Publications of the institute

Journal Article (160)

1.
Journal Article
Bernal, A. J.; Yoo, C.-M.; Mutwil, M.; Jensen, J. K.; Hou, G.; Blaukopf, C.; Sorensen, I.; Blancaflor, E. B.; Scheller, H. V.; Willats, W. G. T.: Functional Analysis of the Cellulose Synthase-Like Genes CSLD1, CSLD2, and CSLD4 in Tip-Growing Arabidopsis Cells. Plant Physiology 148 (3), pp. 1238 - 1253 (2008)
2.
Journal Article
Ainsworth, E. A.; Beier, C.; Calfapietra, C.; Ceulemans, R.; Durand-Tardif, M.; Farquhar, G. D.; Godbold, D. L.; Hendrey, G. R.; Hickler, T.; Kaduk, J. et al.; Karnosky, D. F.; Kimball, B. A.; Koerner, C.; Koornneef, M.; Lafarge, T.; Leakey, A. D. B.; Lewin, K. F.; Long, S. P.; Manderscheid, R.; Mcneil, D. L.; Mies, T. A.; Miglietta, F.; Morgan, J. A.; Nagy, J.; Norby, R. J.; Norton, R. M.; Percy, K. E.; Rogers, A.; Soussana, J. F.; Stitt, M.; Weigel, H. J.; White, J. W.: Next generation of elevated [CO2] experiments with crops: a critical investment for feeding the future world. Plant, Cell and Environment 31 (9), pp. 1317 - 1324 (2008)
3.
Journal Article
Allen, A. E.; LaRoche, J.; Maheswari, U.; Lommer, M.; Schauer, N.; Lopez, P. J.; Finazzi, G.; Fernie, A. R.; Bowler, C.: Whole-cell response of the pennate diatom Phaeodactylum tricornutum to iron starvation. Proceedings of the National Academy of Sciences of the United States of America 105 (30), pp. 10438 - 10443 (2008)
4.
Journal Article
Araujo, W. L.; Nunes-Nesi, A.; Trenkamp, S.; Bunik, V. I.; Fernie, A. R.: Inhibition of 2-Oxoglutarate Dehydrogenase in Potato Tuber Suggests the Enzyme Is Limiting for Respiration and Confirms Its Importance in Nitrogen Assimilation. Plant Physiology 148 (4), pp. 1782 - 1796 (2008)
5.
Journal Article
Aronsson, H.; Schöttler, M. A.; Kelly, A. A.; Sundqvist, C.; Doermann, P.; Karim, S.; Jarvis, P.: Monogalactosyldiacylglycerol deficiency in Arabidopsis affects pigment composition in the prolamellar body and impairs thylakoid membrane energization and photoprotection in leaves. Plant Physiology 148 (1), pp. 580 - 592 (2008)
6.
Journal Article
Arvidsson, S.; Kwasniewski, M.; Riano-Pachon, D. M.; Mueller-Roeber, B.: QuantPrime - a flexible tool for reliable high-throughput primer design for quantitative PCR. BMC Bioinformatics 9, p. 465 (2008)
7.
Journal Article
Balazadeh, S.; Parlitz, S.; Mueller-Roeber, B.; Meyer, R. C.: Natural developmental variations in leaf and plant senescence in Arabidopsis thaliana. Plant Biology (Stuttgart, Germany) 10 Suppl 1, pp. 136 - 147 (2008)
8.
Journal Article
Balazadeh, S.; Riano-Pachon, D. M.; Mueller-Roeber, B.: Transcription factors regulating leaf senescence in Arabidopsis thaliana. Plant Biology 10 Suppl 1, pp. 63 - 75 (2008)
9.
Journal Article
Basler, G.; Nikoloski, Z.; Ebenhoeh, O.; Handorf, T.: Biosynthetic potentials from species-specific metabolic networks. Genome Informatics 20, pp. 135 - 148 (2008)
10.
Journal Article
Benedito, V. A.; Torres-Jerez, I.; Murray, J. D.; Andriankaja, A.; Allen, S.; Kakar, K.; Wandrey, M.; Verdier, J.; Zuber, H.; Ott, T. et al.; Moreau, S.; Niebel, A.; Frickey, T.; Weiller, G.; He, J.; Dai, X. B.; Zhao, P. X.; Tang, Y. H.; Udvardi, M. K.: A gene expression atlas of the model legume Medicago truncatula. Plant Journal 55 (3), pp. 504 - 513 (2008)
11.
Journal Article
Bermudez, L.; Urias, U.; Milstein, D.; Kamenetzky, L.; Asis, R.; Fernie, A. R.; van Sluys, M. A.; Carrari, F.; Rossi, M.: A candidate gene survey of quantitative trait loci affecting chemical composition in tomato fruit. Journal of Experimental Botany 59 (10), pp. 2875 - 2890 (2008)
12.
Journal Article
Bieniawska, Z.; Espinoza, C.; Schlereth, A.; Sulpice, R.; Hincha, D. K.; Hannah, M. A.: Disruption of the Arabidopsis circadian clock is responsible for extensive variation in the cold-responsive transcriptome. Plant Physiology 147 (1), pp. 263 - 279 (2008)
13.
Journal Article
Boch, A.; Trampczynska, A.; Simm, C.; Taudte, N.; Kraemer, U.; Clemens, S.: Loss of Zhf and the tightly regulated zinc-uptake system SpZrt1 in Schizosaccharomyces pombe reveals the delicacy of cellular zinc balance. Fems Yeast Research 8 (6), pp. 883 - 896 (2008)
14.
Journal Article
Bock, R.; Timmis, J. N.: Reconstructing evolution: gene transfer from plastids to the nucleus. Bioessays 30 (6), pp. 556 - 566 (2008)
15.
Journal Article
Boettcher, C.; Centeno, D.; Freitag, J.; Hoefgen, R.; Koehl, K. I.; Kopka, J.; Kroymann, J.; Matros, A.; Mock, H.-P.; Neumann, S. et al.; Pfalz, M.; von Roepenack-Lahaye, E.; Schauer, N.; Trenkamp, S.; Zurbriggen, M.; Fernie, A. R.: Teaching (and learning from) metabolomics: The 2006 PlantMetaNet ETNA Metabolomics Research School. Physiologia Plantarum 132 (2), pp. 136 - 149 (2008)
16.
Journal Article
Bouyer, D.; Geier, F.; Kragler, F.; Schnittger, A.; Pesch, M.; Wester, K.; Balkunde, R.; Timmer, J.; Fleck, C.; Hulskamp, M.: Two-dimensional patterning by a trapping/depletion mechanism: the role of TTG1 and GL3 in Arabidopsis trichome formation. PLoS Biology 6 (6), p. e141 (2008)
17.
Journal Article
Brandes, U.; Delling, D.; Gaertler, M.; Gorke, R.; Hoefer, M.; Nikoloski, Z.; Wagner, D.: On modularity clustering. IEEE Transactions on Knowledge and Data Engineering 20 (2), pp. 172 - 188 (2008)
18.
Journal Article
Broholm, S. K.; Taehtiharju, S.; Laitinen, R. A.; Albert, V. A.; Teeri, T. H.; Elomaa, P.: A TCP domain transcription factor controls flower type specification along the radial axis of the Gerbera (Asteraceae) inflorescence. Proceedings of the National Academy of Sciences of the United States of America 105 (26), pp. 9117 - 9122 (2008)
19.
Journal Article
Brotman, Y.; Briff, E.; Viterbo, A.; Chet, I.: Role of swollenin, an expansin-like protein from Trichoderma, in plant root colonization. Plant Physiology 147 (2), pp. 779 - 789 (2008)
20.
Journal Article
Buhtz, A.; Springer, F.; Chappell, L.; Baulcombe, D. C.; Kehr, J.: Identification and characterization of small RNAs from the phloem of Brassica napus. Plant Journal 53 (5), pp. 739 - 749 (2008)
21.
Journal Article
Cartieaux, F.; Contesto, C.; Gallou, A.; Desbrosses, G.; Kopka, J.; Taconnat, L.; Renou, J. P.; Touraine, B.: Simultaneous interaction of Arabidopsis thaliana with Bradyrhizobium sp strain ORS278 and Pseudomonas syriugae pv. tomato DC3000 leads to complex transcriptome changes. Molecular Plant-Microbe Interactions 21 (2), pp. 244 - 259 (2008)
22.
Journal Article
Cavalier, D. M.; Lerouxel, O.; Neumetzler, L.; Yamauchi, K.; Reinecke, A.; Freshour, G.; Zabotina, O. A.; Hahn, M. G.; Burgert, I.; Pauly, M. et al.; Raikhel, N. V.; Keegstra, K.: Disrupting two Arabidopsis thaliana xylosyltransferase genes results in plants deficient in xyloglucan, a major primary cell wall component. Plant Cell 20 (6), pp. 1519 - 1537 (2008)
23.
Journal Article
Centeno, D. C.; Oliver, S. N.; Nunes-Nesi, A.; Geigenberger, P.; Machado, D. N.; Loureiro, M. E.; Silva, M. A. P.; Fernie, A. R.: Metabolic regulation of pathways of carbohydrate oxidation in potato (Solanum tuberosum) tubers. Physiologia Plantarum 133 (4), pp. 744 - 754 (2008)
24.
Journal Article
Chen, S.; Hajirezaei, M.-R.; Zanor, M. I.; Hornyik, C.; Debast, S.; Lacomme, C.; Fernie, A. R.; Sonnewald, U.; Bornke, F.: RNA interference-mediated repression of sucrose-phosphatase in transgenic potato tubers (Solanum tuberosum) strongly affects the hexose-to-sucrose ratio upon cold storage with only minor effects on total soluble carbohydrate accumulation. Plant, Cell and Environment 31 (1), pp. 165 - 176 (2008)
25.
Journal Article
Chincinska, I. A.; Liesche, J.; Krugel, U.; Michalska, J.; Geigenberger, P.; Grimm, B.; Kuhn, C.: Sucrose transporter StSUT4 from potato affects flowering, tuberization, and shade avoidance response. Plant Physiology 146 (2), pp. 515 - 528 (2008)
26.
Journal Article
Christensen, A.; Svensson, K.; Persson, S.; Jung, J.; Michalak, M.; Widell, S.; Sommarin, M.: Functional characterization of Arabidopsis calreticulin1a: A key alleviator of endoplasmic reticulum stress. Plant and Cell Physiology 49 (6), pp. 912 - 924 (2008)
27.
Journal Article
Correa, L. G.; Riano-Pachon, D. M.; Schrago, C. G.; dos Santos, R. V.; Mueller-Roeber, B.; Vincentz, M.: The role of bZIP transcription factors in green plant evolution: adaptive features emerging from four founder genes. PLoS One 3 (8), p. e2944 (2008)
28.
Journal Article
Crowhurst, R. N.; Gleave, A. P.; MacRae, E. A.; Ampomah-Dwamena, C.; Atkinson, R. G.; Beuning, L. L.; Bulley, S. M.; Chagne, D.; Marsh, K. B.; Matich, A. J. et al.; Montefiori, M.; Newcomb, R. D.; Schaffer, R. J.; Usadel, B.; Allan, A. C.; Boldingh, H. L.; Bowen, J. H.; Davy, M. W.; Eckloff, R.; Ferguson, A. R.; Fraser, L. G.; Gera, E.; Hellens, R. P.; Janssen, B. J.; Klages, K.; Lo, K. R.; MacDiarmid, R. M.; Nain, B.; McNeilage, M. A.; Rassam, M.; Richardson, A. C.; Rikkerink, E. H. A.; Ross, G. S.; Schroeder, R.; Snowden, K. C.; Souleyre, E. J. F.; Templeton, M. D.; Walton, E. F.; Wang, D.; Wang, M. Y.; Wang, Y. Y.; Wood, M.; Wu, R. M.; Yauk, Y. K.; Laing, W. A.: Analysis of expressed sequence tags from Actinidia: Applications of a cross species EST database for gene discovery in the areas of flavor, health, color and ripening. BMC Genomics 9, p. 351 (2008)
29.
Journal Article
D'Antuono, A. L.; Ott, T.; Krusell, L.; Voroshilova, V.; Ugalde, R. A.; Udvardi, M. K.; Lepek, V. C.: Defects in rhizobial cyclic glucan and lipopolysaccharide synthesis alter legume gene expression during nodule development. Molecular Plant-Microbe Interactions 21 (1), pp. 50 - 60 (2008)
30.
Journal Article
DaMatta, F. M.; Cunha, R. L.; Antunes, W. C.; Martins, S. C. V.; Araujo, W. L.; Fernie, A. R.; Moraes, G. A. B. K.: In field-grown coffee trees source-sink manipulation alters photosynthetic rates, independently of carbon metabolism, via alterations in stomatal function. New Phytologist 178 (2), pp. 348 - 357 (2008)
31.
Journal Article
Doehlemann, G.; Wahl, R.; Horst, R. J.; Voll, L. M.; Usadel, B.; Poree, F.; Stitt, M.; Pons-Kuhnemann, J.; Sonnewald, U.; Kahmann, R. et al.; Kamper, J.: Reprogramming a maize plant: transcriptional and metabolic changes induced by the fungal biotroph Ustilago maydis. Plant Journal 56 (2), pp. 181 - 195 (2008)
32.
Journal Article
Durek, P.; Walther, D.: The integrated analysis of metabolic and protein interaction networks reveals novel molecular organizing principles. BMC Systems Biology 2, p. 100 (2008)
33.
Journal Article
Dworschak, S.; Grell, S.; Nikiforova, V. J.; Schaub, T.; Selbig, J.: Modeling biological networks by action languages via answer set programming. Constraints 13 (1-2), pp. 21 - 65 (2008)
34.
Journal Article
Ebert, B.; Melle, C.; Lieckfeldt, E.; Zoeller, D.; von Eggeling, F.; Fisahn, J.: Protein profiling of single epidermal cell types from Arabidopsis thaliana using surface-enhanced laser desorption and ionization technology. Journal of Plant Physiology 165 (12), pp. 1227 - 1237 (2008)
35.
Journal Article
Ehlert, B.; Hincha, D. K.: Chlorophyll fluorescence imaging accurately quantifies freezing damage and cold acclimation responses in Arabidopsis leaves. Plant Methods 4, p. 12 (2008)
36.
Journal Article
Ehlert, B.; Schöttler, M. A.; Tischendorf, G.; Ludwig-Mueller, J.; Bock, R.: The paramutated SULFUREA locus of tomato is involved in auxin biosynthesis. Journal of Experimental Botany 59 (13), pp. 3635 - 3647 (2008)
37.
Journal Article
Eisenhut, M.; Huege, J.; Schwarz, D.; Bauwe, H.; Kopka, J.; Hagemann, M.: Metabolome Phenotyping of Inorganic Carbon Limitation in Cells of the Wild Type and Photorespiratory Mutants of the Cyanobacterium Synechocystis sp Strain PCC 6803. Plant Physiology 148 (4), pp. 2109 - 2120 (2008)
38.
Journal Article
Ensminger, I.; Schmidt, L.; Lloyd, J.: Soil temperature and intermittent frost modulate the rate of recovery of photosynthesis in Scots pine under simulated spring conditions. New Phytologist 177 (2), pp. 428 - 442 (2008)
39.
Journal Article
Espinoza, C.; Bieniawska, Z.; Hincha, D. K.; Hannah, M. A.: Interactions between the circadian clock and cold-response in Arabidopsis. Plant Signaling & Behavior 3 (8), pp. 593 - 594 (2008)
40.
Journal Article
Fait, A.; Fromm, H.; Walther, D.; Galili, G.; Fernie, A. R.: Highway or byway: the metabolic role of the GABA shunt in plants. Trends in Plant Science 13 (1), pp. 14 - 19 (2008)
41.
Journal Article
Fait, A.; Hanhineva, K.; Beleggia, R.; Dai, N.; Rogachev, I.; Nikiforova, V. J.; Fernie, A. R.; Aharoni, A.: Reconfiguration of the achene and receptacle metabolic networks during strawberry fruit development. Plant Physiology 148 (2), pp. 730 - 750 (2008)
42.
Journal Article
Falkenberg, B.; Witt, I.; Zanor, M. I.; Steinhauser, D.; Mueller-Roeber, B.; Hesse, H.; Hoefgen, R.: Transcription factors relevant to auxin signalling coordinate broad-spectrum metabolic shifts including sulphur metabolism. Journal of Experimental Botany 59 (10), pp. 2831 - 2846 (2008)
43.
Journal Article
Farre, E. M.; Fernie, A. R.; Willmitzer, L.: Analysis of subcellular metabolite levels of potato tubers (Solanum tuberosum) displaying alterations in cellular or extracellular sucrose metabolism. Metabolomics 4 (2), pp. 161 - 170 (2008)
44.
Journal Article
Fettke, J.; Nunes-Nesi, A.; Alpers, J.; Szkop, M.; Fernie, A. R.; Steup, M.: Alterations in Cytosolic Glucose-Phosphate Metabolism Affect Structural Features and Biochemical Properties of Starch-Related Heteroglycans. Plant Physiology 148 (3), pp. 1614 - 1629 (2008)
45.
Journal Article
Fey, H.; Piano, D.; Horn, R.; Fischer, D.; Schmidt, M.; Ruf, S.; Schroeder, W. P.; Bock, R.; Buechel, C.: Isolation of highly active photosystem II core complexes with a His-tagged Cyt b559 subunit from transplastomic tobacco plants. Biochimica Et Biophysica Acta-Bioenergetics 1777 (12), pp. 1501 - 1509 (2008)
46.
Journal Article
Fischer, U.; Kuhlmann, M.; Pecinka, A.; Schmidt, R.; Mette, M. F.: Local DNA features affect RNA-directed transcriptional gene silencing and DNA methylation. Plant Journal 53 (1), pp. 1 - 10 (2008)
47.
Journal Article
Gaude, N.; Nakamura, Y.; Scheible, W.-R.; Ohta, H.; Doermann, P.: Phospholipase C5 (NPC5) is involved in galactolipid accumulation during phosphate limitation in leaves of Arabidopsis. Plant Journal 56 (1), pp. 28 - 39 (2008)
48.
Journal Article
Gaupels, F.; Buhtz, A.; Knauer, T.; Deshmukh, S.; Waller, F.; van Bel, A. J. E.; Kogel, K. H.; Kehr, J.: Adaptation of aphid stylectomy for analyses of proteins and mRNAs in barley phloem sap. Journal of Experimental Botany 59 (12), pp. 3297 - 3306 (2008)
49.
Journal Article
Geisler, D. A.; Sampathkumar, A.; Mutwil, M.; Persson, S.: Laying down the bricks: logistic aspects of cell wall biosynthesis. Current Opinion in Plant Biology 11 (6), pp. 647 - 652 (2008)
50.
Journal Article
Giavalisco, P.; Hummel, J.; Lisec, J.; Inostroza, A. C.; Catchpole, G.; Willmitzer, L.: High-Resolution Direct Infusion-Based Mass Spectrometry in Combination with Whole C-13 Metabolome Isotope Labeling Allows Unambiguous Assignment of Chemical Sum Formulas. Analytical Chemistry 80 (24), pp. 9417 - 9425 (2008)
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