Publications of the MPI

1.

Journal Article

Noutsos, C.; Kleine, T.; Armbruster, U.; DalCorso, G.; Leister, D.: Nuclear insertions of organellar DNA can create novel patches of functional exon sequences. Trends in Genetics 23 (12), pp. 597 - 601 (2007)

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2.

Journal Article

Leroy, O.; Hennig, L.; Breuninger, H.; Laux, T.; Köhler, C.: Polycomb group proteins function in the female gametophyte to determine seed development in plants. Development 134 (20), pp. 3639 - 3648 (2007)

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3.

Journal Article

Siddique, I.; Gutjahr, C.; Seneviratne, G.; Breckling, B.; Ranwala, S.; Alexander, I.: Changes in soil chemistry associated with the establishment of forest gardens on eroded, acidified grassland soils in Sri Lanka. Biology and Fertility of Soils 44 (1), pp. 163 - 170 (2007)

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4.

Journal Article

Ahmadabadi, M.; Ruf, S.; Bock, R.: A leaf-based regeneration and transformation system for maize (Zea mays L.). Transgenic Research 16 (4), pp. 437 - 448 (2007)

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5.

Journal Article

Ainsworth, E. A.; Rogers, A.; Leakey, A. D. B.; Heady, L. E.; Gibon, Y.; Stitt, M.; Schurr, U.: Does elevated atmospheric [CO2] alter diurnal C uptake and the balance of C and N metabolites in growing and fully expanded soybean leaves? Journal of Experimental Botany 58 (3), pp. 579 - 591 (2007)

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6.

Journal Article

Alhagdow, M.; Mounet, F.; Gilbert, L.; Nunes-Nesi, A.; Garcia, V.; Just, D.; Petit, J.; Beauvoit, B.; Fernie, A. R.; Rothan, C. et al.; Baldet, P.: Silencing of the mitochondrial ascorbate synthesizing enzyme L-galactono-1,4-lactone dehydrogenase affects plant and fruit development in tomato(1[w][OA]). Plant Physiology 145 (4), pp. 1408 - 1422 (2007)

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7.

Journal Article

Bannigan, A.; Scheible, W.-R.; Lukowitz, W.; Fagerstrom, C.; Wadsworth, P.; Somerville, C.; Baskin, T. I.: A conserved role for kinesin-5 in plant mitosis. Journal of Cell Science 120 (16), pp. 2819 - 2827 (2007)

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8.

Journal Article

Baxter, C. J.; Liu, J. L.; Fernie, A. R.; Sweetlove, L. J.: Determination of metabolic fluxes in a non-steady-state system. Phytochemistry 68 (16-18), pp. 2313 - 2319 (2007)

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9.

Journal Article

Baxter, C. J.; Redestig, H.; Schauer, N.; Repsilber, D.; Patil, K. R.; Nielsen, J.; Selbig, J.; Liu, J. L.; Fernie, A. R.; Sweetlove, L. J.: The metabolic response of heterotrophic Arabidopsis cells to oxidative stress. Plant Physiology 143 (1), pp. 312 - 325 (2007)

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10.

Journal Article

Bieniawska, Z.; Barratt, D. H. P.; Garlick, A. P.; Thole, V.; Kruger, N. J.; Martin, C.; Zrenner, R.; Smith, A. M.: Analysis of the sucrose synthase gene family in Arabidopsis. Plant Journal 49 (5), pp. 810 - 828 (2007)

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11.

Journal Article

Bock, R.: Towards plastid transformation in maize. ISB News Report 12, pp. 4 - 7 (2007)

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12.

Journal Article

Bohne, A. V.; Ruf, S.; Boerner, T.; Bock, R.: Faithful transcription initiation from a mitochondrial promoter in transgenic plastids. Nucleic Acids Research 35 (21), pp. 7256 - 7266 (2007)

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13.

Journal Article

Busch, F.; Huner, N. P. A.; Ensminger, I.: Increased air temperature during simulated autumn conditions does not increase photosynthetic carbon gain but affects the dissipation of excess energy in seedlings of the evergreen Conifer Jack Pine. Plant Physiology 143 (3), pp. 1242 - 1251 (2007)

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14.

Journal Article

Caldana, C.; Scheible, W.-R.; Mueller-Roeber, B.; Ruzicic, S.: A quantitative RT-PCR platform for high-throughput expression profiling of 2500 rice transcription factors. Plant Methods 3, p. 7 (2007)

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15.

Journal Article

Christian, N.; Handorf, T.; Ebenhoeh, O.: Metabolic Synergy: Increasing Biosynthetic Capabilities by Network Cooperation. Genome Informatics 18 (1), pp. 320 - 329 (2007)

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16.

Journal Article

Colditz, F.; Niehaus, K.; Krajinski, F.: Silencing of PR-10-like proteins in Medicago truncatula results in an antagonistic induction of other PR proteins and in an increased tolerance upon infection with the oomycete Aphanomyces euteiches. Planta 226 (1), pp. 57 - 71 (2007)

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17.

Journal Article

Dauwe, R.; Morreel, K.; Goeminne, G.; Gielen, B.; Rohde, A.; van Beeumen, J.; Ralph, J.; Boudet, A. M.; Kopka, J.; Rochange, S. F. et al.; Halpin, C.; Messens, E.; Boerjan, W.: Molecular phenotyping of lignin-modified tobacco reveals associated changes in cell-wall metabolism, primary metabolism, stress metabolism and photorespiration. Plant Journal 52 (2), pp. 263 - 285 (2007)

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18.

Journal Article

Die, J. V.; Dita, M. A.; Krajinski, F.; Gonzalez-Verdejo, C. I.; Rubiales, D.; Moreno, M. T.; Roman, B.: Identification by suppression subtractive hybridization and expression analysis of Medicago truncatula putative defence genes in response to Orobanche crenata parasitization. Physiological and Molecular Plant Pathology 70 (1-3), pp. 49 - 59 (2007)

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19.

Journal Article

Ding, L.; Hofius, D.; Hajirezaei, M.-R.; Fernie, A. R.; Bornke, F.; Sonnewald, U.: Functional analysis of the essential bifunctional tobacco enzyme 3-dehydroquinate dehydratase/shikimate dehydrogenase in transgenic tobacco plants. Journal of Experimental Botany 58 (8), pp. 2053 - 2067 (2007)

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20.

Journal Article

Engel, N.; van den Daele, K.; Kolukisaoglu, U.; Morgenthal, K.; Weckwerth, W.; Parnik, T.; Keerberg, O.; Bauwe, H.: Deletion of glycine decarboxylase in arabidopsis is lethal under nonphotorespiratory conditions. Plant Physiology 144 (3), pp. 1328 - 1335 (2007)

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21.

Journal Article

Erba, E. B.; Matthiesen, R.; Bunkenborg, J.; Schulze, W. X.; Di Stefano, P.; Cabodi, S.; Tarone, G.; Defilippi, P.; Jensen, O. N.: Quantitation of multisite EGF receptor phosphorylation using mass spectrometry and a novel normalization approach. Journal of Proteome Research 6 (7), pp. 2768 - 2785 (2007)

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22.

Journal Article

Fahnenstich, H.; Saigo, M.; Niessen, M.; Zanor, M. I.; Andreo, C. S.; Fernie, A. R.; Drincovich, M. F.; Flugge, U. I.; Maurino, V. G.: Alteration of organic acid metabolism in Arabidopsis overexpressing the maize C(4)NADP-malic enzyme causes accelerated senescence during extended darkness. Plant Physiology 145 (3), pp. 640 - 652 (2007)

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23.

Journal Article

Fieulaine, S.; Lunn, J. E.; Ferrer, J. L.: Crystal structure of a cyanobacterial sucrose-phosphatase in complex with glucose-containing disaccharides. Proteins-Structure Function and Bioinformatics 68 (3), pp. 796 - 801 (2007)

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24.

Journal Article

Footitt, S.; Dietrich, D.; Fait, A.; Fernie, A. R.; Holdsworth, M. J.; Baker, A.; Theodoulou, F. L.: The COMATOSE ATP-binding cassette transporter is required for full fertility in arabidopsis. Plant Physiology 144 (3), pp. 1467 - 1480 (2007)

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25.

Journal Article

Frankel, N.; Nunes-Nesi, A.; Balbo, I.; Mazuch, J.; Centeno, D.; Iusem, N. D.; Fernie, A. R.; Carrari, F.: ci21A/Asr1 expression influences glucose accumulation in potato tubers. Plant Molecular Biology 63 (5), pp. 719 - 730 (2007)

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26.

Journal Article

Gaude, N.; Brehelin, C.; Tischendorf, G.; Kessler, F.; Doermann, P.: Nitrogen deficiency in Arabidopsis affects galactolipid composition and gene expression and results in accumulation of fatty acid phytyl esters. Plant Journal 49 (4), pp. 729 - 739 (2007)

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27.

Journal Article

Gomez-Porras, J. L.; Riano-Pachon, D. M.; Dreyer, I.; Mayer, J. E.; Mueller-Roeber, B.: Genome-wide analysis of ABA-responsive elements ABRE and CE3 reveals divergent patterns in Arabidopsis and rice. BMC Genomics 8, p. 260 (2007)

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28.

Journal Article

Graham, J. W.; Williams, T. C.; Morgan, M.; Fernie, A. R.; Ratcliffe, R. G.; Sweetlove, L. J.: Glycolytic enzymes associate dynamically with mitochondria in response to respiratory demand and support substrate channeling. Plant Cell 19 (11), pp. 3723 - 3738 (2007)

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29.

Journal Article

Grimbs, S.; Selbig, J.; Bulik, S.; Holzhuetter, H. G.; Steuer, R.: The stability and robustness of metabolic states: identifying stabilizing sites in metabolic networks. Molecular Systems Biology 3, p. 146 (2007)

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30.

Journal Article

Handorf, T.; Ebenhoeh, O.: MetaPath Online: a web server implementation of the network expansion algorithm. Nucleic Acids Research 35 (Web Server issue), pp. W613 - W618 (2007)

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31.

Journal Article

Hannah, M. A.; Kraemer, K. M.; Geffroy, V.; Kopka, J.; Blair, M. W.; Erban, A.; Vallejos, C. E.; Heyer, A. G.; Sanders, F. E.; Millner, P. A. et al.; Pilbeam, D. J.: Hybrid weakness controlled by the dosage-dependent lethal (DL) gene system in common bean (Phaseolus vulgaris) is caused by a shoot-derived inhibitory signal leading to salicylic acid-associated root death. New Phytologist 176 (3), pp. 537 - 549 (2007)

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32.

Journal Article

Hernandez, G.; Ramirez, M.; Valdes-Lopez, O.; Tesfaye, M.; Graham, M. A.; Czechowski, T.; Schlereth, A.; Wandrey, M.; Erban, A.; Cheung, F. et al.; Wu, H. C.; Lara, M.; Town, C. D.; Kopka, J.; Udvardi, M. K.; Vance, C. P.: Phosphorus stress in common bean: Root transcript and metabolic responses. Plant Physiology 144 (2), pp. 752 - 767 (2007)

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33.

Journal Article

Hincha, D. K.; Livingston, D. P.; Premakumar, R.; Zuther, E.; Obel, N.; Cacela, C.; Heyer, A. G.: Fructans from oat and rye: Composition and effects on membrane stability during drying. Biochimica Et Biophysica Acta-Biomembranes 1768 (6), pp. 1611 - 1619 (2007)

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34.

Journal Article

Huege, J.; Sulpice, R.; Gibon, Y.; Lisec, J.; Koehl, K. I.; Kopka, J.: GC-EI-TOF-MS analysis of in vivo carbon-partitioning into soluble metabolite pools of higher plants by monitoring isotope dilution after 13CO2 labelling. Phytochemistry 68 (16-18), pp. 2258 - 2272 (2007)

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35.

Journal Article

Hummel, J.; Niemann, M.; Wienkoop, S.; Schulze, W.; Steinhauser, D.; Selbig, J.; Walther, D.; Weckwerth, W.: ProMEX: a mass spectral reference database for proteins and protein phosphorylation sites. BMC Bioinformatics 8, p. 216 (2007)

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36.

Journal Article

Kaplan, F.; Kopka, J.; Sung, D. Y.; Zhao, W.; Popp, M.; Porat, R.; Guy, C. L.: Transcript and metabolite profiling during cold acclimation of Arabidopsis reveals an intricate relationship of cold-regulated gene expression with modifications in metabolite content. Plant Journal 50 (6), pp. 967 - 981 (2007)

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37.

Journal Article

Kemmerling, B.; Schwedt, A.; Rodriguez, P.; Mazzotta, S.; Frank, M.; Qamar, S. A.; Mengiste, T.; Betsuyaku, S.; Parker, J. E.; Muessig, C. et al.; Thomma, B. P.; Albrecht, C.; de Vries, S. C.; Hirt, H.; Nurnberger, T.: The BRI1-associated kinase 1, BAK1, has a Brassinoli-independent role in plant cell-death control. Current Biology 17 (13), pp. 1116 - 1122 (2007)

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38.

Journal Article

Kempa, S.; Rozhon, W.; Samaj, J.; Erban, A.; Baluska, F.; Becker, T.; Haselmayer, J.; Schleiff, E.; Kopka, J.; Hirt, H. et al.; Jonak, C.: A plastid-localized glycogen synthase kinase 3 modulates stress tolerance and carbohydrate metabolism. Plant Journal 49 (6), pp. 1076 - 1090 (2007)

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39.

Journal Article

Koehl, K. I.: A tool for efficient data collection based on controlled vocabulary and the entity-value model. Journal fuer Verbraucherschutz und Lebensmittelsicherheit - Journal of Consumer Protection and Food Safety 2 (Supplement 1), pp. 90 - 91 (2007)

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40.

Journal Article

Kruger, R.; Wolschin, F.; Weckwerth, W.; Bettmer, J.; Lehmann, W. D.: Plant protein phosphorylation monitored by capillary liquid chromatography-element mass spectrometry. Biochemical and Biophysical Research Communications 355 (1), pp. 89 - 96 (2007)

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41.

Journal Article

Kusano, M.; Fukushima, A.; Arita, M.; Jonsson, P.; Moritz, T.; Kobayashi, M.; Hayashi, N.; Tohge, T.; Saito, K.: Unbiased characterization of genotype-dependent metabolic regulations by metabolomic approach in Arabidopsis thaliana. BMC Systems Biology 1, p. 53 (2007)

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42.

Journal Article

Kusterer, B.; Muminovic, J.; Utz, H. F.; Piepho, H. P.; Barth, S.; Heckenberger, M.; Meyer, R. C.; Altmann, T.; Melchinger, A. E.: Analysis of a triple testcross design with recombinant inbred lines reveals a significant role of epistasis in heterosis for biomass-related traits in Arabidopsis. Genetics 175 (4), pp. 2009 - 2017 (2007)

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43.

Journal Article

Kusterer, B.; Piepho, H. P.; Utz, H. F.; Schoen, C. C.; Muminovic, J.; Meyer, R. C.; Altmann, T.; Melchinger, A. E.: Heterosis for biomass-related traits in Arabidopsis investigated by quantitative trait loci analysis of the triple testcross design with recombinant inbred lines. Genetics 177 (3), pp. 1839 - 1850 (2007)

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44.

Journal Article

Laitinen, R. A.; Pollanen, E.; Teeri, T. H.; Elomaa, P.; Kotilainen, M.: Transcriptional analysis of petal organogenesis in Gerbera hybrida. Planta 226 (2), pp. 347 - 360 (2007)

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45.

Journal Article

Larrainzar, E.; Wienkoop, S.; Weckwerth, W.; Ladrera, R.; Arrese-Igor, C.; Gonzalez, E. M.: Medicago truncatula root nodule proteome analysis reveals differential plant and bacteroid responses to drought stress. Plant Physiology 144 (3), pp. 1495 - 1507 (2007)

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46.

Journal Article

Lehmann, W. D.; Kruger, R.; Salek, M.; Hung, C. W.; Wolschin, F.; Weckwerth, W.: Neutral loss-based phosphopeptide recognition: A collection of caveats. Journal of Proteome Research 6 (7), pp. 2866 - 2873 (2007)

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47.

Journal Article

Lemaitre, T.; Urbanczyk-Wochniak, E.; Flesch, V.; Bismuth, E.; Fernie, A. R.; Hodges, M.: NAD-dependent isocitrate dehydrogenase mutants of arabidopsis suggest the enzyme is not limiting for nitrogen assimilation. Plant Physiology 144 (3), pp. 1546 - 1558 (2007)

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48.

Journal Article

Leple, J. C.; Dauwe, R.; Morreel, K.; Storme, V.; Lapierre, C.; Pollet, B.; Naumann, A.; Kang, K. Y.; Kim, H.; Ruel, K. et al.; Lefebvre, A.; Joseleau, J. P.; Grima-Pettenati, J.; De Rycke, R.; Andersson-Gunneras, S.; Erban, A.; Fehrle, I.; Petit-Conil, M.; Kopka, J.; Polle, A.; Messens, E.; Sundberg, B.; Mansfield, S. D.; Ralph, J.; Pilate, G.; Boerjan, W.: Downregulation of cinnamoyl-coenzyme a reductase in poplar: multiple-level phenotyping reveals effects on cell wall polymer metabolism and structure. Plant Cell 19 (11), pp. 3669 - 3691 (2007)

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49.

Journal Article

Liu, C. M.; Willmund, F.; Golecki, J. R.; Cacace, S.; Hess, B.; Markert, C.; Schroda, M.: The chloroplast HSP70B-CDJ2-CGE1 chaperones catalyse assembly and disassembly of VIPP1 oligomers in Chlamydomonas. Plant Journal 50 (2), pp. 265 - 277 (2007)

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50.

Journal Article

Lohse, M.; Drechsel, O.; Bock, R.: OrganellarGenomeDRAW (OGDRAW): a tool for the easy generation of high-quality custom graphical maps of plastid and mitochondrial genomes. Current Genetics 52 (5-6), pp. 267 - 274 (2007)

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Publications of the institute

Journal Article (107)