Publications of the institute

Journal Article (162)

1.
Journal Article
Hussain, J.; Chen, J.; Locato, V.; Sabetta, W.; Behera, S.; Cimini, S.; Griggio, F.; Martínez-Jaime, S.; Graf, A.; Bouneb, M. et al.; Pachaiappan, R.; Fincato, P.; Blanco, E.; Costa, A.; De Gara, L.; Bellin, D.; Concetto de Pinto, M.; Vandelle, E.: Constitutive cyclic GMP accumulation in Arabidopsis thaliana compromises systemic acquired resistance induced by an avirulent pathogen by modulating local signals. Scientific Reports 6, 36423 (2016)
2.
Journal Article
Sedaghatmehr, M.; Mueller-Roeber, B.; Balazadeh, S.: The plastid metalloprotease FtsH6 and small heat shock protein HSP21 jointly regulate thermomemory in Arabidopsis. Nature Communications 7, 12439 (2016)
3.
Journal Article
Wen, W.; Brotman, Y.; Willmitzer, L.; Yan, J.; Fernie, A. R.: Broadening Our Portfolio in the Genetic Improvement of Maize Chemical Composition. Trends in Genetics 32 (8), pp. 459 - 469 (2016)
4.
Journal Article
Bar-Even, A.: Formate Assimilation: The Metabolic Architecture of Natural and Synthetic Pathways. Biochemistry 55 (28), pp. 3851 - 3863 (2016)
5.
Journal Article
Li, Z.; Fernie, A. R.; Persson, S.: Transition of primary to secondary cell wall synthesis. Science Bulletin 61 (11), pp. 838 - 846 (2016)
6.
Journal Article
Mackinder, L. C. M.; Meyer, M. T.; Mettler, T.; Chen, V. K.; Mitchell, M. C.; Caspari, O.; Rosenzweig, E. S. F.; Pallesen, L.; Reeves, G.; Itakura, A. et al.; Roth, R.; Sommer, F.; Geimer, S.; Mühlhaus, T.; Schroda, M.; Goodenough, U.; Stitt, M.; Griffiths, H.; Jonikas, M. C.: A repeat protein links Rubisco to form the eukaryotic carbon-concentrating organelle. Proceedings of the National Academy of Sciences of the United States of America 113 (21), pp. 5958 - 5963 (2016)
7.
Journal Article
Bunik, V.; Mkrtchyan, G.; Grabarska, A.; Oppermann, H.; Daloso, D. M.; Araujo, W. L.; Juszczak, M.; Rzeski, W.; Bettendorff, L.; Fernie, A. R. et al.; Meixensberger, J.; Stepulak, A.; Gaunitz, F.: Inhibition of mitochondrial 2-oxoglutarate dehydrogenase impairs viability of cancer cells in a cell-specific metabolism-dependent manner. Oncotarget 7 (18), pp. 26400 - 26421 (2016)
8.
Journal Article
Zelcbuch, L.; Lindner, S. N.; Zegman, Y.; Slutskin, I. V.; Antonovsky, N.; Gleizer, S.; Milo, R.; Bar-Even, A.: Pyruvate Formate-Lyase Enables Efficient Growth of Escherichia coli on Acetate and Formate. Biochemistry 55 (17), pp. 2423 - 2426 (2016)
9.
Journal Article
Betti, M.; Bauwe, H.; Busch, F. A.; Fernie, A. R.; Keech, O.; Levey, M.; Ort, D. R.; Parry, M. A. J.; Sage, R.; Timm, S. et al.; Walker, B.; Weber, A. P. M.: Manipulating photorespiration to increase plant productivity: recent advances and perspectives for crop improvement. Journal of Experimental Botany 67 (10-SI), pp. 2977 - 2988 (2016)
10.
Journal Article
Gago, J.; Daloso, D. M.; Figueroa, C. M.; Flexas, J.; Fernie, A. R.; Nikoloski, Z.: Relationships of Leaf Net Photosynthesis, Stomatal Conductance, and Mesophyll Conductance to Primary Metabolism: A Multispecies Meta-Analysis Approach. Plant Physiology 171 (1), pp. 265 - 279 (2016)
11.
Journal Article
Kabelitz, T.; Brzezinka, K.; Friedrich, T.; Gorka, M.; Graf, A.; Kappel, C.; Baeurle, I.: A JUMONJI Protein with E3 Ligase and Histone H3 Binding Activities Affects Transposon Silencing in Arabidopsis. Plant Physiology 171 (1), pp. 344 - 358 (2016)
12.
Journal Article
Korkuc, P.; Walther, D.: Spatial proximity statistics suggest a regulatory role of protein phosphorylation on compound binding. Proteins-Structure Function and Bioinformatics 84 (5), pp. 565 - 579 (2016)
13.
Journal Article
Kudla, J.; Bock, R.: Lighting the Way to Protein-Protein Interactions: Recommendations on Best Practices for Bimolecular Fluorescence Complementation Analyses. Plant Cell 28 (5), pp. 1002 - 1008 (2016)
14.
Journal Article
Timm, S.; Florian, A.; Fernie, A. R.; Bauwe, H.: The regulatory interplay between photorespiration and photosynthesis. Journal of Experimental Botany 67 (10-SI), pp. 2923 - 2929 (2016)
15.
Journal Article
Zhu, X.-G.; Lynch, J. P.; LeBauer, D. S.; Millar, A. J.; Stitt, M.; Long, S. P.: Plants in silico: why, why now and what?an integrative platform for plant systems biology research. Plant, Cell and Environment 39 (5), pp. 1049 - 1057 (2016)
16.
Journal Article
Sviben, S.; Gal, A.; Hood, M. A.; Bertinetti, L.; Politi, Y.; Bennet, M.; Krishnamoorthy, P.; Schertel, A.; Wirth, R.; Sorrentino, A. et al.; Pereiro, E.; Faivre, D.; Scheffel, A.: A vacuole-like compartment concentrates a disordered calcium phase in a key coccolithophorid alga. Nature Communications, 11228 (2016)
17.
Journal Article
Addadi, L.; Gal, A.; Faivre, D.; Scheffel, A.; Weiner, S.: Control of Biogenic Nanocrystal Formation in Biomineralization. Israel Journal of Chemistry 56 (4 SI), pp. 227 - 241 (2016)
18.
Journal Article
Cookson, S. J.; Yadav, U. P.; Klie, S.; Morcuende, R.; Usadel, B.; Lunn, J. E.; Stitt, M.: Temporal kinetics of the transcriptional response to carbon depletion and sucrose readdition in Arabidopsis seedlings. Plant, Cell and Environment 39 (4), pp. 768 - 786 (2016)
19.
Journal Article
Gnanasekaran, T.; Karcher, D.; Nielsen, A. Z.; Martens, H. J.; Ruf, S.; Kroop, X.; Olsen, C. E.; Motawie, M. S.; Pribil, M.; Moller, B. L. et al.; Bock, R.; Jensen, P. E.: Transfer of the cytochrome P450-dependent dhurrin pathway from Sorghum bicolor into Nicotiana tabacum chloroplasts for light-driven synthesis. Journal of Experimental Botany 67 (8), pp. 2495 - 2506 (2016)
20.
Journal Article
Keunen, E.; Florez-Sarasa, I. D.; Obata, T.; Jozefczak, M.; Remans, T.; Vangronsveld, J.; Fernie, A. R.; Cuypers, A.: Metabolic responses of Arabidopsis thaliana roots and leaves to sublethal cadmium exposure are differentially influenced by ALTERNATIVE OXIDASE1a. Environmental and Experimental Botany 124, pp. 64 - 78 (2016)
21.
Journal Article
Lauxmann, M.; Annunziata, M. G.; Brunoud, G.; Wahl, V.; Koczut, A.; Burgos, A.; Olas, J. J.; Maximova, E.; Abel, C.; Schlereth, A. et al.; Soja, A. M.; Bläsing, O. E.; Lunn, J. E.; Vernoux, T.; Stitt, M.: Reproductive failure in Arabidopsis thaliana under transient carbohydrate limitation: flowers and very young siliques are jettisoned and the meristem is maintained to allow successful resumption of reproductive growth. Plant, Cell and Environment 39 (4), pp. 745 - 767 (2016)
22.
Journal Article
Massouh, A.; Schubert, J.; Yaneva-Roder, L.; Ulbricht-Jones, E. S.; Zupok, A.; Johnson, M. T. J.; Wright, S. I.; Pellizer, T.; Sobanski, J.; Bock, R. et al.; Greiner, S.: Spontaneous Chloroplast Mutants Mostly Occur by Replication Slippage and Show a Biased Pattern in the Plastome of Oenothera. The Plant Cell 28 (4), pp. 911 - 929 (2016)
23.
Journal Article
Proost, S.; Mutwil, M.: Tools of the trade: studying molecular networks in plants. Current Opinion in Plant Biology 30, pp. 143 - 150 (2016)
24.
Journal Article
Rajasundaram, D.; Selbig, J.: More effort - more results: recent advances in integrative 'omics' data analysis. Current Opinion in Plant Biology 30, pp. 57 - 61 (2016)
25.
Journal Article
Staroske, N.; Conrad, U.; Kumlehn, J.; Hensel, G.; Radchuk, R.; Erban, A.; Kopka, J.; Weschke, W.; Weber, H.: Increasing abscisic acid levels by immunomodulation in barley grains induces precocious maturation without changing grain composition. Journal of Experimental Botany 67 (9), pp. 2675 - 2687 (2016)
26.
Journal Article
Walther, D.; Kragler, F.: Mobile RNAs convey the message. Nature Plants 2 (4), 16040 (2016)
27.
Journal Article
Juszczak, I.; Cvetkovic, J.; Zuther, E.; Hincha, D. K.; Baier, M.: Natural Variation of Cold Deacclimation Correlates with Variation of Cold-Acclimation of the Plastid Antioxidant System in Arabidopsis thaliana Accessions. Frontiers in Plant Science 7, 305 (2016)
28.
Journal Article
Kotzsch, A.; Pawolski, D.; Milentyev, A.; Shevchenko, A.; Scheffel, A.; Poulsen, N.; Shevchenko, A.; Kroeger, N.: Biochemical Composition and Assembly of Biosilica-associated Insoluble Organic Matrices from the Diatom Thalassiosira pseudonana. The Journal of Biological Chemistry 291 (10), pp. 4982 - 4997 (2016)
29.
Journal Article
Barahimipour, R.; Neupert, J.; Bock, R.: Efficient expression of nuclear transgenes in the green alga Chlamydomonas: synthesis of an HIV antigen and development of a new selectable marker. Plant Molecular Biology 90 (4-5), pp. 403 - 418 (2016)
30.
Journal Article
Daloso, D. M.; Williams, T. C. R.; Antunes, W. C.; Pinheiro, D. P.; Mueller, C.; Loureiro, M. E.; Fernie, A. R.: Guard cell-specific upregulation of sucrose synthase 3 reveals that the role of sucrose in stomatal function is primarily energetic. New Phytologist 209 (4), pp. 1470 - 1483 (2016)
31.
Journal Article
de Michele, R.; McFarlane, H. E.; Parsons, H. T.; Meents, M. J.; Lao, J.; Fernandez-Nino, S. M. G.; Petzold, C. J.; Frommer, W. B.; Samuels, A. L.; Heazlewood, J. L.: Free-Flow Electrophoresis of Plasma Membrane Vesicles Enriched by Two-Phase Partitioning Enhances the Quality of the Proteome from Arabidopsis Seedlings. Journal of Proteome Research 15 (3), pp. 900 - 913 (2016)
32.
Journal Article
Filippou, P.; Antoniou, C.; Obata, T.; Van Der Kelen, K.; Harokopos, V.; Kanetis, L.; Aidinis, V.; Van Breusegem, F.; Fernie, A. R.; Fotopoulos, V.: Kresoxim-methyl primes Medicago truncatula plants against abiotic stress factors via altered reactive oxygen and nitrogen species signalling leading to downstream transcriptional and metabolic readjustment. Journal of Experimental Botany 67 (5), pp. 1259 - 1274 (2016)
33.
Journal Article
Sanglard, L. M. V. P.; Detmann, K. C.; Martins, S. C. V.; Teixeira, R. A.; Pereira, L. F.; Sanglard, M. L.; Fernie, A. R.; Araujo, W. L.; DaMatta, F. M.: The role of silicon in metabolic acclimation of rice plants challenged with arsenic. Environmental and Experimental Botany 123, pp. 22 - 36 (2016)
34.
Journal Article
Zoschke, R.; Watkins, K. P.; Miranda, R. G.; Barkan, A.: The PPR-SMR protein PPR53 enhances the stability and translation of specific chloroplast RNAs in maize. The Plant Journal 85 (5), pp. 594 - 606 (2016)
35.
Journal Article
Gaupels, F.; Furch, A. C. U.; Zimmermann, M. R.; Chen, F.; Keever, V.; Buhtz, A.; Kehr, J.; Sarioglu, H.; Kogel, K.-H.; Dumer, J.: Systemic Induction of NO-, Redox-, and cGMP Signaling in the Pumpkin Extrafascicular Phloem upon Local Leaf Wounding. Frontiers in Plant Science 7, 154 (2016)
36.
Journal Article
Liang, C.; Cheng, S.; Zhang, Y.; Sun, Y.; Fernie, A. R.; Kang, K.; Panagiotou, G.; Lo, C.; Lim, B. L.: Transcriptomic, proteomic and metabolic changes in Arabidopsis thaliana leaves after the onset of illumination. BMC Plant Biology 16, 43 (2016)
37.
Journal Article
Omranian, N.; Eloundou-Mbebi, J. M. O.; Mueller-Roeber, B.; Nikoloski, Z.: Gene regulatory network inference using fused LASSO on multiple data sets. Scientific Reports 6, 20533 (2016)
38.
Journal Article
Hu, C.; Tohge, T.; Chan, S.-A.; Song, Y.; Rao, J.; Cui, B.; Lin, H.; Wang, L.; Fernie, A. R.; Zhang, D. et al.; Shi, J.: Identification of Conserved and Diverse Metabolic Shifts during Rice Grain Development. Scientific Reports 6, 20942 (2016)
39.
Journal Article
Bechtold, U.; Penfold, C. A.; Jenkins, D. J.; Legaie, R.; Moore, J. D.; Lawson, T.; Matthews, J. S. A.; Vialet-Chabrand, S. R. M.; Baxter, L.; Subramaniam, S. et al.; Hickman, R.; Florance, H.; Sambles, C.; Salmon, D. L.; Feil, R.; Bowden, L.; Hill, C.; Baker, N. R.; Lunn, J. E.; Finkenstaedt, B.; Mead, A.; Buchanan-Wollaston, V.; Beynon, J.; Rand, D. A.; Wild, D. L.; Denby, K. J.; Ott, S.; Smirnoff, N.; Mullineaux, P. M.: Time-Series Transcriptomics Reveals That AGAMOUS-LIKE22 Affects Primary Metabolism and Developmental Processes in Drought-Stressed Arabidopsis. The Plant Cell 28 (2), pp. 345 - 366 (2016)
40.
Journal Article
Colinas, M.; Eisenhut, M.; Tohge, T.; Pesquera, M.; Fernie, A. R.; Weber, A. P. M.; Fitzpatrick, T. B.: Balancing of B-6 Vitamers Is Essential for Plant Development and Metabolism in Arabidopsis. The Plant Cell 28 (2), pp. 439 - 453 (2016)
41.
Journal Article
Cuadros-Inostroza, A. C.; Ruiz-Lara, S.; Gonzalez, E.; Eckardt, A.; Willmitzer, L.; Pena-Cortes, H.: GC-MS metabolic profiling of Cabernet Sauvignon and Merlot cultivars during grapevine berry development and network analysis reveals a stage- and cultivar-dependent connectivity of primary metabolites. Metabolomics 12 (2), 39 (2016)
42.
Journal Article
Michaeli, S.; Galili, G.; Genschik, P.; Fernie, A. R.; Avin-Wittenberg, T.: Autophagy in Plants - What's New on the Menu? Trends in Plant Science 21 (2), pp. 134 - 144 (2016)
43.
Journal Article
Moschen, S.; Bengoa Luoni, S.; Di Rienzo, J. A.; del Pilar Caro, M.; Tohge, T.; Watanabe, M.; Hollmann, J.; Gonzalez, S.; Rivarola, M.; Garcia-Garcia, F. et al.; Dopazo, J.; Esteban Hopp, H.; Hoefgen, R.; Fernie, A. R.; Paniego, N.; Fernandez, P.; Heinz, R. A.: Integrating transcriptomic and metabolomic analysis to understand natural leaf senescence in sunflower. Plant Biotechnology Journal 14 (2), pp. 719 - 734 (2016)
44.
Journal Article
Provart, N. J.; Alonso, J.; Assmann, S. M.; Bergmann, D.; Brady, S. M.; Brkljacic, J.; Browse, J.; Chapple, C.; Colot, V.; Cutler, S. et al.; Dangl, J.; Ehrhardt, D.; Friesner, J. D.; Frommer, W. B.; Grotewold, E.; Meyerowitz, E.; Nemhauser, J.; Nordborg, M.; Pikaard, C.; Shanklin, J.; Somerville, C.; Stitt, M.; Torii, K. U.; Waese, J.; Wagner, D.; McCourt, P.: 50 years of Arabidopsis research: highlights and future directions. New Phytologist 209 (3), pp. 921 - 944 (2016)
45.
Journal Article
Aarabi, F.; Kusajima, M.; Tohge, T.; Konishi, T.; Gigolashvili, T.; Takamune, M.; Sasazaki, Y.; Watanabe, M.; Nakashita, H.; Fernie, A. R. et al.; Saito, K.; Takahashi, H.; Hubberten, H. M.; Hoefgen, R.; Maruyama-Nakashita, A.: Sulfur deficiency–induced repressor proteins optimize glucosinolate biosynthesis in plants. Science Advances 2 (10), e1601087 (2016)
46.
Journal Article
Allu, A. D.; Brotman, Y.; Xue, G.; Balazadeh, S.: Transcription factor ANAC032 modulates JA/SA signalling in response to Pseudomonas syringae infection. EMBO Reports 17 (11), pp. 1499 - 1671 (2016)
47.
Journal Article
Alves de Castro, P.; dos Reis, T. F.; Dolan, S. K.; Oliveira Manfiolli, A.; Brown, N. A.; Jones, G. W.; Doyle, S.; Riaño-Pachón, D. M.; Squina, F. M.; Caldana, C. et al.; Singh, A.; Del Poeta, M.; Hagiwara, D.; Silva-Rocha, R.; Goldman, G. H.: The Aspergillus fumigatus SchASCH9 kinase modulates SakAHOG1 MAP kinase activity and it is essential for virulence. Molecular Microbiology 102 (4), pp. 642 - 671 (2016)
48.
Journal Article
Antonio, C.; Päpke, C.; Rocha, M.; Diab, H.; Limami, A. M.; Obata, T.; Fernie, A. R.; van Dongen, J.: Regulation of Primary Metabolism in Response to Low Oxygen Availability as Revealed by Carbon and Nitrogen Isotope Redistribution. Plant Physiology 170 (1), pp. 43 - 56 (2016)
49.
Journal Article
Aranda-Sicilia, M.N.; Aboukila, A.; Armbruster, U.; Cagnac, O.; Schumann, T.; Kunz, H.-H.; Jahns, P.; Rodríguez-Rosales, M.P.; Sze, H.; Venema, K.: Envelope K+/H+ antiporters AtKEA1 and AtKEA2 function in plastid development. Plant Physiology 172 (1), pp. 441 - 449 (2016)
50.
Journal Article
Armbruster, U.; Leonelli, L.; Correa Galvis, V.; Strand, D.; Quinn, E.H.; Jonikas, M.C.; Niyogi, K.K.: Regulation and levels of the thylakoid K+/H+ antiporter KEA3 shape the dynamic response of photosynthesis in fluctuating light. Plant and Cell Physiology 57 (7), pp. 1557 - 1567 (2016)
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