Publications of the MPI

1.

Journal Article

Hennig, L.; Gruissem, W.; Grossniklaus, U.; Köhler, C.: Transcriptional Programs of Early Reproductive Stages in Arabidopsis. Plant Physiology 135 (3), pp. 1765 - 1775 (2004)

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2.

Journal Article

Collinge, M. A.; Spillane, C.; Köhler, C.; Gheyselinck, J.; Grossniklaus, U.: Genetic Interaction of an Origin Recognition Complex Subunit and the Polycomb Group Gene MEDEA during Seed Development. Plant Cell 16 (4), pp. 1035 - 1046 (2004)

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3.

Journal Article

Page, D. R.; Köhler, C.; da Costa-Nunes; A., J.; Baroux, C.; Moore, J. M.; Grossniklaus, U.: Intrachromosomal excision of a hybrid Ds element induces large genomic deletions in Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America 101 (9), pp. 2969 - 2974 (2004)

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4.

Journal Article

Becher, M.; Talke, I. N.; Krall, L.; Kraemer, U.: Cross-species microarray transcript profiling reveals high constitutive expression of metal homeostasis genes in shoots of the zinc hyperaccumulator Arabidopsis halleri. Plant Journal 37 (2), pp. 251 - 268 (2004)

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5.

Journal Article

Becker, D.; Geiger, D.; Dunkel, M.; Roller, A.; Bertl, A.; Latz, A.; Carpaneto, A.; Dietrich, P.; Roelfsema, M. R. G.; Voelker, C. et al.; Schmidt, D.; Mueller-Roeber, B.; Czempinski, K.; Hedrich, R.: AtTPK4, an Arabidopsis tandem-pore K+ channel, poised to control the pollen membrane voltage in a pH- and Ca2+-dependent manner. Proceedings of the National Academy of Sciences of the United States of America 101 (44), pp. 15621 - 15626 (2004)

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6.

Journal Article

Bender-Machado, L.; Bauerlein, M.; Carrari, F.; Schauer, N.; Lytovchenko, A.; Gibon, Y.; Kelly, A. A.; Loureiro, M. E.; Muller-Rober, B.; Willmitzer, L. et al.; Fernie, A. R.: Expression of a yeast acetyl CoA hydrolase in the mitochondrion of tobacco plants inhibits growth and restricts photosynthesis. Plant Molecular Biology 55 (5), pp. 645 - 662 (2004)

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7.

Journal Article

Bino, R. J.; Hall, R. D.; Fiehn, O.; Kopka, J.; Saito, K.; Draper, J.; Nikolau, B. J.; Mendes, P.; Roessner-Tunali, U.; Beale, M. H. et al.; Trethewey, R. N.; Lange, B. M.; Wurtele, E. S.; Sumner, L. W.: Potential of metabolomics as a functional genomics tool. Trends in Plant Science 9 (9), pp. 418 - 425 (2004)

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8.

Journal Article

Boivin, K.; Acarkan, A.; Mbulu, R. S.; Clarenz, O.; Schmidt, R.: The Arabidopsis genome sequence as a tool for genome analysis in Brassicaceae. A comparison of the Arabidopsis and Capsella rubella genomes. Plant Physiology 135 (2), pp. 735 - 744 (2004)

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9.

Journal Article

Buhtz, A.; Kolasa, A.; Arlt, K.; Walz, C.; Kehr, J.: Xylem sap protein composition is conserved among different plant species. Planta 219 (4), pp. 610 - 618 (2004)

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10.

Journal Article

Castleden, C. K.; Aoki, N.; Gillespie, V. J.; MacRae, E. A.; Quick, W. P.; Buchner, P.; Foyer, C. H.; Furbank, R. T.; Lunn, J. E.: Evolution and function of the sucrose-phosphate synthase gene families in wheat and other grasses. Plant Physiology 135 (3), pp. 1753 - 1764 (2004)

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11.

Journal Article

Clark, G. T.; Zuther, E.; Outred, H. A.; McManus, M. T.; Heyer, A. G.: Tissue-specific changes in remobilisation of fructan in the xerophytic tussock species Festuca novae-zelandiae in response to a water deficit. Functional Plant Biology 31 (4), pp. 377 - 389 (2004)

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12.

Journal Article

Colditz, F.; Nyamsuren, O.; Niehaus, K.; Eubel, H.; Braun, H. P.; Krajinski, F.: Proteomic approach: Identification of Medicago truncatula proteins induced in roots after infection with the pathogenic oomycete Aphanomyces euteiches. Plant Molecular Biology 55 (1), pp. 109 - 120 (2004)

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13.

Journal Article

Coll-Garcia, D.; Mazuch, J.; Altmann, T.; Muessig, C.: EXORDIUM regulates brassinosteroid-responsive genes. FEBS Letters 563 (1-3), pp. 82 - 86 (2004)

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14.

Journal Article

Cook, D.; Fowler, S.; Fiehn, O.; Thomashow, M. F.: A prominent role for the CBF cold response pathway in configuring the low-temperature metabolome of Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America 101 (42), pp. 15243 - 15248 (2004)

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15.

Journal Article

Czechowski, T.; Bari, R. P.; Stitt, M.; Scheible, W.-R.; Udvardi, M. K.: Real-time RT-PCR profiling of over 1400 Arabidopsis transcription factors: unprecedented sensitivity reveals novel root- and shoot-specific genes. Plant Journal 38 (2), pp. 366 - 379 (2004)

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16.

Journal Article

D'Apuzzo, E.; Rogato, A.; Simon-Rosin, U.; El Alaoui, H.; Barbulova, A.; Betti, M.; Dimou, M.; Katinakis, P.; Marquez, A.; Marini, A. et al.; Udvardi, M. K.; Chiurazzi, M.: Characterization of three functional high-affinity ammonium transporters in Lotus japonicus with differential transcriptional regulation spatial expression. Plant Physiology 134 (4), pp. 1763 - 1774 (2004)

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17.

Journal Article

Daub, C. O.; Steuer, R.; Selbig, J.; Kloska, S.: Estimating mutual information using B-spline functions - an improved similarity measure for analysing gene expression data. BMC Bioinformatics 5, p. 118 (2004)

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18.

Journal Article

de Souza, A.; Takita, M.; Coletta, H.; Caldana, C.; Yanai, G.; Muto, N.; de Oliveira, R.; Nunes, L.; Machado, M.: Gene expression profile of the plant pathogen Xylella fastidiosa during biofilm formation in vitro. FEMS Microbiology Letters 237 (2), pp. 341 - 353 (2004)

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19.

Journal Article

Debnam, P. M.; Fernie, A. R.; Leisse, A.; Golding, A.; Bowsher, C. G.; Grimshaw, C.; Knight, J. S.; Emes, M. J.: Altered activity of the P2 isoform of plastidic glucose 6-phosphate dehydrogenase in tobacco (Nicotiana tabacum cv. Samsun) causes changes in carbohydrate metabolism and response to oxidative stress in leaves. Plant Journal 38 (1), pp. 49 - 59 (2004)

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20.

Journal Article

Desbrosses, G.; Kopka, C.; Ott, T.; Udvardi, M. K.: Lotus japonicus LjKUP is induced late during nodule development and encodes a potassium transporter of the plasma membrane. Molecular Plant-Microbe Interactions 17 (7), pp. 789 - 797 (2004)

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21.

Journal Article

Drager, D. B.; Desbrosses-Fonrouge, A.-G.; Krach, C.; Chardonnens, A. N.; Meyer, R. C.; Saumitou-Laprade, P.; Kraemer, U.: Two genes encoding Arabidopsis halleri MTP1 metal transport proteins co-segregate with zinc tolerance and account for high MTP1 transcript levels. Plant Journal 39 (3), pp. 425 - 439 (2004)

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22.

Journal Article

Dreyer, I.; Poree, F.; Schneider, A.; Mittelstadt, J.; Bertl, A.; Sentenac, H.; Thibaud, J. B.; Mueller-Roeber, B.: Assembly of plant Shaker-like K-out channels requires two distinct sites of the channel alpha-subunit. Biophysical Journal 87 (2), pp. 858 - 872 (2004)

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23.

Journal Article

Ebenhoeh, O.; Handorf, T.; Heinrich, R.: Structural Analysis of Expanding Metabolic Networks. Genome Informatics 15 (1), pp. 35 - 45 (2004)

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24.

Journal Article

Fettke, J.; Eckermann, N.; Poeste, S.; Pauly, M.; Steup, M.: The glycan substrate of the cytosolic (Pho 2) phosphorylase isozyme from Pisum sativum L.: identification, linkage analysis and subcellular localization. Plant Journal 39 (6), pp. 933 - 946 (2004)

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25.

Journal Article

Fiebig, A.; Stegemann, S.; Bock, R.: Rapid evolution of RNA editing sites in a small non-essential plastid gene. Nucleic Acids Research 32 (12), pp. 3615 - 3622 (2004)

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26.

Journal Article

Fisahn, J.; Herde, O.; Willmitzer, L.; Pena-Cortes, H.: Analysis of the transient increase in cytosolic Ca2+ during the action potential of higher plants with high temporal resolution: Requirement of Ca2+ transients for induction of jasmonic acid biosynthesis and PINII gene expression. Plant and Cell Physiology 45 (4), pp. 456 - 459 (2004)

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27.

Journal Article

Flemetakis, E.; Efrose, R. C.; Desbrosses, G.; Dimou, M.; Delis, C.; Aivalakis, G.; Udvardi, M. K.; Katinakis, P.: Induction and spatial organization of polyamine biosynthesis during nodule development in Lotus japonicus. Molecular Plant-Microbe Interactions 17 (12), pp. 1283 - 1293 (2004)

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28.

Journal Article

Fridman, E.; Carrari, F.; Liu, Y. S.; Fernie, A. R.; Zamir, D.: Zooming in on a quantitative trait for tomato yield using interspecific introgressions. Science 305 (5691), pp. 1786 - 1789 (2004)

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29.

Journal Article

Gaude, N.; Tippmann, H.; Flemetakis, E.; Katinakis, P.; Udvardi, M. K.; Doermann, P.: The galactolipid digalactosyldiacylglycerol accumulates in the peribacteroid membrane of nitrogen-fixing nodules of soybean and Lotus. Journal of Biological Chemistry 279 (33), pp. 34624 - 34630 (2004)

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30.

Journal Article

Geigenberger, P.; Regierer, B.; Lytovchenko, A.; Leisse, A.; Schauer, N.; Springer, F.; Kossmann, J.; Fernie, A. R.: Heterologous expression of a ketohexokinase in potato plants leads to inhibited rates of photosynthesis, severe growth retardation and abnormal leaf development. Planta 218 (4), pp. 569 - 578 (2004)

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31.

Journal Article

Gibon, Y.; Blaesing, O. E.; Hannemann, J.; Carillo, P.; Hoehne, M.; Hendriks, J. H. M.; Palacios, N.; Cross, J.; Selbig, J.; Stitt, M.: A robot-based platform to measure multiple enzyme activities in Arabidopsis using a set of cycling assays: Comparison of changes of enzyme activities and transcript levels during diurnal cycles and in prolonged darkness. Plant Cell 16 (12), pp. 3304 - 3325 (2004)

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32.

Journal Article

Gibon, Y.; Blaesing, O. E.; Palacios-Rojas, N.; Pankovic, D.; Hendriks, J. H. M.; Fisahn, J.; Hoehne, M.; Guenther, M.; Stitt, M.: Adjustment of diurnal starch turnover to short days: depletion of sugar during the night leads to a temporary inhibition of carbohydrate utilization, accumulation of sugars and post-translational activation of ADP-glucose pyrophosphorylase in the following light period. Plant Journal 39 (6), pp. 847 - 862 (2004)

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33.

Journal Article

Gomez-Merino, F. C.; Brearley, C. A.; Ornatowska, M.; Abdel-Haliem, M. E. F.; Zanor, M. I.; Mueller-Roeber, B.: AtDGK2, a novel diacylglycerol kinase from Arabidopsis thaliana, phosphorylates 1-stearoyl-2-arachidonoyl-sn-glycerol and 1,2-dioleoyl-sn-glycerol and exhibits cold-inducible gene expression. Journal of Biological Chemistry 279 (9), pp. 8230 - 8241 (2004)

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34.

Journal Article

Grunwald, U.; Nyamsuren, O.; Tarnasloukht, M.; Lapopin, L.; Becker, A.; Mann, P.; Gianinazzi-Pearson, V.; Krajinski, F.; Franken, P.: Identification of mycorrhiza-regulated genes with arbuscule development-related expression profile. Plant Molecular Biology 55 (4), pp. 553 - 566 (2004)

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35.

Journal Article

Heyer, A. G.; Raap, M.; Schroeer, B.; Marty, B.; Willmitzer, L.: Cell wall invertase expression at the apical meristem alters floral, architectural, and reproductive traits in Arabidopsis thaliana. Plant Journal 39 (2), pp. 161 - 169 (2004)

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36.

Journal Article

Hilson, P.; Allemeersch, J.; Altmann, T.; Aubourg, S.; Avon, A.; Beynon, J.; Bhalerao, R. P.; Bitton, F.; Caboche, M.; Cannoot, B. et al.; Chardakov, V.; Cognet-Holliger, C.; Colot, V.; Crowe, M.; Darimont, C.; Durinck, S.; Eickhoff, H.; de Longevialle, A. F.; Farmer, E. E.; Grant, M.; Kuiper, M. T. R.; Lehrach, H.; Leon, C.; Leyva, A.; Lundeberg, J.; Lurin, C.; Moreau, Y.; Nietfeld, W.; Paz-Ares, J.; Reymond, P.; Rouze, P.; Sandberg, G.; Segura, M. D.; Serizet, C.; Tabrett, A.; Taconnat, L.; Thareau, V.; van Hummelen, P.; Vercruysse, S.; Vuylsteke, M.; Weingartner, M.; Weisbeek, P. J.; Wirta, V.; Wittink, F. R. A.; Zabeau, M.; Small, I.: Versatile gene-specific sequence tags for Arabidopsis functional genomics: Trancript profiling and reverse genetics applications. Genome Research 14 (10B), pp. 2176 - 2189 (2004)

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37.

Journal Article

Hincha, D. K.; Hagemann, M.: Stabilization of model membranes during drying by compatible solutes involved in the stress tolerance of plants and microorganisms. Biochemical Journal 383 (Pt 2), pp. 277 - 283 (2004)

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38.

Journal Article

Jenkins, H.; Hardy, N.; Beckmann, M.; Draper, J.; Smith, A. R.; Taylor, J.; Fiehn, O.; Goodacre, R.; Bino, R. J.; Hall, R. et al.; Kopka, J.; Lane, G. A.; Lange, B. M.; Liu, J. R.; Mendes, P.; Nikolau, B. J.; Oliver, S. G.; Paton, N. W.; Rhee, S.; Roessner-Tunali, U.; Saito, K.; Smedsgaard, J.; Sumner, L. W.; Wang, T.; Walsh, S.; Wurtele, E. S.; Kell, D. B.: A proposed framework for the description of plant metabolomics experiments and their results. Nature Biotechnology 22 (12), pp. 1601 - 1606 (2004)

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39.

Journal Article

Jin, P.; Walther, D.; Zhang, J.; Rowe-Teeter, C.; Fu, G. K.: Serine 171, a conserved residue in the gamma-aminobutyric acid type A (GABA(A)) receptor gamma 2 subunit, mediates subunit interaction and cell surface localization. Journal of Biological Chemistry 279 (14), pp. 14179 - 14183 (2004)

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40.

Journal Article

Junker, B. H.; Wuttke, R.; Tiessen, A.; Geigenberger, P.; Sonnewald, U.; Willmitzer, L.; Fernie, A. R.: Temporally regulated expression of a yeast invertase in potato tubers allows dissection of the complex metabolic phenotype obtained following its constitutive expression. Plant Molecular Biology 56 (1), pp. 91 - 110 (2004)

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41.

Journal Article

Kaplan, F.; Kopka, J.; Haskell, D. W.; Zhao, W.; Schiller, K. C.; Gatzke, N.; Sung, D. Y.; Guy, C. L.: Exploring the temperature-stress metabolome of Arabidopsis. Plant Physiology 136 (4), pp. 4159 - 4168 (2004)

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42.

Journal Article

Kersten, B.; Feilner, T.; Angenendt, P.; Giavalisco, P.; Brenner, W.; Buerkle, L.: Proteomic Approaches in Plant Biology. Current Proteomics 1 (2), pp. 131 - 144 (2004)

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43.

Journal Article

Kirchhoff, H.; Schöttler, M. A.; Maurer, J.; Weis, E.: Plastocyanin redox kinetics in spinach chloroplasts: evidence for disequilibrium in the high potential chain. Biochimica et Biophysica Acta-Bioenergetics 1659 (1), pp. 63 - 72 (2004)

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44.

Journal Article

Klaus, D.; Ohlrogge, J. B.; Neuhaus, H. E.; Doermann, P.: Increased fatty acid production in potato by engineering of acetyl-CoA carboxylase. Planta 219 (3), pp. 389 - 396 (2004)

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45.

Journal Article

Klotke, J.; Kopka, J.; Gatzke, N.; Heyer, A. G.: Impact of soluble sugar concentrations on the acquisition of freezing tolerance in accessions of Arabidopsis thaliana with contrasting cold adaptation - evidence for a role of raffinose in cold acclimation. Plant Cell and Environment 27 (11), pp. 1395 - 1404 (2004)

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46.

Journal Article

Koehler, B.; Mueller-Roeber, B.: Remote control - cell and organ communication within plants. New Phytologist 161 (2), pp. 321 - 324 (2004)

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47.

Journal Article

Korpelainen, H.; Laitinen, R.; Pohjamo, M.: Lack of intraspecific variation in cpDNA in Trichocolea tomentella. Journal of Bryology 26, pp. 221 - 223 (2004)

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48.

Journal Article

Kuester, H.; Hohnjec, N.; Krajinski, F.; El Yahyaoui, F.; Manthey, K.; Gouzy, J.; Dondrup, M.; Meyer, F.; Kalinowski, J.; Brechenmacher, L. et al.; van Tuinen, D.; Gianinazzi-Pearson, V.; Puehler, A.; Gamas, P.; Becker, A.: Construction and validation of cDNA-based Mt6k-RIT macro- and microarrays to explore root endosymbioses in the model legume Medicago truncatula. Journal of Biotechnology 108 (2), pp. 95 - 113 (2004)

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49.

Journal Article

Lubeck, M.; Bulat, S.; Alekhina, I.; Lieckfeldt, E.: Delineation of species within the Trichoderma viridelatroviridel koningii complex by UP-PCR cross-blot hybridization. Fems Microbiology Letters 237 (2), pp. 255 - 260 (2004)

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50.

Journal Article

Luedemann, A.; Weicht, D.; Selbig, J.; Kopka, J.: PaVESy: Pathway visualization and editing system. Bioinformatics 20 (16), pp. 2841 - 2844 (2004)

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Publications of the institute

Journal Article (90)