Max Planck Institute of Molecular Plant Physiology

Publications of the institute

Journal Article (144)

1.

Journal Article

Gutjahr, C.; Banba, M.; Croset, V.; An, K.; Miyao, A.; An, G.; Hirochika, H.; Imaizumi-Anraku, H.; Paszkowski, U.: Arbuscular Mycorrhiza-Specific Signaling in Rice Transcends the Common Symbiosis Signaling Pathway. The Plant Cell 20 (11), pp. 2989 - 3005 (2008)

MPG.PuRe

2.

Journal Article

Bernal, A. J.; Yoo, C.-M.; Mutwil, M.; Jensen, J. K.; Hou, G.; Blaukopf, C.; Sorensen, I.; Blancaflor, E. B.; Scheller, H. V.; Willats, W. G. T.: Functional Analysis of the Cellulose Synthase-Like Genes CSLD1, CSLD2, and CSLD4 in Tip-Growing Arabidopsis Cells. Plant Physiology 148 (3), pp. 1238 - 1253 (2008)

MPG.PuRe

3.

Journal Article

Banba, M.; Gutjahr, C.; Miyao, A.; Hirochika, H.; Paszkowski, U.; Kouchi, H.; Imaizumi-Anraku, H.: Divergence of Evolutionary Ways Among Common sym Genes: CASTOR and CCaMK Show Functional Conservation Between Two Symbiosis Systems and Constitute the Root of a Common Signaling Pathway. Plant and Cell Physiology 49 (11), pp. 1659 - 1671 (2008)

MPG.PuRe

4.

Journal Article

Makarevich, G.; Villar, C. B. R.; Erilova, A.; Köhler, C.: Mechanism of PHERES1 imprinting in Arabidopsis. Journal of Cell Science 121 (6), pp. 906 - 912 (2008)

MPG.PuRe

5.

Journal Article

Ainsworth, E. A.; Beier, C.; Calfapietra, C.; Ceulemans, R.; Durand-Tardif, M.; Farquhar, G. D.; Godbold, D. L.; Hendrey, G. R.; Hickler, T.; Kaduk, J. et al.; Karnosky, D. F.; Kimball, B. A.; Koerner, C.; Koornneef, M.; Lafarge, T.; Leakey, A. D. B.; Lewin, K. F.; Long, S. P.; Manderscheid, R.; Mcneil, D. L.; Mies, T. A.; Miglietta, F.; Morgan, J. A.; Nagy, J.; Norby, R. J.; Norton, R. M.; Percy, K. E.; Rogers, A.; Soussana, J. F.; Stitt, M.; Weigel, H. J.; White, J. W.: Next generation of elevated [CO2] experiments with crops: a critical investment for feeding the future world. Plant, Cell and Environment 31 (9), pp. 1317 - 1324 (2008)

MPG.PuRe

6.

Journal Article

Allen, A. E.; LaRoche, J.; Maheswari, U.; Lommer, M.; Schauer, N.; Lopez, P. J.; Finazzi, G.; Fernie, A. R.; Bowler, C.: Whole-cell response of the pennate diatom Phaeodactylum tricornutum to iron starvation. Proceedings of the National Academy of Sciences of the United States of America 105 (30), pp. 10438 - 10443 (2008)

MPG.PuRe

7.

Journal Article

Araujo, W. L.; Nunes-Nesi, A.; Trenkamp, S.; Bunik, V. I.; Fernie, A. R.: Inhibition of 2-Oxoglutarate Dehydrogenase in Potato Tuber Suggests the Enzyme Is Limiting for Respiration and Confirms Its Importance in Nitrogen Assimilation. Plant Physiology 148 (4), pp. 1782 - 1796 (2008)

MPG.PuRe

8.

Journal Article

Aronsson, H.; Schöttler, M. A.; Kelly, A. A.; Sundqvist, C.; Doermann, P.; Karim, S.; Jarvis, P.: Monogalactosyldiacylglycerol deficiency in Arabidopsis affects pigment composition in the prolamellar body and impairs thylakoid membrane energization and photoprotection in leaves. Plant Physiology 148 (1), pp. 580 - 592 (2008)

MPG.PuRe

9.

Journal Article

Arvidsson, S.; Kwasniewski, M.; Riano-Pachon, D. M.; Mueller-Roeber, B.: QuantPrime - a flexible tool for reliable high-throughput primer design for quantitative PCR. BMC Bioinformatics 9, p. 465 (2008)

MPG.PuRe

10.

Journal Article

Balazadeh, S.; Parlitz, S.; Mueller-Roeber, B.; Meyer, R. C.: Natural developmental variations in leaf and plant senescence in Arabidopsis thaliana. Plant Biology (Stuttgart, Germany) 10 Suppl 1, pp. 136 - 147 (2008)

MPG.PuRe

11.

Journal Article

Basler, G.; Nikoloski, Z.; Ebenhoeh, O.; Handorf, T.: Biosynthetic potentials from species-specific metabolic networks. Genome Informatics 20, pp. 135 - 148 (2008)

MPG.PuRe

12.

Journal Article

Benedito, V. A.; Torres-Jerez, I.; Murray, J. D.; Andriankaja, A.; Allen, S.; Kakar, K.; Wandrey, M.; Verdier, J.; Zuber, H.; Ott, T. et al.; Moreau, S.; Niebel, A.; Frickey, T.; Weiller, G.; He, J.; Dai, X. B.; Zhao, P. X.; Tang, Y. H.; Udvardi, M. K.: A gene expression atlas of the model legume Medicago truncatula. Plant Journal 55 (3), pp. 504 - 513 (2008)

MPG.PuRe

13.

Journal Article

Bermudez, L.; Urias, U.; Milstein, D.; Kamenetzky, L.; Asis, R.; Fernie, A. R.; van Sluys, M. A.; Carrari, F.; Rossi, M.: A candidate gene survey of quantitative trait loci affecting chemical composition in tomato fruit. Journal of Experimental Botany 59 (10), pp. 2875 - 2890 (2008)

MPG.PuRe

14.

Journal Article

Bieniawska, Z.; Espinoza, C.; Schlereth, A.; Sulpice, R.; Hincha, D. K.; Hannah, M. A.: Disruption of the Arabidopsis circadian clock is responsible for extensive variation in the cold-responsive transcriptome. Plant Physiology 147 (1), pp. 263 - 279 (2008)

MPG.PuRe

15.

Journal Article

Boch, A.; Trampczynska, A.; Simm, C.; Taudte, N.; Kraemer, U.; Clemens, S.: Loss of Zhf and the tightly regulated zinc-uptake system SpZrt1 in Schizosaccharomyces pombe reveals the delicacy of cellular zinc balance. Fems Yeast Research 8 (6), pp. 883 - 896 (2008)

MPG.PuRe

16.

Journal Article

Boettcher, C.; Centeno, D.; Freitag, J.; Hoefgen, R.; Koehl, K. I.; Kopka, J.; Kroymann, J.; Matros, A.; Mock, H.-P.; Neumann, S. et al.; Pfalz, M.; von Roepenack-Lahaye, E.; Schauer, N.; Trenkamp, S.; Zurbriggen, M.; Fernie, A. R.: Teaching (and learning from) metabolomics: The 2006 PlantMetaNet ETNA Metabolomics Research School. Physiologia Plantarum 132 (2), pp. 136 - 149 (2008)

MPG.PuRe

17.

Journal Article

Bouyer, D.; Geier, F.; Kragler, F.; Schnittger, A.; Pesch, M.; Wester, K.; Balkunde, R.; Timmer, J.; Fleck, C.; Hulskamp, M.: Two-dimensional patterning by a trapping/depletion mechanism: the role of TTG1 and GL3 in Arabidopsis trichome formation. PLoS Biology 6 (6), p. e141 (2008)

MPG.PuRe

18.

Journal Article

Brandes, U.; Delling, D.; Gaertler, M.; Gorke, R.; Hoefer, M.; Nikoloski, Z.; Wagner, D.: On modularity clustering. IEEE Transactions on Knowledge and Data Engineering 20 (2), pp. 172 - 188 (2008)

MPG.PuRe

19.

Journal Article

Broholm, S. K.; Taehtiharju, S.; Laitinen, R. A.; Albert, V. A.; Teeri, T. H.; Elomaa, P.: A TCP domain transcription factor controls flower type specification along the radial axis of the Gerbera (Asteraceae) inflorescence. Proceedings of the National Academy of Sciences of the United States of America 105 (26), pp. 9117 - 9122 (2008)

MPG.PuRe

20.

Journal Article

Brotman, Y.; Briff, E.; Viterbo, A.; Chet, I.: Role of swollenin, an expansin-like protein from Trichoderma, in plant root colonization. Plant Physiology 147 (2), pp. 779 - 789 (2008)

MPG.PuRe

21.

Journal Article

Buhtz, A.; Springer, F.; Chappell, L.; Baulcombe, D. C.; Kehr, J.: Identification and characterization of small RNAs from the phloem of Brassica napus. Plant Journal 53 (5), pp. 739 - 749 (2008)

MPG.PuRe

22.

Journal Article

Cartieaux, F.; Contesto, C.; Gallou, A.; Desbrosses, G.; Kopka, J.; Taconnat, L.; Renou, J. P.; Touraine, B.: Simultaneous interaction of Arabidopsis thaliana with Bradyrhizobium sp strain ORS278 and Pseudomonas syriugae pv. tomato DC3000 leads to complex transcriptome changes. Molecular Plant-Microbe Interactions 21 (2), pp. 244 - 259 (2008)

MPG.PuRe

23.

Journal Article

Chen, S.; Hajirezaei, M.-R.; Zanor, M. I.; Hornyik, C.; Debast, S.; Lacomme, C.; Fernie, A. R.; Sonnewald, U.; Bornke, F.: RNA interference-mediated repression of sucrose-phosphatase in transgenic potato tubers (Solanum tuberosum) strongly affects the hexose-to-sucrose ratio upon cold storage with only minor effects on total soluble carbohydrate accumulation. Plant, Cell and Environment 31 (1), pp. 165 - 176 (2008)

MPG.PuRe

24.

Journal Article

Chincinska, I. A.; Liesche, J.; Krugel, U.; Michalska, J.; Geigenberger, P.; Grimm, B.; Kuhn, C.: Sucrose transporter StSUT4 from potato affects flowering, tuberization, and shade avoidance response. Plant Physiology 146 (2), pp. 515 - 528 (2008)

MPG.PuRe

25.

Journal Article

Christensen, A.; Svensson, K.; Persson, S.; Jung, J.; Michalak, M.; Widell, S.; Sommarin, M.: Functional characterization of Arabidopsis calreticulin1a: A key alleviator of endoplasmic reticulum stress. Plant and Cell Physiology 49 (6), pp. 912 - 924 (2008)

MPG.PuRe

26.

Journal Article

Correa, L. G.; Riano-Pachon, D. M.; Schrago, C. G.; dos Santos, R. V.; Mueller-Roeber, B.; Vincentz, M.: The role of bZIP transcription factors in green plant evolution: adaptive features emerging from four founder genes. PLoS One 3 (8), p. e2944 (2008)

MPG.PuRe

27.

Journal Article

Crowhurst, R. N.; Gleave, A. P.; MacRae, E. A.; Ampomah-Dwamena, C.; Atkinson, R. G.; Beuning, L. L.; Bulley, S. M.; Chagne, D.; Marsh, K. B.; Matich, A. J. et al.; Montefiori, M.; Newcomb, R. D.; Schaffer, R. J.; Usadel, B.; Allan, A. C.; Boldingh, H. L.; Bowen, J. H.; Davy, M. W.; Eckloff, R.; Ferguson, A. R.; Fraser, L. G.; Gera, E.; Hellens, R. P.; Janssen, B. J.; Klages, K.; Lo, K. R.; MacDiarmid, R. M.; Nain, B.; McNeilage, M. A.; Rassam, M.; Richardson, A. C.; Rikkerink, E. H. A.; Ross, G. S.; Schroeder, R.; Snowden, K. C.; Souleyre, E. J. F.; Templeton, M. D.; Walton, E. F.; Wang, D.; Wang, M. Y.; Wang, Y. Y.; Wood, M.; Wu, R. M.; Yauk, Y. K.; Laing, W. A.: Analysis of expressed sequence tags from Actinidia: Applications of a cross species EST database for gene discovery in the areas of flavor, health, color and ripening. BMC Genomics 9, p. 351 (2008)

MPG.PuRe

28.

Journal Article

D'Antuono, A. L.; Ott, T.; Krusell, L.; Voroshilova, V.; Ugalde, R. A.; Udvardi, M. K.; Lepek, V. C.: Defects in rhizobial cyclic glucan and lipopolysaccharide synthesis alter legume gene expression during nodule development. Molecular Plant-Microbe Interactions 21 (1), pp. 50 - 60 (2008)

MPG.PuRe

29.

Journal Article

DaMatta, F. M.; Cunha, R. L.; Antunes, W. C.; Martins, S. C. V.; Araujo, W. L.; Fernie, A. R.; Moraes, G. A. B. K.: In field-grown coffee trees source-sink manipulation alters photosynthetic rates, independently of carbon metabolism, via alterations in stomatal function. New Phytologist 178 (2), pp. 348 - 357 (2008)

MPG.PuRe

30.

Journal Article

Doehlemann, G.; Wahl, R.; Horst, R. J.; Voll, L. M.; Usadel, B.; Poree, F.; Stitt, M.; Pons-Kuhnemann, J.; Sonnewald, U.; Kahmann, R. et al.; Kamper, J.: Reprogramming a maize plant: transcriptional and metabolic changes induced by the fungal biotroph Ustilago maydis. Plant Journal 56 (2), pp. 181 - 195 (2008)

MPG.PuRe

31.

Journal Article

Durek, P.; Walther, D.: The integrated analysis of metabolic and protein interaction networks reveals novel molecular organizing principles. BMC Systems Biology 2, p. 100 (2008)

MPG.PuRe

32.

Journal Article

Dworschak, S.; Grell, S.; Nikiforova, V. J.; Schaub, T.; Selbig, J.: Modeling biological networks by action languages via answer set programming. Constraints 13 (1-2), pp. 21 - 65 (2008)

MPG.PuRe

33.

Journal Article

Ebert, B.; Melle, C.; Lieckfeldt, E.; Zoeller, D.; von Eggeling, F.; Fisahn, J.: Protein profiling of single epidermal cell types from Arabidopsis thaliana using surface-enhanced laser desorption and ionization technology. Journal of Plant Physiology 165 (12), pp. 1227 - 1237 (2008)

MPG.PuRe

34.

Journal Article

Ehlert, B.; Hincha, D. K.: Chlorophyll fluorescence imaging accurately quantifies freezing damage and cold acclimation responses in Arabidopsis leaves. Plant Methods 4, p. 12 (2008)

MPG.PuRe

35.

Journal Article

Ehlert, B.; Schöttler, M. A.; Tischendorf, G.; Ludwig-Mueller, J.; Bock, R.: The paramutated SULFUREA locus of tomato is involved in auxin biosynthesis. Journal of Experimental Botany 59 (13), pp. 3635 - 3647 (2008)

MPG.PuRe

36.

Journal Article

Eisenhut, M.; Huege, J.; Schwarz, D.; Bauwe, H.; Kopka, J.; Hagemann, M.: Metabolome Phenotyping of Inorganic Carbon Limitation in Cells of the Wild Type and Photorespiratory Mutants of the Cyanobacterium Synechocystis sp Strain PCC 6803. Plant Physiology 148 (4), pp. 2109 - 2120 (2008)

MPG.PuRe

37.

Journal Article

Ensminger, I.; Schmidt, L.; Lloyd, J.: Soil temperature and intermittent frost modulate the rate of recovery of photosynthesis in Scots pine under simulated spring conditions. New Phytologist 177 (2), pp. 428 - 442 (2008)

MPG.PuRe

38.

Journal Article

Espinoza, C.; Bieniawska, Z.; Hincha, D. K.; Hannah, M. A.: Interactions between the circadian clock and cold-response in Arabidopsis. Plant Signaling & Behavior 3 (8), pp. 593 - 594 (2008)

MPG.PuRe

39.

Journal Article

Fait, A.; Hanhineva, K.; Beleggia, R.; Dai, N.; Rogachev, I.; Nikiforova, V. J.; Fernie, A. R.; Aharoni, A.: Reconfiguration of the achene and receptacle metabolic networks during strawberry fruit development. Plant Physiology 148 (2), pp. 730 - 750 (2008)

MPG.PuRe

40.

Journal Article

Falkenberg, B.; Witt, I.; Zanor, M. I.; Steinhauser, D.; Mueller-Roeber, B.; Hesse, H.; Hoefgen, R.: Transcription factors relevant to auxin signalling coordinate broad-spectrum metabolic shifts including sulphur metabolism. Journal of Experimental Botany 59 (10), pp. 2831 - 2846 (2008)

MPG.PuRe

41.

Journal Article

Farre, E. M.; Fernie, A. R.; Willmitzer, L.: Analysis of subcellular metabolite levels of potato tubers (Solanum tuberosum) displaying alterations in cellular or extracellular sucrose metabolism. Metabolomics 4 (2), pp. 161 - 170 (2008)

MPG.PuRe

42.

Journal Article

Fettke, J.; Nunes-Nesi, A.; Alpers, J.; Szkop, M.; Fernie, A. R.; Steup, M.: Alterations in Cytosolic Glucose-Phosphate Metabolism Affect Structural Features and Biochemical Properties of Starch-Related Heteroglycans. Plant Physiology 148 (3), pp. 1614 - 1629 (2008)

MPG.PuRe

43.

Journal Article

Fey, H.; Piano, D.; Horn, R.; Fischer, D.; Schmidt, M.; Ruf, S.; Schroeder, W. P.; Bock, R.; Buechel, C.: Isolation of highly active photosystem II core complexes with a His-tagged Cyt b559 subunit from transplastomic tobacco plants. Biochimica Et Biophysica Acta-Bioenergetics 1777 (12), pp. 1501 - 1509 (2008)

MPG.PuRe

44.

Journal Article

Fischer, U.; Kuhlmann, M.; Pecinka, A.; Schmidt, R.; Mette, M. F.: Local DNA features affect RNA-directed transcriptional gene silencing and DNA methylation. Plant Journal 53 (1), pp. 1 - 10 (2008)

MPG.PuRe

45.

Journal Article

Gaude, N.; Nakamura, Y.; Scheible, W.-R.; Ohta, H.; Doermann, P.: Phospholipase C5 (NPC5) is involved in galactolipid accumulation during phosphate limitation in leaves of Arabidopsis. Plant Journal 56 (1), pp. 28 - 39 (2008)

MPG.PuRe

46.

Journal Article

Gaupels, F.; Buhtz, A.; Knauer, T.; Deshmukh, S.; Waller, F.; van Bel, A. J. E.; Kogel, K. H.; Kehr, J.: Adaptation of aphid stylectomy for analyses of proteins and mRNAs in barley phloem sap. Journal of Experimental Botany 59 (12), pp. 3297 - 3306 (2008)

MPG.PuRe

47.

Journal Article

Giavalisco, P.; Hummel, J.; Lisec, J.; Inostroza, A. C.; Catchpole, G.; Willmitzer, L.: High-Resolution Direct Infusion-Based Mass Spectrometry in Combination with Whole C-13 Metabolome Isotope Labeling Allows Unambiguous Assignment of Chemical Sum Formulas. Analytical Chemistry 80 (24), pp. 9417 - 9425 (2008)

MPG.PuRe

48.

Journal Article

Golczyk, H.; Musial, K.; Rauwolf, U.; Meurer, J.; Herrmann, R. G.; Greiner, S.: Meiotic events in Oenothera - a non-standard pattern of chromosome behaviour. Genome 51 (11), pp. 952 - 958 (2008)

MPG.PuRe

49.

Journal Article

Greiner, S.; Wang, X.; Herrmann, R. G.; Rauwolf, U.; Mayer, K.; Haberer, G.; Meurer, J.: The complete nucleotide sequences of the 5 genetically distinct plastid genomes of Oenothera, subsection Oenothera: II. A microevolutionary view using bioinformatics and formal genetic data. Molecular Biology and Evolution 25 (9), pp. 2019 - 2030 (2008)

MPG.PuRe

50.

Journal Article

Greiner, S.; Wang, X.; Rauwolf, U.; Silber, M. V.; Mayer, K.; Meurer, J.; Haberer, G.; Herrmann, R. G.: The complete nucleotide sequences of the five genetically distinct plastid genomes of Oenothera, subsection Oenothera: I. Sequence evaluation and plastome evolution. Nucleic Acids Research 36 (7), pp. 2366 - 2378 (2008)

MPG.PuRe