Max Planck Institute of Molecular Plant Physiology

Publications of the institute

Journal Article (164)

1.

Journal Article

Gutjahr, C.; Banba, M.; Croset, V.; An, K.; Miyao, A.; An, G.; Hirochika, H.; Imaizumi-Anraku, H.; Paszkowski, U.: Arbuscular Mycorrhiza-Specific Signaling in Rice Transcends the Common Symbiosis Signaling Pathway. The Plant Cell 20 (11), pp. 2989 - 3005 (2008)

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2.

Journal Article

Bernal, A. J.; Yoo, C.-M.; Mutwil, M.; Jensen, J. K.; Hou, G.; Blaukopf, C.; Sorensen, I.; Blancaflor, E. B.; Scheller, H. V.; Willats, W. G. T.: Functional Analysis of the Cellulose Synthase-Like Genes CSLD1, CSLD2, and CSLD4 in Tip-Growing Arabidopsis Cells. Plant Physiology 148 (3), pp. 1238 - 1253 (2008)

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3.

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Banba, M.; Gutjahr, C.; Miyao, A.; Hirochika, H.; Paszkowski, U.; Kouchi, H.; Imaizumi-Anraku, H.: Divergence of Evolutionary Ways Among Common sym Genes: CASTOR and CCaMK Show Functional Conservation Between Two Symbiosis Systems and Constitute the Root of a Common Signaling Pathway. Plant and Cell Physiology 49 (11), pp. 1659 - 1671 (2008)

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4.

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Makarevich, G.; Villar, C. B. R.; Erilova, A.; Köhler, C.: Mechanism of PHERES1 imprinting in Arabidopsis. Journal of Cell Science 121 (6), pp. 906 - 912 (2008)

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5.

Journal Article

Ainsworth, E. A.; Beier, C.; Calfapietra, C.; Ceulemans, R.; Durand-Tardif, M.; Farquhar, G. D.; Godbold, D. L.; Hendrey, G. R.; Hickler, T.; Kaduk, J. et al.; Karnosky, D. F.; Kimball, B. A.; Koerner, C.; Koornneef, M.; Lafarge, T.; Leakey, A. D. B.; Lewin, K. F.; Long, S. P.; Manderscheid, R.; Mcneil, D. L.; Mies, T. A.; Miglietta, F.; Morgan, J. A.; Nagy, J.; Norby, R. J.; Norton, R. M.; Percy, K. E.; Rogers, A.; Soussana, J. F.; Stitt, M.; Weigel, H. J.; White, J. W.: Next generation of elevated [CO2] experiments with crops: a critical investment for feeding the future world. Plant, Cell and Environment 31 (9), pp. 1317 - 1324 (2008)

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6.

Journal Article

Allen, A. E.; LaRoche, J.; Maheswari, U.; Lommer, M.; Schauer, N.; Lopez, P. J.; Finazzi, G.; Fernie, A. R.; Bowler, C.: Whole-cell response of the pennate diatom Phaeodactylum tricornutum to iron starvation. Proceedings of the National Academy of Sciences of the United States of America 105 (30), pp. 10438 - 10443 (2008)

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7.

Journal Article

Araujo, W. L.; Nunes-Nesi, A.; Trenkamp, S.; Bunik, V. I.; Fernie, A. R.: Inhibition of 2-Oxoglutarate Dehydrogenase in Potato Tuber Suggests the Enzyme Is Limiting for Respiration and Confirms Its Importance in Nitrogen Assimilation. Plant Physiology 148 (4), pp. 1782 - 1796 (2008)

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8.

Journal Article

Aronsson, H.; Schöttler, M. A.; Kelly, A. A.; Sundqvist, C.; Doermann, P.; Karim, S.; Jarvis, P.: Monogalactosyldiacylglycerol deficiency in Arabidopsis affects pigment composition in the prolamellar body and impairs thylakoid membrane energization and photoprotection in leaves. Plant Physiology 148 (1), pp. 580 - 592 (2008)

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9.

Journal Article

Arvidsson, S.; Kwasniewski, M.; Riano-Pachon, D. M.; Mueller-Roeber, B.: QuantPrime - a flexible tool for reliable high-throughput primer design for quantitative PCR. BMC Bioinformatics 9, p. 465 (2008)

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10.

Journal Article

Balazadeh, S.; Parlitz, S.; Mueller-Roeber, B.; Meyer, R. C.: Natural developmental variations in leaf and plant senescence in Arabidopsis thaliana. Plant Biology (Stuttgart, Germany) 10 Suppl 1, pp. 136 - 147 (2008)

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11.

Journal Article

Balazadeh, S.; Riano-Pachon, D. M.; Mueller-Roeber, B.: Transcription factors regulating leaf senescence in Arabidopsis thaliana. Plant Biology 10 Suppl 1, pp. 63 - 75 (2008)

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12.

Journal Article

Basler, G.; Nikoloski, Z.; Ebenhoeh, O.; Handorf, T.: Biosynthetic potentials from species-specific metabolic networks. Genome Informatics 20, pp. 135 - 148 (2008)

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13.

Journal Article

Benedito, V. A.; Torres-Jerez, I.; Murray, J. D.; Andriankaja, A.; Allen, S.; Kakar, K.; Wandrey, M.; Verdier, J.; Zuber, H.; Ott, T. et al.; Moreau, S.; Niebel, A.; Frickey, T.; Weiller, G.; He, J.; Dai, X. B.; Zhao, P. X.; Tang, Y. H.; Udvardi, M. K.: A gene expression atlas of the model legume Medicago truncatula. Plant Journal 55 (3), pp. 504 - 513 (2008)

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14.

Journal Article

Bermudez, L.; Urias, U.; Milstein, D.; Kamenetzky, L.; Asis, R.; Fernie, A. R.; van Sluys, M. A.; Carrari, F.; Rossi, M.: A candidate gene survey of quantitative trait loci affecting chemical composition in tomato fruit. Journal of Experimental Botany 59 (10), pp. 2875 - 2890 (2008)

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15.

Journal Article

Bieniawska, Z.; Espinoza, C.; Schlereth, A.; Sulpice, R.; Hincha, D. K.; Hannah, M. A.: Disruption of the Arabidopsis circadian clock is responsible for extensive variation in the cold-responsive transcriptome. Plant Physiology 147 (1), pp. 263 - 279 (2008)

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16.

Journal Article

Boch, A.; Trampczynska, A.; Simm, C.; Taudte, N.; Kraemer, U.; Clemens, S.: Loss of Zhf and the tightly regulated zinc-uptake system SpZrt1 in Schizosaccharomyces pombe reveals the delicacy of cellular zinc balance. Fems Yeast Research 8 (6), pp. 883 - 896 (2008)

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17.

Journal Article

Bock, R.; Timmis, J. N.: Reconstructing evolution: gene transfer from plastids to the nucleus. Bioessays 30 (6), pp. 556 - 566 (2008)

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18.

Journal Article

Boettcher, C.; Centeno, D.; Freitag, J.; Hoefgen, R.; Koehl, K. I.; Kopka, J.; Kroymann, J.; Matros, A.; Mock, H.-P.; Neumann, S. et al.; Pfalz, M.; von Roepenack-Lahaye, E.; Schauer, N.; Trenkamp, S.; Zurbriggen, M.; Fernie, A. R.: Teaching (and learning from) metabolomics: The 2006 PlantMetaNet ETNA Metabolomics Research School. Physiologia Plantarum 132 (2), pp. 136 - 149 (2008)

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19.

Journal Article

Bouyer, D.; Geier, F.; Kragler, F.; Schnittger, A.; Pesch, M.; Wester, K.; Balkunde, R.; Timmer, J.; Fleck, C.; Hulskamp, M.: Two-dimensional patterning by a trapping/depletion mechanism: the role of TTG1 and GL3 in Arabidopsis trichome formation. PLoS Biology 6 (6), p. e141 (2008)

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20.

Journal Article

Brandes, U.; Delling, D.; Gaertler, M.; Gorke, R.; Hoefer, M.; Nikoloski, Z.; Wagner, D.: On modularity clustering. IEEE Transactions on Knowledge and Data Engineering 20 (2), pp. 172 - 188 (2008)

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21.

Journal Article

Broholm, S. K.; Taehtiharju, S.; Laitinen, R. A.; Albert, V. A.; Teeri, T. H.; Elomaa, P.: A TCP domain transcription factor controls flower type specification along the radial axis of the Gerbera (Asteraceae) inflorescence. Proceedings of the National Academy of Sciences of the United States of America 105 (26), pp. 9117 - 9122 (2008)

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22.

Journal Article

Brotman, Y.; Briff, E.; Viterbo, A.; Chet, I.: Role of swollenin, an expansin-like protein from Trichoderma, in plant root colonization. Plant Physiology 147 (2), pp. 779 - 789 (2008)

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23.

Journal Article

Buhtz, A.; Springer, F.; Chappell, L.; Baulcombe, D. C.; Kehr, J.: Identification and characterization of small RNAs from the phloem of Brassica napus. Plant Journal 53 (5), pp. 739 - 749 (2008)

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24.

Journal Article

Cartieaux, F.; Contesto, C.; Gallou, A.; Desbrosses, G.; Kopka, J.; Taconnat, L.; Renou, J. P.; Touraine, B.: Simultaneous interaction of Arabidopsis thaliana with Bradyrhizobium sp strain ORS278 and Pseudomonas syriugae pv. tomato DC3000 leads to complex transcriptome changes. Molecular Plant-Microbe Interactions 21 (2), pp. 244 - 259 (2008)

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25.

Journal Article

Cavalier, D. M.; Lerouxel, O.; Neumetzler, L.; Yamauchi, K.; Reinecke, A.; Freshour, G.; Zabotina, O. A.; Hahn, M. G.; Burgert, I.; Pauly, M. et al.; Raikhel, N. V.; Keegstra, K.: Disrupting two Arabidopsis thaliana xylosyltransferase genes results in plants deficient in xyloglucan, a major primary cell wall component. Plant Cell 20 (6), pp. 1519 - 1537 (2008)

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26.

Journal Article

Centeno, D. C.; Oliver, S. N.; Nunes-Nesi, A.; Geigenberger, P.; Machado, D. N.; Loureiro, M. E.; Silva, M. A. P.; Fernie, A. R.: Metabolic regulation of pathways of carbohydrate oxidation in potato (Solanum tuberosum) tubers. Physiologia Plantarum 133 (4), pp. 744 - 754 (2008)

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27.

Journal Article

Chen, S.; Hajirezaei, M.-R.; Zanor, M. I.; Hornyik, C.; Debast, S.; Lacomme, C.; Fernie, A. R.; Sonnewald, U.; Bornke, F.: RNA interference-mediated repression of sucrose-phosphatase in transgenic potato tubers (Solanum tuberosum) strongly affects the hexose-to-sucrose ratio upon cold storage with only minor effects on total soluble carbohydrate accumulation. Plant, Cell and Environment 31 (1), pp. 165 - 176 (2008)

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28.

Journal Article

Chincinska, I. A.; Liesche, J.; Krugel, U.; Michalska, J.; Geigenberger, P.; Grimm, B.; Kuhn, C.: Sucrose transporter StSUT4 from potato affects flowering, tuberization, and shade avoidance response. Plant Physiology 146 (2), pp. 515 - 528 (2008)

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29.

Journal Article

Christensen, A.; Svensson, K.; Persson, S.; Jung, J.; Michalak, M.; Widell, S.; Sommarin, M.: Functional characterization of Arabidopsis calreticulin1a: A key alleviator of endoplasmic reticulum stress. Plant and Cell Physiology 49 (6), pp. 912 - 924 (2008)

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30.

Journal Article

Correa, L. G.; Riano-Pachon, D. M.; Schrago, C. G.; dos Santos, R. V.; Mueller-Roeber, B.; Vincentz, M.: The role of bZIP transcription factors in green plant evolution: adaptive features emerging from four founder genes. PLoS One 3 (8), p. e2944 (2008)

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31.

Journal Article

Crowhurst, R. N.; Gleave, A. P.; MacRae, E. A.; Ampomah-Dwamena, C.; Atkinson, R. G.; Beuning, L. L.; Bulley, S. M.; Chagne, D.; Marsh, K. B.; Matich, A. J. et al.; Montefiori, M.; Newcomb, R. D.; Schaffer, R. J.; Usadel, B.; Allan, A. C.; Boldingh, H. L.; Bowen, J. H.; Davy, M. W.; Eckloff, R.; Ferguson, A. R.; Fraser, L. G.; Gera, E.; Hellens, R. P.; Janssen, B. J.; Klages, K.; Lo, K. R.; MacDiarmid, R. M.; Nain, B.; McNeilage, M. A.; Rassam, M.; Richardson, A. C.; Rikkerink, E. H. A.; Ross, G. S.; Schroeder, R.; Snowden, K. C.; Souleyre, E. J. F.; Templeton, M. D.; Walton, E. F.; Wang, D.; Wang, M. Y.; Wang, Y. Y.; Wood, M.; Wu, R. M.; Yauk, Y. K.; Laing, W. A.: Analysis of expressed sequence tags from Actinidia: Applications of a cross species EST database for gene discovery in the areas of flavor, health, color and ripening. BMC Genomics 9, p. 351 (2008)

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32.

Journal Article

D'Antuono, A. L.; Ott, T.; Krusell, L.; Voroshilova, V.; Ugalde, R. A.; Udvardi, M. K.; Lepek, V. C.: Defects in rhizobial cyclic glucan and lipopolysaccharide synthesis alter legume gene expression during nodule development. Molecular Plant-Microbe Interactions 21 (1), pp. 50 - 60 (2008)

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33.

Journal Article

DaMatta, F. M.; Cunha, R. L.; Antunes, W. C.; Martins, S. C. V.; Araujo, W. L.; Fernie, A. R.; Moraes, G. A. B. K.: In field-grown coffee trees source-sink manipulation alters photosynthetic rates, independently of carbon metabolism, via alterations in stomatal function. New Phytologist 178 (2), pp. 348 - 357 (2008)

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34.

Journal Article

Doehlemann, G.; Wahl, R.; Horst, R. J.; Voll, L. M.; Usadel, B.; Poree, F.; Stitt, M.; Pons-Kuhnemann, J.; Sonnewald, U.; Kahmann, R. et al.; Kamper, J.: Reprogramming a maize plant: transcriptional and metabolic changes induced by the fungal biotroph Ustilago maydis. Plant Journal 56 (2), pp. 181 - 195 (2008)

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35.

Journal Article

Durek, P.; Walther, D.: The integrated analysis of metabolic and protein interaction networks reveals novel molecular organizing principles. BMC Systems Biology 2, p. 100 (2008)

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36.

Journal Article

Dworschak, S.; Grell, S.; Nikiforova, V. J.; Schaub, T.; Selbig, J.: Modeling biological networks by action languages via answer set programming. Constraints 13 (1-2), pp. 21 - 65 (2008)

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37.

Journal Article

Ebert, B.; Melle, C.; Lieckfeldt, E.; Zoeller, D.; von Eggeling, F.; Fisahn, J.: Protein profiling of single epidermal cell types from Arabidopsis thaliana using surface-enhanced laser desorption and ionization technology. Journal of Plant Physiology 165 (12), pp. 1227 - 1237 (2008)

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38.

Journal Article

Ehlert, B.; Hincha, D. K.: Chlorophyll fluorescence imaging accurately quantifies freezing damage and cold acclimation responses in Arabidopsis leaves. Plant Methods 4, p. 12 (2008)

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39.

Journal Article

Ehlert, B.; Schöttler, M. A.; Tischendorf, G.; Ludwig-Mueller, J.; Bock, R.: The paramutated SULFUREA locus of tomato is involved in auxin biosynthesis. Journal of Experimental Botany 59 (13), pp. 3635 - 3647 (2008)

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40.

Journal Article

Eisenhut, M.; Huege, J.; Schwarz, D.; Bauwe, H.; Kopka, J.; Hagemann, M.: Metabolome Phenotyping of Inorganic Carbon Limitation in Cells of the Wild Type and Photorespiratory Mutants of the Cyanobacterium Synechocystis sp Strain PCC 6803. Plant Physiology 148 (4), pp. 2109 - 2120 (2008)

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41.

Journal Article

Ensminger, I.; Schmidt, L.; Lloyd, J.: Soil temperature and intermittent frost modulate the rate of recovery of photosynthesis in Scots pine under simulated spring conditions. New Phytologist 177 (2), pp. 428 - 442 (2008)

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42.

Journal Article

Espinoza, C.; Bieniawska, Z.; Hincha, D. K.; Hannah, M. A.: Interactions between the circadian clock and cold-response in Arabidopsis. Plant Signaling & Behavior 3 (8), pp. 593 - 594 (2008)

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43.

Journal Article

Fait, A.; Fromm, H.; Walther, D.; Galili, G.; Fernie, A. R.: Highway or byway: the metabolic role of the GABA shunt in plants. Trends in Plant Science 13 (1), pp. 14 - 19 (2008)

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44.

Journal Article

Fait, A.; Hanhineva, K.; Beleggia, R.; Dai, N.; Rogachev, I.; Nikiforova, V. J.; Fernie, A. R.; Aharoni, A.: Reconfiguration of the achene and receptacle metabolic networks during strawberry fruit development. Plant Physiology 148 (2), pp. 730 - 750 (2008)

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45.

Journal Article

Falkenberg, B.; Witt, I.; Zanor, M. I.; Steinhauser, D.; Mueller-Roeber, B.; Hesse, H.; Hoefgen, R.: Transcription factors relevant to auxin signalling coordinate broad-spectrum metabolic shifts including sulphur metabolism. Journal of Experimental Botany 59 (10), pp. 2831 - 2846 (2008)

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46.

Journal Article

Farre, E. M.; Fernie, A. R.; Willmitzer, L.: Analysis of subcellular metabolite levels of potato tubers (Solanum tuberosum) displaying alterations in cellular or extracellular sucrose metabolism. Metabolomics 4 (2), pp. 161 - 170 (2008)

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47.

Journal Article

Fettke, J.; Nunes-Nesi, A.; Alpers, J.; Szkop, M.; Fernie, A. R.; Steup, M.: Alterations in Cytosolic Glucose-Phosphate Metabolism Affect Structural Features and Biochemical Properties of Starch-Related Heteroglycans. Plant Physiology 148 (3), pp. 1614 - 1629 (2008)

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48.

Journal Article

Fey, H.; Piano, D.; Horn, R.; Fischer, D.; Schmidt, M.; Ruf, S.; Schroeder, W. P.; Bock, R.; Buechel, C.: Isolation of highly active photosystem II core complexes with a His-tagged Cyt b559 subunit from transplastomic tobacco plants. Biochimica Et Biophysica Acta-Bioenergetics 1777 (12), pp. 1501 - 1509 (2008)

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49.

Journal Article

Fischer, U.; Kuhlmann, M.; Pecinka, A.; Schmidt, R.; Mette, M. F.: Local DNA features affect RNA-directed transcriptional gene silencing and DNA methylation. Plant Journal 53 (1), pp. 1 - 10 (2008)

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50.

Journal Article

Gaude, N.; Nakamura, Y.; Scheible, W.-R.; Ohta, H.; Doermann, P.: Phospholipase C5 (NPC5) is involved in galactolipid accumulation during phosphate limitation in leaves of Arabidopsis. Plant Journal 56 (1), pp. 28 - 39 (2008)

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