Max Planck Institute of Molecular Plant Physiology

All Publications

Journal Article (4461)

1.

Journal Article

Silva, R.; Siqueira, J.; Batista-Silva, W.; Silva, M.; Wakin, T.; Vargas, J.; Vilela, G.; Ribeiro, R.; Neto, D.; Azevedo, A. et al.; Ribeiro, C.; Fernie, A. R.; Nunes-Nesi, A.; Araújo, W.: The improved auxin signalling via entire mutation enhances aluminium tolerance in tomato. Plant Science 367, 113027 (2026)

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2.

Journal Article

Bente, H.; Müller, R. L. J.; Donath, A.; Walther, D.; Köhler, C.: Samplify: a versatile tool for image-based segmentation and annotation of seed abortion phenotypes. New Phytologist, pp. 1964 - 1978 (2026)

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3.

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De Guzman, C.; Perfinian, G.; Alseekh, S.; Fernie, A. R.; Tiozon, R. J.; Sreenivasulu, N.: Integrative machine learning and structure-based computational modeling reveal germination-driven enrichment of bioactive dipeptides in pigmented rice. FOOD BIOSCIENCE 79, 108610 (2026)

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4.

Journal Article

Abdrakhmanov, A.; Ethier, E.; Anisimova, A. S.; Grujic, N.; Papareddy, R. K.; Clavel, M.; Karagöz, G. E.; Hallacli, E.; Dagdas, Y.: A lineage-specific selective autophagy receptor module mediates P-body turnover. Developmental Cell 61 (4), pp. 744 - 759 (2026)

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5.

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Andreou-Huotari, G.M.; Brosché, M.; Hoffmann, J.; Nikoloski, Z.; Laitinen, R.A.E.: Spliceosomal factor SmF modulates temperature-mediated flower and leaf size plasticity in Arabidopsis thaliana. Plant, Cell and Environment 49 (4), pp. 2024 - 2027 (2026)

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6.

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Cao, P.; Shen, S.; Yang, J.; Fernie, A. R.; Luo, J.; Wang, S.: Phenolamides: metabolic architects of plant adaptation. Trends in Plant Science 31 (4), pp. 394 - 406 (2026)

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7.

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Deng, R.; Zhang, C.; Fernie, A. R.; Zhang, Y.: AI for plant protein–protein interactions prediction. The Plant Journal 126 (1), e70867 (2026)

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8.

Journal Article

Dong, J.; Zhang, L.; Ouyang, Q.; Zhang, F.; Zheng, W.; Fernie, A. R.; Song, Y.; Zhou, K.; Zhu, Z.; Yu, Y.: Abscisic acid alleviates cadmium toxicity in oilseed rape plants by regulating its accumulation, subcellular distribution, and ascorbate-glutathione cycle. Environmental and Experimental Botany 244, 106354 (2026)

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9.

Journal Article

Fernie, A. R.; Kai, G.; Luo, J.: Advances in plant natural products: Biosynthesis, bioengineering, and applications. Journal of Integrative Plant Biology 68 (4), pp. 845 - 848 (2026)

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10.

Journal Article

Gouveia, D. G.; Barrios, W. E. B.; Martins, A. O.; Cavalcanti, J. H.; Rosado-Souza, L.; Siqueira, J. A.; de Menezes Daloso, D.; Fernie, A. R.; Nunes‐Nesi, A.; Weber, A. P. M. et al.; Araújo, W. L.: Lysine Biosynthesis Defines a Metabolic Checkpoint for Gibberellin‐Mediated Growth inArabidopsis thaliana. Plant, Cell and Environment (2026)

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11.

Journal Article

Huß, S.; Nikoloski, Z.: NeuralFlux: Estimation of reaction fluxes at a genome-scale level from time-resolved isotope labelling patterns using deep learning. Plant Biotechnology Journal 24 (4), pp. 2076 - 2078 (2026)

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12.

Journal Article

Iglesias-Sanchez, A.; García-Carbonell, S.; Fernie, A. R.; Pujol, M.; Florez-Sarasa, I.: Fruit respiration: putting alternative pathways into perspective. New Phytologist 250 (1), pp. 54 - 73 (2026)

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13.

Journal Article

Iltas, Ö.; Salomon, L.; Kovačik, M.; Čertner, M.; Talacko, P.; Harant, K.; Hafidh, S.; Lafon Placette, C.: The abundance of pollen coat small signaling proteins shows limited convergence between independent selfing transitions inArabidopsisandCapsella. New Phytologist (2026)

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14.

Journal Article

Jia, X.; Zhang, X.; Chen, X.; Fernie, A. R.; Wen, W.: The horizontally transferred gene, CsMTAN, rewired purine traffic to build caffeine factories in tea leaves. Journal of Integrative Plant Biology 68 (4), pp. 1067 - 1081 (2026)

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15.

Journal Article

Kelly, G.; Meiri, D.; Hagbi, S. I.; Sharma, D.; Doron‐Faigenboim, A.; Egbaria, A.; Belausov, E.; Halaly‐Basha, T.; Mei, J.; Zhang, X. et al.; Yaaran, A.; Gal, A.; Zach, Y. Y.; Fernie, A. R.; Ye, W.; Brotman, Y.; Sade, N.: Natural variation links seedling hypocotyl growth with water loss in Arabidopsis. The Plant Journal 126 (1), e70862 (2026)

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16.

Journal Article

Lopes, A.; Sandoval-Ibanez, O.; Arrivault, S.; Rolo, D.; Loiacono, F.V.; Erban, A.; Karcher, D.; Obst, S.; Ruf, S.; Kopka, J. et al.; Bock, R.: Plastid engineering for photosynthesis-driven synthesis of hyaluronic acid in tobacco. Plant Biotechnology Journal 24 (4), pp. 2541 - 2558 (2026)

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17.

Journal Article

Moratti, F. G.; Lonoce, C.; Obst, S.; Kroop, X.; Karcher, D.; Ruf, S.; Bock, R.: A set of intein-split selectable marker genes for efficient co-transformation. Plant Biotechnology Journal 24 (4), pp. 2439 - 2441 (2026)

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18.

Journal Article

Rosa‐Téllez, S.; García‐Calderón, M.; Medeiros, D.B.; Márquez, A. J.; Fernie, A. R.; Betti, M.: Disruption of Asparagine Synthetase Is Associated to Increased Biomass inLotus japonicus. Plant Biotechnology Journal (2026)

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19.

Journal Article

Siani, R.; Gutjahr, C.; Schloter, M.: Adaptation to a host-associated lifestyle is associated with convergent loss of flagella-related genes in Pseudomonadota. BMC Genomics 27, 366 (2026)

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20.

Journal Article

Sierra, G. P.; Orejuela, A.; Orozco, C. I.; Pérez‐Mesa, P. A.; Alseekh, S.; Fernandez‐Hilario, R.; Fernández‐Alonso, J. L.; Smith, S. D.; Fernie, A. R.; Roda, F.: A new arborescent genus of Datureae (Solanaceae) from Colombia and Peru, with implications for alkaloid evolution. TAXON 75 (2), e70130 (2026)

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21.

Journal Article

Zhang, W.; Wang, Y.; Li, W.; Wei, Y.; Wu, S.; Zhuo, D.; Ye, M.; Chen, Y.; Huang, W.; Li, Y. et al.; Xu, K.; Lai, J.; Fernie, A. R.; Yan, S.: Temporal dynamics of protein phosphorylation andS‐nitrosylation direct maize seed germination programs. The Plant Journal 126 (2026)

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22.

Journal Article

Baccolini, C.; Ishihara, H.; Feil, R.; de Souza, L. P.; Alseekh, S.; Walther, D.; Fernie, A. R.; Stitt, M.; Lunn, J. E.; Arrivault, S.: Exploring the diversity of the CO2-concentrating mechanism (CCM) in different C4 subtypes. Journal of Experimental Botany (2026)

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23.

Journal Article

Figueiredo, D.D.; Sharma, R. A.: The mysterious dialogue between the embryo, endosperm, and seed coat, and its implications on seed traits. Journal of Experimental Botany 77 (7), pp. 1876 - 1990 (2026)

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24.

Journal Article

Gonzalez-Duran, E.; Liang, Z.; Forner, J.; Kleinschmidt, D.; Wang, W.; Jiang, L.; Chung K. P. (Organelle Biology and Biotechnology, (. B. a. B.; Bock, R.: High-frequency biparental inheritance of plant mitochondria upon chilling stress and loss of a genome-degrading nuclease. Nature Plants 12, pp. 571 - 582 (2026)

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25.

Journal Article

Harding, E. A.; Karbasi, A.; Fernie, A. R.; Bulut, M.: Domestication and genome evolution in allium crops: From hybrid origins to breeding perspectives. iScience 29 (3), 114922 (2026)

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26.

Journal Article

Hoffmann, L.; Duchmann, M.; Lazarow, K.; Huang, Y.; Lukas, F.; Lo, W.; Feil, R.; Schmied, C.; Lehmann, M.; Lunn, J. E. et al.; Piazza, I.; von Kries, J.; Haucke, V.; Maritzen, T.: Fructose-1,6-bisphosphate couples glycolytic activity to cell adhesion. Nature Cell Biology 28, pp. 739 - 753 (2026)

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27.

Journal Article

Ilieva, Y.; Gupta, S.; Wittenberg, M.; Ivanova, V.; Kazakov, P.; Alseekh, S.; Sujeeth, N.; Gechev, T.: A plant biostimulant from Ascophyllum nodosum protects raspberry from heat-induced sunburn. Plant Stress 20, 101315 (2026)

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28.

Journal Article

Kanwal, F.; Yang, J.; Fernie, A. R.; Wang, S.: Glucosylation-mediated kin avoidance inspires parasite-resistant crops. Trends in Plant Science (2026)

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29.

Journal Article

Le veve, A.; Iltas, Ö.; Dutheil, J.; Lafon Placette, C.: Limited directional selection but coevolutionary signals among imprinted genes in A. lyrata. Peer Community Journal 6, e26 (2026)

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30.

Journal Article

Liang, Y.; Gao, Y.; Fontana, A.; Abt, M.; Gicgier, A.; Gehring, M.; Liu, C.; Sharma, M.; Zoschke, R.; Zeeman, S. C. et al.; Pfister, B.: Maturase K forms a plastidial splicing complex with a neofunctionalized branching enzyme. Nature Communications (2026)

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31.

Journal Article

Ma, L.; Zuo, J.; Fernie, A. R.; Liu, S.; Zhou, X.; Jing, Z.; Wang, Y.; Feng, X.; Ren, Y.; Wu, C. et al.; Wang, R.; Shi, Y.; Zheng, Y.: A sweet corn metabolic regulatory network spanning the entire life cycle. Molecular Horticulture 6, 18 (2026)

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32.

Journal Article

Østerlund, I.; Neumann, A.; Ma, Z.; Miao, Y.; Persson, S.; Nikoloski, Z.: GraFT: A robust network-based spatiotemporal analysis of filamentous structures. Science Advances 12 (13), eadz4132 (2026)

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33.

Journal Article

Qiu, Y.; Köhler, C.: The Other Giant: Functional Significance and Divergence of Type I MADS-Box Genes in the Evolution of Land Plants. Journal of Experimental Botany (2026)

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34.

Journal Article

Rahimi-Majd, M.; Ferguson, J.; Genty, B.; Kromdijk, J.; Nikoloski, Z.: Unraveling a hidden effective signal in leaf hyperspectral reflectance data. Science of Remote Sensing 13, 100405 (2026)

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35.

Journal Article

Sánchez de Medina-Hernández, V.; Nava-García, M.M.; Bianchi, A.; Clavel, M.; Papareddy, R.K.; Benchalel, L.; Andreev, V.I.; Mathur, V.; Mohseni, A.; Garcia-León, M. et al.; Gao, P.; de la Concepción, J.C.; Picchianti, L.; Grujic, N.; Kobylinska, R.; Abdrakhmanov, A.; Duverge, H.; Anand, G.; Leibrock, N.; Ma, J.; Raffeiner, M.; Crawford, T.S.; Argirò, L.; Matuszkiewicz, M.; Wun, C.-L.; Kanne, J.V.; Meinhart, A.; Roitinger, E.; Bäurle, I.; Kang, B.H.; Petersen, M.; Üstün, S.; Kulathu, Y.; Clausen, T.; Ramundo, S.; Dagdas, Y.: Cross-species interactome analysis uncovers a conserved selective autophagy mechanism for protein quality control in plants. Developmental Cell 61 (3), pp. 655 - 675 (2026)

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36.

Journal Article

Signorelli, S.; Velappan, Y.; Hermawaty, D.; Feil, R.; Couture, C.; Considine, J. A.; Lunn, J. E.; Considine, M. J.: Seasonal changes in the physiology and metabolism of grapevine latent buds. Journal of Experimental Botany 77 (6), pp. 1756 - 1772 (2026)

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37.

Journal Article

Soleymani Babadi, F.; Razaghi-Moghadam, Z.; Nikoloski, Z.: Accurate prediction of flux distributions compatible with metabolite concentration effects in genome-scale metabolic networks. PLOS Computational Biology 22, e1014066 (2026)

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38.

Journal Article

Timm, S.; Florian, A.; Fernie, A. R.; Bauwe, H.: Arabidopsis photorespiration is not limited by mitochondrial serine hydroxymethyltransferase 1. Planta 263, 114 (2026)

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39.

Journal Article

Tiozon, R. J. N.; Zhan, J.; De Guzman, C. D.; Li, Z.; Zhang, X.; Yan, J.; Sreenivasulu, N.; Fernie, A. R.: Cereal protein biofortification at the interface of nutrition, yield and sustainability. Nature Plants 12, pp. 683 - 694 (2026)

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40.

Journal Article

Usländer, A.; Haag, M.; Cheng, A.; Lederer, B.; Khoo, J. Y.; Dunker, F.; Acosta, I.; Weiberg, A.; Gutjahr, C.: Cross-kingdom RNA interference promotes arbuscular mycorrhiza development. Nature Plants 12, pp. 695 - 702 (2026)

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41.

Journal Article

Wu, X.; Bellagio, T.; Peng, Y.; Czech, L.; Lin, M.; Lang, P.; Epstein, R.; Abdelaziz, M.; Alexander, J.; Alonso-Blanco, C. et al.; Andersen, H. L.; Berbel, M.; Bergelson, J.; Bossdorf, O.; Burghardt, L.; Caton-Darby, M.; Colautti, R.; Delker, C.; Dimitrakopoulos, P. G.; Donohue, K.; Durka, W.; Escribano-Avila, G.; Franks, S. J.; Fritschi, F. B.; Galanidis, A.; Garcia-Fernández, A.; García-Muñoz, A.; Hamann, E.; Hutt, A.; Iriondo, J. M.; Juenger, T. E.; Keller, S. R.; Koehl, K. I.; Korte, A.; Korte, P.; Kutschera, A.; Lara-Romero, C.; Leventhal, L.; Maag, D.; Marcer, A.; March-Salas, M.; de Meaux, J.; Méndez-Vigo, B.; Morente-López, J.; Morton, T. C.; Münzbergova, Z.; Muola, A.; Nomoto, H. A.; Pärtel, M.; Picó, F. X.; Quarles-Chidyagwai, B.; Quint, M.; Reichelt, N.; Rudak, A.; Schmitt, J.; Schmitz, G.; Seifan, M.; Snoek, B. L.; Stam, R.; Stift, M.; Stinchcombe, J. R.; Taylor, M. A.; Tiffin, P.; Till-Bottraud, I.; Traveset, A.; Valay, J.-G.; Van Zanten, M.; Vandvik, V.; Violle, C.; Weigel, D.; Wódkiewicz, M.; Vasseur, F.; Scheepens, J. F.; Exposito-Alonso, M.: Rapid adaptation and extinction in synchronized outdoor evolution experiments of Arabidopsis. Science Magazine 391 (9792), eadz0777 (2026)

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42.

Journal Article

Xue, J.; Mansfield, S.; Samuels, A.; Sampathkumar, A.; Schneider, R.: A guide to reproducible cellulose synthase density and speed measurements in Arabidopsis thaliana. Bio-protocol 16 (6), e5634 (2026)

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43.

Journal Article

Zhang, Y.; Shi, J.; Fernie, A. R.: Paclitaxel. Current Biology 36, pp. R238 - R240 (2026)

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44.

Journal Article

Fàbregas, N.; Yoshida, T.; Fernie, A. R.: Bidirectional crosstalk between plant hormone signaling and metabolism. Plant Physiology 200 (2), kiaf630 (2026)

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45.

Journal Article

Hasbioglu, Y.; Mavrothalassiti, E.; Kragler, F.: Tissue-Specific High-Quality Protoplast Isolation for Single-Cell Analyses in Arabidopsis. Journal of Visualized Experiments (2026)

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46.

Journal Article

Hobby, D.; Lindner, R.; Mbebi, A. J.; Tong, H.; Nikoloski, Z.: Comparative analysis of genomic prediction approaches for multiple time-resolved traits in maize. Theoretical and Applied Genetics 139, 63 (2026)

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47.

Journal Article

Li, Y.; Li, K.; Lu, J.; Bulut, M.; Hou, H.; Zaman, Q. U.; Zhang, R.; Yang, Z.; Yang, C.; Zhan, C. et al.; Wang, G.; Chen, T.; Liu, X.; Zhao, Q.; Shen, S.; Fernie, A. R.; Luo, J.: Modulating TPP riboswitch activity simultaneously enhances crop yield, nutritional quality and stress tolerance. Nature Communications, 3328, p. 17 (2026)

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48.

Journal Article

Liu, P.; Yang, J.; Xu, Z.; Han, Y.; Wang, S.; Nikoloski, Z.; Yang, J.: Precision modification and de novo design of metabolic pathways to enhance crop nutritional quality and stress tolerance. The Crop Journal 14 (1), pp. 37 - 47 (2026)

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49.

Journal Article

Liu, X.; Zuo, J.; Tao, J.; Fernie, A. R.; Wang, H.; Jiang, Y.; Ma, L.; He, X.; Feng, X.; Liu, Y. et al.; Zheng, Y.; Wang, Y.: A multi-omics dissection of the molecular mechanisms underlying water soaking in fresh-cut watermelon. Molecular Horticulture 6, 20 (2026)

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50.

Journal Article

Lu, X.; He, Y.; Weng, W.; Liu, Z.; Gao, Y.; Shi, Y.; Li, W.; Lai, D.; Zhao, M.; Jha, R. et al.; Zhao, H.; Li, G.; Guan, C.; Shao, S.; Ruan, J.; Woo, S. H.; Ouyang, Y.; Quinet, M.; Georgiev, M. I.; Fernie, A. R.; Hou, C.; Zhang, K.; Liu, X.; Zhou, M.: Domestication of tartary buckwheat shaped a regulatory module for seedling salt tolerance by targeting the magnesium transporter gene FtMGT2. Advanced Science 13 (8), e11570 (2026)

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