2 Selectively Prevents Import into Mesophyll Mitochondria. Plant Physiology 157 (4), pp. 1711 - 1720 (2011)

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49.

Journal Article

Fait, A.; Nunes Nesi, A.; Angelovici, R.; Lehmann, M.; Pham, P. A.; Song, L.; Haslam, R. P.; Napier, J. A.; Galili, G.; Fernie, A. R.: Targeted Enhancement of Glutamate-to-gamma-Aminobutyrate Conversion in Arabidopsis Seeds Affects Carbon-Nitrogen Balance and Storage Reserves in a Development-Dependent Manner. Plant Physiology 157 (3), pp. 1026 - 1042 (2011)

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50.

Journal Article

Fettke, J.; Nunes-Nesi, A.; Fernie, A. R.; Steup, M.: Identification of a novel heteroglycan-interacting protein, HIP 1.3, from Arabidopsis thaliana. Journal of Plant Physiology 168 (12), pp. 1415 - 1425 (2011)

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Publications of the institute

Journal Article (171)