Publications of the MPI

1.

Journal Article

Alseekh, S.; Bermudez, L.; de Haro, L. A.; Fernie, A. R.; Carrari, F.: Crop metabolomics: from diagnostics to assisted breeding. Metabolomics 14 (11), 148 (2018)

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2.

Journal Article

Mozgova, I.; Wildhaber, T.; Trejo-Arellano, M. S.; Fajkus, J.; Roszak, P.; Köhler, C.; Hennig, L.: Transgenerational phenotype aggravation in CAF-1 mutants reveals parent-of-origin specific epigenetic inheritance. New Phytologist 220 (3), pp. 908 - 921 (2018)

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3.

Journal Article

Sakamoto, S.; Somssich, M.; Nakata, M. T.; Unda, F.; Atsuzawa, K.; Kaneko, Y.; Wang, T.; Bågman, A.-M.; Gaudinier, A.; Yoshida, K. et al.; Brady, S. M.; Mansfield, S. D.; Persson, S.; Mitsuda, N.: Complete substitution of a secondary cell wall with a primary cell wall in Arabidopsis. Nature Plants 4 (10), pp. 777 - 783 (2018)

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4.

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Brandt, S.; Fachinger, S.; Tohge, T.; Fernie, A. R.; Braun, H.-P.; Hildebrandt, T. M.: Extended darkness induces internal turnover of glucosinolates in Arabidopsis thaliana leaves. PLoS One 13 (8), pp. 1 - 15 (2018)

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5.

Journal Article

Fernie, A. R.: Extending the cascade: identification of a mitogen-activated protein kinase phosphatase playing a key role in rice yield. The Plant Journal 95 (6), pp. 935 - 936 (2018)

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6.

Journal Article

dos Anjos, L.; Pandey, P. K.; Moraes, T. A.; Feil, R.; Lunn, J. E.; Stitt, M.: Feedback regulation by trehalose 6-phosphate slows down starch mobilization below the rate that would exhaust starch reserves at dawn in Arabidopsis leaves. Plant Direct 2 (8), e00078 (2018)

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7.

Journal Article

Dotson, B. R.; Soltan, D.; Schmidt, J.; Areskoug, M.; Rabe, K.; Swart, C.; Widell, S.; Rasmusson, A. G.: The antibiotic peptaibol alamethicin from Trichoderma permeabilises Arabidopsis root apical meristem and epidermis but is antagonised by cellulase-induced resistance to alamethicin. BMC Plant Biology 18 (1), 165 (2018)

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8.

Journal Article

Ashtiani, M.; Salehzadeh-Yazdi, A.; Razaghi-Moghadam, Z.; Hennig, H.; Wolkenhauer, O.; Mirzaie, M.; Jafari, M.: A systematic survey of centrality measures for protein-protein interaction networks. BMC Systems Biology 12 (1), 80 (2018)

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9.

Journal Article

Brands, M.; Wewer, V.; Keymer, A.; Gutjahr, C.; Dormann, P.: The Lotus japonicus acyl-acyl carrier protein thioesterase FatM is required for mycorrhiza formation and lipid accumulation of Rhizophagus irregularis. The Plant Journal 95 (2), pp. 219 - 232 (2018)

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10.

Journal Article

Janowski, M.; Zoschke, R.; Scharff, L. B.; Martinez-Jaime, S.; Ferrari, C.; Proost, S.; Ng Wei Xiong, J.; Omranian, N.; Musialak-Lange, M.; Nikoloski, Z. et al.; Graf, A.; Schöttler, M. A.; Sampathkumar, A.; Vaid, N.; Mutwil, M.: AtRsgA from Arabidopsis thaliana is important for maturation of the small subunit of the chloroplast ribosome. The Plant Journal 96 (2), pp. 404 - 420 (2018)

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11.

Journal Article

Derrien, B.; Clavel, M.; Baumberger, N.; Iki, T.; Sarazin, A.; Hacquard, T.; Ponce, M.; Ziegler-Graff, V.; Vaucheret, H.; Micol, J. et al.; Voinnet, O.; Genschik, P.: A Suppressor Screen for AGO1 Degradation by the Viral F-Box P0 Protein Uncovers a Role for AGO DUF1785 in sRNA Duplex Unwinding. Plant Cell 30 (6), pp. 1353 - 1374 (2018)

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12.

Journal Article

Hölscher, M.; Tiller, N.; Teh, A. Y.-H.; Wu, G.; Ma, J. K.-C.; Bock, R.: High-level expression of the HIV entry inhibitor griffithsin from the plastid genome and retention of biological activity in dried tobacco leaves. Plant Molecular Biology 97, pp. 357 - 370 (2018)

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13.

Journal Article

Kumar, P.; Garrido, E.; Zhao, K.; Zheng, Y.; Alseekh, S.; Vargas-Ortiz, E.; Fernie, A. R.; Fei, Z.; Poveda, K.; Jander, G.: Tecia solanivora infestation increases tuber starch accumulation in Pastusa Suprema potatoes. Journal of Integrative Plant Biology 60 (11), pp. 1083 - 1096 (2018)

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14.

Journal Article

Keymer, A.; Huber, C.; Eisenreich, W.; Gutjahr, C.: Tracking Lipid Transfer by Fatty Acid Isotopolog Profiling from Host Plants to Arbuscular Mycorrhiza Fungi. BIO-PROTOCOL 8 (7), e2786 (2018)

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15.

Journal Article

Tohge, T.; Borghi, M.; Fernie, A. R.: The natural variance of the Arabidopsis floral secondary metabolites. Scientific Data 5, 180051 (2018)

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16.

Journal Article

Lim, G.-H.; Hoey, T.; Zhu, S.; Clavel, M.; Yu, K.; Navarre, D.; Kachroo, A.; Deragon, J.-M.; Kachroo, P.: COP1, a negative regulator of photomorphogenesis, positively regulates plant disease resistance via double-stranded RNA binding proteins. PLoS Pathogens 14 (3), e1006894 (2018)

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17.

Journal Article

Incarbone, M.; Ritzenthaler, C.; Dunoyer, P.: Peroxisomal Targeting as a Sensitive Tool to Detect Protein-Small RNA Interactions through in Vivo Piggybacking. Frontiers in Plant Science 9, 135 (2018)

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18.

Journal Article

Monsion, B.; Incarbone, M.; Hleibieh, K.; Poignavent, V.; Ghannam, A.; Dunoyer, P.; Daeffler, L.; Tilsner, J.; Ritzenthaler, C.: Efficient Detection of Long dsRNA in Vitro and in Vivo Using the dsRNA Binding Domain from FHV B2 Protein. Frontiers in Plant Science 9, 70 (2018)

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19.

Journal Article

Yu, P.; Wang, C.; Baldauf, J.; Tai, H.; Gutjahr, C.; Hochholdinger, F.; Li, C.: Root type and soil phosphate determine the taxonomic landscape of colonizing fungi and the transcriptome of field-grown maize roots. New Phytologist 217 (3), pp. 1240 - 1253 (2018)

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20.

Journal Article

Alhajturki, D.; Muralidharan, S.; Nurmi, M.; Rowan, B. A.; Lunn, J. E.; Boldt, H.; Salem, M.A.; Alseekh, S.; Jorzig, C.; Feil, R. et al.; Giavalisco, P.; Fernie, A. R.; Weigel, D.; Laitinen, R.: Dose-dependent interactions between two loci trigger altered shoot growth in BG-5 × Krotzenburg-0 (Kro-0) hybrids of Arabidopsis thaliana. New Phytologist 217 (1), pp. 392 - 406 (2018)

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21.

Journal Article

Alseekh, S.; Fernie, A. R.: Metabolomics 20 years on: what have we learned and what hurdles remain? The Plant Journal 94 (6), pp. 933 - 942 (2018)

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22.

Journal Article

Andersson, M.; Turesson, H.; Arrivault, S.; Zhang, Y.; Fält, A.-S.; Fernie, A. R.; Hofvander, P.: Inhibition of plastid PPase and NTT leads to major changes in starch and tuber formation in potato. Journal of Experimental Botany 69 (8), pp. 1913 - 1924 (2018)

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23.

Journal Article

Annunziata, M. G.: The Long and the Short of It: GA 2-oxidaseA9 Regulates Plant Height in Wheat. Plant Physiology 177 (1), pp. 3 - 4 (2018)

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24.

Journal Article

Annunziata, M. G.; Apelt, F.; Carillo, P.; Krause, U.; Feil, R.; Koehl, K. I.; Lunn, J. E.; Stitt, M.: Response of Arabidopsis primary metabolism and circadian clock to low night temperature in a natural light environment. Journal of Experimental Botany 69 (20), pp. 4881 - 4895 (2018)

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25.

Journal Article

Arif, M.A.; Alseekh, S.; Harb, J.; Fernie, A. R.; Frank, W.: Abscisic acid, cold and salt stimulate conserved metabolic regulation in the moss Physcomitrella patens. Plant Biology 20 (6), pp. 1014 - 1022 (2018)

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26.

Journal Article

Atanasov, K. E.; Liu, C.; Erban, A.; Kopka, J.; Parker, J. E.; Alcázar, R.: NLR Mutations Suppressing Immune Hybrid Incompatibility and Their Effects on Disease Resistance. Plant Physiology 177 (3), pp. 1152 - 1169 (2018)

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27.

Journal Article

Avin-Wittenberg, T.; Baluška, F.; Bozhkov, P.V.; Elander, P.H.; Fernie, A. R.; Galili, G.; Hassan, A.; Hofius, D.; Isono, E.; Le Bars, R. et al.; Masclaux-Daubresse, C.; Minina, E.A.; Peled-Zehavi, H.; Coll, N.S.; Sandalio, L.M.; Satiat-Jeunemaitre, B.; Sirko, A.; Testillano, P.S.; Batoko, H.: Autophagy-related approaches for improving nutrient use efficiency and crop yield protection. Journal of Experimental Botany 69 (6), pp. 1335 - 1353 (2018)

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28.

Journal Article

Avin-Wittenberg, T.; Baluska, F.; Bozhkov, P. V.; Elander, P. H.; Fernie, A. R.; Galili, G.; Hassan, A.; Hofius, D.; Isono, E.; Le Bars, R. et al.; Masclaux-Daubresse, C.; Minina, E. A.; Peled-Zehavi, H.; Coll, N. S.; Sandalio, L. M.; Satiat-Jeunemaitre, B.; Sirko, A.; Testillano, P. S.; Batoko, H.: Corrigendum: Autophagy-related approaches for improving nutrient use efficiency and crop yield protection. Journal of Experimental Botany 69 (12), p. 3173 - 3173 (2018)

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29.

Journal Article

Awais, M.; Ahmad, R.; Khan, N.; Garapati, P.; Shahzad, M.; Afroz, A.; Rashid, U.; Khan, S.A.: Transformation of tomato variety rio grande with drought resistant transcription factor gene ATAF1 and its molecular analysis. Pakistan Journal of Botany 50 (5), pp. 1811 - 1820 (2018)

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30.

Journal Article

Balazadeh, S.; Mueller-Roeber, B.: A balance to death. Nature Plants 4 (11), pp. 863 - 864 (2018)

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31.

Journal Article

Bar-Even, A.: Daring metabolic designs for enhanced plant carbon fixation. Plant Science 273 (SI), pp. 71 - 83 (2018)

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32.

Journal Article

Basler, G.; Fernie, A. R.; Nikoloski, Z.: Advances in metabolic flux analysis toward genome-scale profiling of higher organisms. Bioscience Reports 38 (6), 6 (2018)

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33.

Journal Article

Basler, G.; Thompson, M.; Tullman-Ercek, D.; Keasling, J.: A Pseudomonas putida efflux pump acts on short-chain alcohols. Biotechnology for Biofuels 11 (1), 136 (2018)

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34.

Journal Article

Beine-Golovchuk, O.; Firmino, A.; Dabrowska, A.; Schmidt, S.; Erban, A.; Walther, D.; Zuther, E.; Hincha, D. K.; Kopka, J.: Plant Temperature Acclimation and Growth Rely on Cytosolic Ribosome Biogenesis Factor Homologs. Plant Physiology 176 (3), pp. 2251 - 2276 (2018)

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35.

Journal Article

Bermúdez, L.; Del Pozo, T.; Silvestre Lira, B.; de Godoy, F.; Boos, I.; Romanò, C.; Previtali, V.; Almeida, J.; Bréhélin, C.; Asis, R. et al.; Quadrana, L.; Demarco, D.; Alseekh, S.; Salinas Gamboa, R.; Pérez-Flores, L.; Dominguez, P.G.; Rothan, C.; Fernie, A. R.; González, M.; Stocker, A.; Hemmerle, A.; Clausen, M.H.; Carrari, F.; Rossi, M.: A Tomato Tocopherol-Binding Protein Sheds Light on Intracellular α-Tocopherol Metabolism in Plants. Plant and Cell Physiology 59 (11), pp. 2188 - 2203 (2018)

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36.

Journal Article

Borges, F.; Parent, J.-S.; van Ex, F.; Wolff, P.; Martinez, G.; Köhler, C.; Martienssen, R. A.: Transposon-derived small RNAs triggered by miR845 mediate genome dosage response in Arabidopsis. Nature Genetics 50 (2), pp. 186 - 192 (2018)

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37.

Journal Article

Borghi, M.; Xie, D.-Y.: Cloning and characterization of a monoterpene synthase gene from flowers of Camelina sativa. Planta 247 (2), pp. 443 - 457 (2018)

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38.

Journal Article

Bustamante, C. A.; Brotman, Y.; Monti, L. L.; Gabilondo, J.; Budde, C. O.; Lara, M. V.; Fernie, A. R.; Drincovich, M. F.: Differential lipidome remodeling during postharvest of peach varieties with different susceptibility to chilling injury. Physiologia Plantarum 163 (1), pp. 2 - 17 (2018)

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39.

Journal Article

Casartelli, A.; Riewe, D.; Hubberten, H. M.; Altmann, T.; Hoefgen, R.; Heuer, S.: Exploring traditional aus-type rice for metabolites conferring drought tolerance. Rice 11 (1), 9 (2018)

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40.

Journal Article

Cavalcanti, J.H.F.; Kirma, M.; Barros, J.A.S.; Quinhones, C.G.S.; Pereira-Lima, Í.; Obata, T.; Nunes-Nesi, A.; Galili, G.; Fernie, A. R.; Avin-Wittenberg, T. et al.; Araújo, W.L.: An L,L-diaminopimelate aminotransferase mutation leads to metabolic shifts and growth inhibition in Arabidopsis. Journal of Experimental Botany 69 (22), pp. 5489 - 5506 (2018)

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41.

Journal Article

Chander, S.; Almeida, D. M.; Serra, T. S.; Jardim-Messeder, D.; Barros, P. M.; Lourenço, T. F.; Figueiredo, D.D.; Margis-Pinheiro, M.; Costa, J. M.; Oliveira, M. M. et al.; Saibo, N. J.M.: OsICE1 transcription factor improves photosynthetic performance and reduces grain losses in rice plants subjected to drought. Environmental and Experimental Botany 150, pp. 88 - 98 (2018)

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42.

Journal Article

Chen, J.; Wang, J.; Chen, W.; Sun, W.; Peng, M.; Yuan, Z.; Shen, S.; Xie, K.; Jin, C.; Sun, Y. et al.; Liu, X.; Fernie, A. R.; Yu, S.; Luo, J.: Metabolome Analysis of Multi-Connected Biparental Chromosome Segment Substitution Line Populations. Plant Physiology 178 (2), pp. 612 - 625 (2018)

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43.

Journal Article

Ciarmiello, L. F.; Di Maro, A.; Woodrow, P.; Annunziata, M. G.; Kafantaris, I.; Mirto, A.; Iannuzzi, F.; Fuggi, A.; Carillo, P.: Unveiling the Enigmatic Structure of TdCMO Transcripts in Durum Wheat. Agronomy 8 (11), 270 (2018)

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44.

Journal Article

Claassens, N. J.; Sánchez-Andrea, I.; Sousa, D.Z.; Bar-Even, A.: Towards sustainable feedstocks: A guide to electron donors for microbial carbon fixation. Current Opinion in Biotechnology 50, pp. 195 - 205 (2018)

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45.

Journal Article

Cotton, C. A. R.; Edlich-Muth, C.; Bar-Even, A.: Reinforcing carbon fixation: CO2 reduction replacing and supporting carboxylation. Current Opinion in Biotechnology 49 (Supplement C), pp. 49 - 56 (2018)

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46.

Journal Article

Cubillos, A.; Tong, H.; Alseekh, S.; de Abreu e Lima, F.; Yu, J.; Fernie, A. R.; Nikoloski, Z.; Laitinen, R.: Inheritance patterns in metabolism and growth in diallel crosses of Arabidopsis thaliana from a single growth habitat. Heredity 120, pp. 463 - 473 (2018)

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47.

Journal Article

Cui, X.; Wang, Y.; Ren, Y.; Fernie, A. R.; Alseekh, S.; He, H.; Gong, G.; Zhang, H.; Guo, S.; Zhang, J. et al.; Xu, Y.: Variance analysis of metabolite components between low sugar wild and high sugar cultivated watermelon fruits. Acta Horticulturae Sinica 45 (4), pp. 775 - 783 (2018)

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48.

Journal Article

Dalal, V.; Dagan, S.; Friedlander, G.; Aviv, E.; Bock, R.; Charuvi, D.; Reich, Z.; Adam, Z.: Transcriptome analysis highlights nuclear control of chloroplast development in the shoot apex. Scientific Reports 8 (1), 8881 (2018)

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49.

Journal Article

de Abreu e Lima, F.; Li, K.; Wen, W.; Yan, J.; Nikoloski, Z.; Willmitzer, L.; Brotman, Y.: Unraveling lipid metabolism in maize with time-resolved multi-omics data. The Plant Journal 93 (6), pp. 1102 - 1115 (2018)

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50.

Journal Article

de Abreu e Lima, F.; Willmitzer, L.; Nikoloski, Z.: Classification-driven framework to predict maize hybrid field performance from metabolic profiles of young parental roots. PLoS One 13 (4), e0196038 (2018)

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Publications of the institute

Journal Article (183)