Publications of the MPI

1.

Journal Article

Fu, H.-Y.; Ghandour, R.; Ruf, S.; Zoschke, R.; Bock, R.; Schöttler, M. A.: The availability of neither D2 nor CP43 limits the biogenesis of photosystem II in tobacco. Plant Physiology 185 (3), pp. 1111 - 1130 (2020)

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2.

Journal Article

Leskow, C. C.; Conte, M.; del Pozo, T.; Bermúdez, L.; Lira, B. S.; Gramegna, G.; Baroli, I.; Burgos, E.; Zavallo, D.; Kamenetzky, L. et al.; Asís, R.; Gonzalez, M.; Fernie, A. R.; Rossi, M.; Osorio, S.; Carrari, F.: The cytosolic invertase NI6 affects vegetative growth, flowering, fruit set and yield in tomato. Journal of Experimental Botany 72 (7), pp. 2525 - 2543 (2020)

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3.

Journal Article

Naake, T.; Maeda, H. A.; Proost, S.; Tohge, T.; Fernie, A. R.: Kingdom-wide analysis of the evolution of the plant type III polyketide synthase superfamily. Plant Physiology (2020)

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4.

Journal Article

Pignocchi, C.; Ivakov, A.; Feil, R.; Trick, M.; Pike, M.; Wang, T. L.; Lunn, J. E.; Smith, A. M.: Restriction of cytosolic sucrose hydrolysis profoundly alters development, metabolism and gene expression in Arabidopsis roots. Journal of Experimental Botany 72 (5), pp. 1850 - 1863 (2020)

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5.

Journal Article

Burgos, E.; Luca, D.; Belen, M.; Diouf, I.; de Haro; A., L.; Albert, E.; Sauvage, C.; Jian Tao, Z.; Bermudez, L. et al.; Asís, R.; Nunes Nesi, A.; Matringe, M.; Brehelin, C.; Guiraud, T.; Ferrand, C.; Atienza, I.; Jorly, J.; Mauxion, J. P.; Baldet, P.; Fernie, A. R.; Quadrana, L.; Rothan, C.; Causse, M.; Carrari, F.: Validated MAGIC and GWAS populations mapping reveal the link between vitamin E contents and natural variation in chorismate metabolism in tomato. The Plant Journal (2020)

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6.

Journal Article

Di Vittori, V.; Bitocchi, E.; Rodriguez, M.; Alseekh, S.; Bellucci, E.; Nanni, L.; Gioia, T.; Marzario, S.; Logozzo, G.; Rossato, M. et al.; De Quattro, C.; Murgia, M. L.; Ferreira, J. J.; Campa, A.; Xu, C.; Fiorani, F.; Sampathkumar, A.; Fröhlich, A.; Attene, G.; Delledonne, M.; Usadel, B.; Fernie, A. R.; Rau, D.; Papa, R.: Pod indehiscence in common bean is associated to the fine regulation of PvMYB26. Journal of Experimental Botany 72 (5), pp. 1617 - 1633 (2020)

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7.

Journal Article

Moreno, J.C.; Mi, J.; Alagoz, Y.; Al-Babili, S.: Plant Apocarotenoids: From Retrograde Signaling to Interspecific Communication. The Plant Journal (2020)

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8.

Journal Article

Popov, V. N.; Syromyatnikov, M. Y.; Fernie, A. R.; Chakraborty, S.; Gupta, K. J.; Igamberdiev, A. U.: The uncoupling of respiration in plant mitochondria: Keeping reactive oxygen and nitrogen species under control. Journal of Experimental Botany (2020)

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9.

Journal Article

Razaghi-Moghadam, Z.; Nikoloski, Z.: GeneReg: A constraint-based approach for design of feasible metabolic engineering strategies at the gene level. Bioinformatics (2020)

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10.

Journal Article

Davies, B.; Roberts, J.; Raines, C.; Lunn, J. E.: Retirement of Mary Traynor, executive editor of JXB (1995–2020). Journal of Experimental Botany 71 (19), pp. 5719 - 5720 (2020)

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11.

Journal Article

Nakamura, M.; Batista, R. A.; Köhler, C.; Hennig, L.: Polycomb Repressive Complex 2-mediated histone modification H3K27me3 is associated with embryogenic potential in Norway spruce. Journal of Experimental Botany 71 (20), pp. 6366 - 6378 (2020)

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12.

Journal Article

Zaborowski, A. B.; Walther, D.: Determinants of correlated expression of transcription factors and their target genes. Nucleic Acids Research 48 (20), pp. 11347 - 11369 (2020)

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13.

Journal Article

Feitosa-Araujo, E.; da Fonseca Pereira, P.; Miranda Pena, M.; Medeiros, D.B.; de Souza, L. P.; Yoshida, T.; Weber, A. P.M.; Araújo, W. L.; Fernie, A. R.; Schwarzländer, M. et al.; Nunes-Nesi, A.: Changes in intracellular NAD status affect stomatal development in an abscisic acid-dependent manner. The Plant Journal (2020)

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14.

Journal Article

Cotton, C. A. R.; Bernhardsgrütter, I.; He, H.; Burgener, S.; Schulz, L.; Paczia, N.; Dronsella, B.; Erban, A.; Toman, S.; Dempfle, M. et al.; de Maria, A.; Kopka, J.; Lindner, S. N.; Erb, T. J.; Bar-Even, A.: Underground isoleucine biosynthesis pathways in E. coli. eLife 9, e54207 (2020)

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15.

Journal Article

Ramirez, L. C.; Calvo Tusell, C.; Stoffel, G. M. M.; Lindner, S. N.; Osuna, S.; Erb, T. J.; Garcia-Borràs, M.; Bar-Even, A.; Acevedo-Rocha, C. G.: In vivo selection for formate dehydrogenases with high efficiency and specificity towards NADP+. ACS Catalysis 10, pp. 7512 - 7525 (2020)

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16.

Journal Article

Sewelam, N.; Brilhaus, D.; Bräutigam, A.; Alseekh, S.; Fernie, A. R.; Maurino, V. G.: Molecular plant responses to combined abiotic stresses put a spotlight on unknown and abundant genes. Journal of Experimental Botany 71 (16), pp. 5098 - 5112 (2020)

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17.

Journal Article

Zhu, F.; Luo, T.; Liu, C.; Wang, Y.; Zheng, L.; Xiao, X.; Zhang, M.; Yang, H.; Yang, W.; Xu, R. et al.; Zeng, Y.; Ye, J.; Xu, J.; Xu, J.; Larkin, R. M.; Wang, P.; Wen, W.; Deng, X.; Fernie, A. R.; Cheng, Y.: A NAC transcription factor and its interaction protein hinder abscisic acid biosynthesis by synergistically repressing NCED5 in Citrus reticulata. Journal of Experimental Botany 71 (12), pp. 3613 - 3625 (2020)

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18.

Journal Article

Borghi, M.; Fernie, A. R.: Outstanding questions in flower metabolism. The Plant Journal 103 (4), pp. 1275 - 1288 (2020)

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19.

Journal Article

Cesarino, I.; Ioio, R. D.; Kirschner, G. K.; Ogden, M.; Picard, K. L.; Rast-Somssich, M. I.; Somssich, M.: Plant Science’s Next Top Models. Annals of Botany 126 (1), pp. 1 - 23 (2020)

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20.

Journal Article

Zhang, Y.; Fernie, A. R.: Stable and temporary enzyme complexes and metabolons involved in energy and redox metabolism. ANTIOXIDANTS & REDOX SIGNALING (2020)

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21.

Journal Article

Brito, D. S.; Agrimi, G.; Charton, L.; Brilhaus, D.; Bitetto, M. G.; Lana-Costa, J.; Messina, E.; Nascimento, C. P.; Araújo, E. F.; Viana Pires, M. et al.; Pérez-Díaz, J. L.; Obata, T.; Porcelli, V.; Palmieri, L.; Araújo, W. L.; Weber, A. P. M.; Linka, N.; Fernie, A. R.; Palmieri, F.; Nunes-Nesi, A.: Biochemical and Functional Characterization of a Mitochondrial Citrate Carrier in Arabidopsis thaliana. Biochemical Journal 477 (9), pp. 1759 - 1777 (2020)

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22.

Journal Article

Nowak, J.; Gennermann, K.; Persson, S.; Nikoloski, Z.: CytoSeg 2.0: automated extraction of actin filaments. Bioinformatics 36 (9), pp. 2950 - 2951 (2020)

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23.

Journal Article

Aarabi, F.; Naake, T.; Fernie, A. R.; Hoefgen, R.: Coordinating Sulfur Pools under Sulfate Deprivation. Trends in Plant Science 25 (12), pp. 1227 - 1239 (2020)

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24.

Journal Article

Agrawal, S.; Karcher, D.; Ruf, S.; Bock, R.: The Functions of Chloroplast Glutamyl-tRNA in Translation and Tetrapyrrole Biosynthesis. Plant Physiology 183 (1), pp. 263 - 276 (2020)

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25.

Journal Article

Aksenov, A.A.; Laponogov, I.; Zhang, Z.; Doran, S.L.F.; Belluomo, I.; Veselkov, D.; Bittremieux, W.; Nothias, L.F.; Nothias-Esposito, M.; Maloney, K.N. et al.; Misra, B.B.; Melnik, A.V.; Smirnov, A.; Du, X.; Jones, K.L.; Dorrestein, K.; Panitchpakdi, M.; Ernst, M.; van der Hooft, J.J.J.; Gonzalez, M.; Carazzone, C.; Amézquita, A.; Callewaert, C.; Morton, J.T.; Quinn, R.A.; Bouslimani, A.; Orio, A.A.; Petras, D.; Smania, A.M.; Couvillion, S.P.; Burnet, M.C.; Nicora, C.D.; Zink, E.; Metz, T.O.; Artaev, V.; Humston-Fulmer, E.; Gregor, R.; Meijler, M.M.; Mizrahi, I.; Eyal, S.; Anderson, B.; Dutton, R.; Lugan, R.; Boulch, P.L.; Guitton, Y.; Prevost, S.; Poirier, A.; Dervilly, G.; Le Bizec, B.; Fait, A.; Persi, N.S.; Song, C.; Gashu, K.; Coras, R.; Guma, M.; Manasson, J.; Scher, J.U.; Barupal, D.K.; Alseekh, S.; Fernie, A. R.; Mirnezami, R.; Vasiliou, V.; Schmid, R.; Borisov, R.S.; Kulikova, L.N.; Knight, R.; Wang, M.; Hanna, G.B.; Dorrestein, P.C.; Veselkov, K.: Auto-deconvolution and molecular networking of gas chromatography-mass spectrometry data. Nature Biotechnology 39, pp. 169 - 173 (2020)

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26.

Journal Article

Alseekh, S.; Ofner, I.; Liu, Z.; Osorio, S.; Vallarino, J. G.; Last, R. L.; Zamir, D.; Tohge, T.; Fernie, A. R.: Quantitative trait loci analysis (QTL) of seed specialized metabolites reveals seed-specific flavonols and differential regulation of glycoalkaloid content in tomato. The Plant Journal 103 (6), pp. 2007 - 2024 (2020)

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27.

Journal Article

Alseekh, S.; Scossa, F.; Fernie, A. R.: Mobile Transposable Elements Shape Plant Genome Diversity. Trends in Plant Science 25 (11), pp. 1062 - 1064 (2020)

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28.

Journal Article

Alseekh, S.; de Souza, L. P.; Benina, M.; Fernie, A. R.: The Style and Substance of Plant Flavonoid decoration; Towards Defining both Structure and Function. Phytochemistry 174, 112347 (2020)

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29.

Journal Article

Alves, R. D. F. B.; Menezes-Silva, P. E.; Sousa, L. F.; Loram-Lourenco, L.; Silva, M. L. F.; Almeida, S. E. S.; Silva, F. G.; de Souza, L. P.; Fernie, A. R.; Farnese, F. S.: Evidence of drought memory in Dipteryx alata indicates differential acclimation of plants to savanna conditions. Scientific Reports 10 (1), 16455 (2020)

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30.

Journal Article

Armbruster, U.; Strand, D.: Regulation of chloroplast primary metabolism. Photosynthesis Research 145 (1), pp. 1 - 3 (2020)

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31.

Journal Article

Artiukhov V, A.; Grabarska, A.; Gumbarewicz, E.; Aleshin, V. A.; Kaehne, T.; Obata, T.; Kazantsev V, A.; Lukashev V, N.; Stepulak, A.; Fernie, A. R. et al.; Bunik I, V.: Synthetic analogues of 2-oxo acids discriminate metabolic contribution of the 2-oxoglutarate and 2-oxoadipate dehydrogenases in mammalian cells and tissues. Scientific Reports 10 (1), 1886 (2020)

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32.

Journal Article

Aslan, S.; Noor, E.; Benito-Vaquerizo, S.; Lindner, S. N.; Bar-Even, A.: Design and engineering of E. coli metabolic sensor strains with a wide sensitivity range for glycerate. Metabolic Engineering 57, pp. 96 - 109 (2020)

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33.

Journal Article

Aucique-Pérez, C.E.; Resende, R.S.; Martins, A.O.; Silveira, P.R.; Cavalcanti, J.H.F.; Vieira, N.M.; Fernie, A. R.; Araújo, W.L.; DaMatta, F.M.; Rodrigues, F.Á.: How do wheat plants cope with Pyricularia oryzae infection? A physiological and metabolic approach. Planta 252 (2), 24 (2020)

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34.

Journal Article

Baena-González, E.; Lunn, J. E.: SnRK1 and trehalose 6-phosphate – two ancient pathways converge to regulate plant metabolism and growth. Current Opinion in Plant Biology 55, pp. 52 - 59 (2020)

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35.

Journal Article

Barsh, G. S.; Copenhaver, G. P.; Köhler, C.; Qu, L.-J.: Kingdom Come. PLoS Genetics 16 (11), e1009178 (2020)

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36.

Journal Article

Batista, R. A.; Köhler, C.: Genomic imprinting in plants-revisiting existing models. Genes and Development 34 (1-2), pp. 24 - 36 (2020)

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37.

Journal Article

Bianchetti, R.; De Luca, B.; de Haro, L.A.; Rosado, D.; Demarco, D.; Conte, M.; Bermudez, L.; Freschi, L.; Fernie, A. R.; Michaelson, L.V. et al.; Haslam, R.P.; Rossi, M.; Carrari, F.: Phytochrome-Dependent Temperature Perception Modulates Isoprenoid Metabolism. Plant Physiology 183 (3), pp. 869 - 882 (2020)

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38.

Journal Article

Breitel, D.; Brett, P.; Alseekh, S.; Fernie, A. R.; Butelli, E.; Martin, C.: Metabolic engineering of tomato fruit enriched in L-DOPA. Metabolic Engineering 65, pp. 185 - 196 (2020)

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39.

Journal Article

Cerda, A.; Moreno, J.C.; Acosta, D.; Godoy, F.; Cáceres, J. C.; Cabrera, R.; Stange, C.: Functional characterization and in silico modelling of MdPSY2 variants and MdPSY5 phytoene synthases from Malus domestica. Journal of Plant Physiology 249, 153166 (2020)

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40.

Journal Article

Chen, M.-X.; Zhang, Y.; Fernie, A. R.; Liu, Y.-G.; Zhu, F.-Y.: SWATH-MS-Based Proteomics: Strategies and Applications in Plants. Trends in Biotechnology 39 (5), pp. 433 - 437 (2020)

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41.

Journal Article

Chen, J.; Hu, X.; Shi, T.; Yin, H.; Sun, D.; Hao, Y.; Xia, X.; Luo, J.; Fernie, A. R.; He, Z. et al.; Chen, W.: Metabolite-based genome-wide association study enables dissection of the flavonoid decoration pathway of wheat kernels. Plant Biotechnology Journal 18 (8), pp. 1722 - 1735 (2020)

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42.

Journal Article

Chen, M.-X.; Zhu, F.-Y.; Gao, B.; Ma, K.-L.; Zhang, Y.; Fernie, A. R.; Chen, X.; Dai, L.; Ye, N.-H.; Zhang, X. et al.; Tian, Y.; Zhang, D.; Xiao, S.; Zhang, J.; Liu, Y.-G.: Full-length transcript-based proteogenomics of rice improves its genome and proteome annotation. Plant Physiology 182 (3), pp. 1510 - 1526 (2020)

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43.

Journal Article

Chodasiewicz, M.; Sokolowska, E.; Nelson-Dittrich, A. C.; Masiuk, A.; Moreno, J.C.; Nelson, A. D. L.; Skirycz, A.: Identification and Characterization of the Heat-Induced Plastidial Stress Granules Reveal New Insight Into Arabidopsis Stress Response. Frontiers in Plant Science 11, 597592 (2020)

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44.

Journal Article

Chorianopoulou, S. N.; Sigalas, P. P.; Tsoutsoura, N.; Apodiakou, A.; Saridis, G.; Ventouris, Y. E.; Bouranis, D. L.: Regulation of Sulfur Homeostasis in Mycorrhizal Maize Plants Grown in a Fe-Limited Environment. International Journal of Molecular Sciences 21 (9), 3249 (2020)

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45.

Journal Article

Claassens, N. J.; Bordanaba-Florit, G.; Cotton, C. A. R.; de Maria, A.; Finger-Bou, M.; Friedeheim, L.; Giner-Laguarda, N.; Munar-Palmer, M.; Newell, W.; Scarinci, G. et al.; Verbunt, J.; de Vries, S.T.; Yilmaz, S.; Bar-Even, A.: Replacing the Calvin cycle with the reductive glycine pathway in Cupriavidus necator. Metabolic Engineering 62, pp. 30 - 41 (2020)

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46.

Journal Article

Claassens, N. J.; Scarinci, G.; Fischer, A.; Flamholz, A.I.; Newell, W.; Frielingsdorf, S.; Lenz, O.; Bar-Even, A.: Phosphoglycolate salvage in a chemolithoautotroph using the Calvin cycle. Proceedings of the National Academy of Sciences of the United States of America 117 (36), pp. 22452 - 22461 (2020)

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47.

Journal Article

Clemente-Moreno, M.; Omranian, N.; Sáez, P.; Figueroa, C.; Del-Saz, N.; Elso, M.; Poblete, L.; Orf, I.; Cuadros-Inostroza, A.; Cavieres, L.A. et al.; Bravo, L.; Fernie, A. R.; Ribas-Carbó, M.; Flexas, J.; Nikoloski, Z.; Brotman, Y.; Gago, J.: Low temperature tolerance of the Antarctic species Deschampsia antarctica: a complex metabolic response associated with nutrient remobilization. Plant, Cell and Environment 43 (6), pp. 1376 - 1393 (2020)

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48.

Journal Article

Correa Galvis, V.; Strand, D.; Messer, M.; Thiele, W.; Bethmann, S.; Hübner, D.; Uflewski, M.; Kaiser, E.; Siemiatkowska, B.; Morris, B. A. et al.; Toth, S. Z.; Watanabe, M.; Brückner, F.; Hoefgen, R.; Jahns, P.; Schöttler, M. A.; Armbruster, U.: H+ transport by K+ EXCHANGE ANTIPORTER3 promotes photosynthesis and growth in chloroplast ATP synthase mutants. Plant Physiology 182, pp. 2126 - 2142 (2020)

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49.

Journal Article

Correa, S. M.; Alseekh, S.; Atehortúa, L.; Brotman, Y.; Ríos-Estepa, R.; Fernie, A. R.; Nikoloski, Z.: Model-assisted identification of metabolic engineering strategies for Jatropha curcas lipid pathways. The Plant Journal (accepted)

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50.

Journal Article

Correa, S. M.; Fernie, A. R.; Nikoloski, Z.; Brotman, Y.: Towards model-driven characterization and manipulation of plant lipid metabolism. Progress in Lipid Research 80, 101051 (2020)

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Publications of the institute

Journal Article (239)