All Publications

Journal Article (3168)

  1. 1.
    Journal Article
    Batista-Silva, W.; Medeiros, D. B.; Rodrigues-Salvador, A.; Daloso, D. M.; Omena-Garcia, R. P.; Oliveira, F. S.; Pino, L. E.; Pereira Peres, L. E.; Nunes-Nesi, A.; Fernie, A. R. et al.; Zsogon, A.; Araujo, W. L.: Modulation of auxin signalling through DIAGETROPICA and ENTIRE differentially affects tomato plant growth via changes in photosynthetic and mitochondrial metabolism. Plant, Cell and Environment 42 (2), pp. 448 - 465 (2019)
  2. 2.
    Journal Article
    Boehm, C.R.; Bock, R.: Recent Advances and Current Challenges in Synthetic Biology of the Plastid Genetic System and Metabolism. Plant Physiology 179 (3), pp. 794 - 802 (2019)
  3. 3.
    Journal Article
    Brog, Y. M.; Osorio, S.; Yichie, Y.; Alseekh, S.; Bensal, E.; Kochevenko, A.; Zamir, D.; Fernie, A. R.: A Solanum neorickii introgression population providing a powerful complement to the extensively characterized Solanum pennellii population. The Plant Journal 97 (2), pp. 391 - 403 (2019)
  4. 4.
    Journal Article
    da Fonseca-Pereira, P.; Daloso, D. M.; Gago, J.; de Oliveira Silva, F.M.; Condori-Apfata, J.A.; Florez-Sarasa, I. D.; Tohge, T.; Reichheld, J.-P.; Nunes-Nesi, A.; Fernie, A. R. et al.; Araújo, W.L.: The Mitochondrial Thioredoxin System Contributes to the Metabolic Responses Under Drought Episodes in Arabidopsis. Plant amp; cell physiology 60 (1), pp. 213 - 229 (2019)
  5. 5.
    Journal Article
    De Smet, B.; Willems, P.; Fernandez-Fernandez, A. D.; Alseekh, S.; Fernie, A. R.; Messens, J.; Van Breusegem, F.: In vivo detection of protein cysteine sulfenylation in plastids. The Plant Journal 97 (4), pp. 765 - 778 (2019)
  6. 6.
    Journal Article
    Fàbregas, N.; Fernie, A. R.: The metabolic response to drought. Journal of Experimental Botany 70 (4), pp. 1077 - 1085 (2019)
  7. 7.
    Journal Article
    Fang, C.; Fernie, A. R.; Luo, J.: Exploring the Diversity of Plant Metabolism. Trends in Plant Science 24 (1), pp. 83 - 98 (2019)
  8. 8.
    Journal Article
    Fernie, A. R.; Gutierrez-Marcos, J.: From genome to phenome: genome-wide association studies and other approaches that bridge the genotype to phenotpe gap. Plant Journal 97 (1), pp. 5 - 7 (2019)
  9. 9.
    Journal Article
    Ferrari, C.; Proost, S.; Janowski, M.; Becker, J.; Nikoloski, Z.; Bhattacharya, D.; Price, D.; Tohge, T.; Bar-Even, A.; Fernie, A. R. et al.; Stitt, M.; Mutwil, M.: Kingdom-wide comparison reveals the evolution of diurnal gene expression in Archaeplastida. Nature Communications 10, 737 (2019)
  10. 10.
    Journal Article
    Flis, A.; Mengin, V.; Ivakov, A.; Mugford, S.T.; Hubberten, H. M.; Encke, B.; Krohn, N.; Höhne, M.; Feil, R.; Hoefgen, R. et al.; Lunn, J. E.; Millar, A.J.; Smith, A.M.; Sulpice, R.; Stitt, M.: Multiple circadian clock outputs regulate diel turnover of carbon and nitrogen reserves. Plant, Cell and Environment 42 (2), pp. 549 - 573 (2019)
  11. 11.
    Journal Article
    Goehring, I.; Sauter, N. S.; Catchpole, G.; Assmann, A.; Shu, L.; Zien, K. S.; Moehlig, M.; Pfeiffer, A. F. H.; Oberholzer, J.; Willmitzer, L. et al.; Spranger, J.; Maedler, K.: Identification of an intracellular metabolic signature impairing beta cell function in the rat beta cell line INS-1E and human islets (vol 54, pg 2584, 2011). Diabetologia 62 (3), pp. 553 - 554 (2019)
  12. 12.
    Journal Article
    Kesten, C.; Wallmann, A.; Schneider, R.; McFarlane, H. E.; Diehl, A.; Khan, G. A.; van Rossum, B.-J.; Lampugnani, E. R.; Szymanski, W. G.; Cremer, N. et al.; Schmieder, P.; Ford, K. L.; Seiter, F.; Heazlewood, J. L.; Sanchez-Rodriguez, C.; Oschkinat, H.; Persson, S.: The companion of cellulose synthase 1 confers salt tolerance through a Tau-like mechanism in plants. Nature Communications 10 (1), 857 (2019)
  13. 13.
    Journal Article
    Kesten, C.; Wallmann, A.; Schneider, R.; McFarlane, H. E.; Diehl, A.; Khan, G. A.; van Rossum, B.-J.; Lampugnani, E. R.; Szymanski, W. G.; Cremer, N. et al.; Schmieder, P.; Ford, K. L.; Seiter, F.; Heazlewood, J. L.; Sanchez-Rodriguez, C.; Oschkinat, H.; Persson, S.: The companion of cellulose synthase 1 confers salt tolerance through a Tau-like mechanism in plants. Nature Communications 10 (1), 857 (2019)
  14. 14.
    Journal Article
    Koubaa, S.; Bremer, A.; Hincha, D. K.; Brini, F.: Structural properties and enzyme stabilization function of the intrinsically disordered LEA_4 protein TdLEA3 from wheat. Scientific Reports 9 (1), 3720 (2019)
  15. 15.
    Journal Article
    Kudo, M.; Kidokoro, S.; Yoshida, T.; Mizoi, J.; Kojima, M.; Takebayashi, Y.; Sakakibara, H.; Fernie, A. R.; Shinozaki, K.; Yamaguchi-Shinozaki, K.: A gene-stacking approach to overcome the trade-off between drought stress tolerance and growth in Arabidopsis. The Plant Journal 97 (2), pp. 240 - 256 (2019)
  16. 16.
    Journal Article
    Kudo, M.; Kidokoro, S.; Yoshida, T.; Mizoi, J.; Kojima, M.; Takebayashi, Y.; Sakakibara, H.; Fernie, A. R.; Shinozaki, K.; Yamaguchi-Shinozaki, K.: A gene-stacking approach to overcome the trade-off between drought stress tolerance and growth in Arabidopsis. The Plant Journal 97 (2), pp. 240 - 256 (2019)
  17. 17.
    Journal Article
    Küken, A.; Eloundou-Mbebi, J. M. O.; Basler, G.; Nikoloski, Z.: Cellular determinants of metabolite concentration ranges. PLoS Computational Biology 15 (1), e1006687 (2019)
  18. 18.
    Journal Article
    Küken, A.; Nikoloski, Z.: Computational Approaches to Design and Test Plant Synthetic Metabolic Pathways. Plant Physiology 179 (3), pp. 894 - 906 (2019)
  19. 19.
    Journal Article
    Laitinen, R.; Nikoloski, Z.: Genetic basis of plasticity in plants. Journal of Experimental Botany 70 (3), pp. 739 - 745 (2019)
  20. 20.
    Journal Article
    Lazare, S.; Bechar, D.; Fernie, A. R.; Brotman, Y.; Zaccai, M.: The proof is in the bulb: glycerol influences key stages of lily development. The Plant Journal 97 (2), pp. 321 - 340 (2019)
  21. 21.
    Journal Article
    Levey, M.; Timm, S.; Mettler-Altmann, T.; Borghi, G.L.; Koczor, M.; Arrivault, S.; Pm Weber, A.; Bauwe, H.; Gowik, U.; Westhoff, P.: Efficient 2-phosphoglycolate degradation is required to maintain carbon assimilation and allocation in the C4 plant Flaveria bidentis. Journal of Experimental Botany 70 (2), pp. 575 - 587 (2019)
  22. 22.
    Journal Article
    Li, J.; Tietz, S.; Cruz, J. A.; Strand, D.; Xu, Y.; Chen, J.; Kramer, D. M.; Hu, J.: Photometric screens identified Arabidopsis peroxisome proteins that impact photosynthesis under dynamic light conditions. PLANT JOURNAL 97 (3), pp. 460 - 474 (2019)
  23. 23.
    Journal Article
    Li, Y.; Lu, Y.; Li, L.; Chu, Z.; Zhang, H.; Li, H.; Fernie, A. R.; Ouyang, B.: Impairment of hormone pathways results in a general disturbance of fruit primary metabolism in tomato. Food Chemistry 274, pp. 170 - 179 (2019)
  24. 24.
    Journal Article
    Ligas, J.; Pineau, E.; Bock, R.; Huynen, M. A.; Meyer, E. H.: The assembly pathway of complex I in Arabidopsis thaliana. The Plant Journal 97 (3), pp. 447 - 459 (2019)
  25. 25.
    Journal Article
    Lortzing, V.; Oberlaender, J.; Lortzing, T.; Tohge, T.; Steppuhn, A.; Kunze, R.; Hilker, M.: Insect egg deposition renders plant defence against hatching larvae more effective in a salicylic acid-dependent manner. Plant, Cell and Environment 42 (3 - SI), pp. 1019 - 1032 (2019)
  26. 26.
    Journal Article
    Martins, A. O.; Omena-Garcia, R. P.; Oliveira, F. S.; Silva, W. A.; Hajirezaei, M.-R.; Vallarino, J. G.; Ribeiro, D. M.; Fernie, A. R.; Nunes-Nesi, A.; Araujo, W. L.: Differential root and shoot responses in the metabolism of tomato plants exhibiting reduced levels of gibberellin. Environmental and Experimental Botany 157, pp. 331 - 343 (2019)
  27. 27.
    Journal Article
    Matz, J. M.; Watanabe, M.; Falade, M.; Tohge, T.; Hoefgen, R.; Matuschewski, K.: Plasmodium Para-Aminobenzoate Synthesis and Salvage Resolve Avoidance of Folate Competition and Adaptation to Host Diet. Cell Reports 26 (2), pp. 356 - 363 (2019)
  28. 28.
    Journal Article
    Murik, O.; Tirichine, L.; Prihoda, J.; Thomas, Y.; Araujo, W. L.; Allen, A. E.; Fernie, A. R.; Bowler, C.: Downregulation of mitochondrial alternative oxidase affects chloroplast function, redox status and stress response in a marine diatom. New Phytologist 221 (3), pp. 1303 - 1316 (2019)
  29. 29.
    Journal Article
    Naake, T.; Fernie, A. R.: MetNet: Metabolite Network Prediction from High-Resolution Mass Spectrometry Data in R Aiding Metabolite Annotation. Analytical Chemistry 91 (3), pp. 1768 - 1772 (2019)
  30. 30.
    Journal Article
    Nieuwkoop, T.; Claassens, N. J.; van der Oost, J.: Improved protein production and codon optimization analyses in Escherichia coli by bicistronic design. Microbial Biotechnology 12 (1), pp. 173 - 179 (2019)
  31. 31.
    Journal Article
    Omena-Garcia, R. P.; Martins, A. O.; Medeiros, D.B.; Vallarino, J. G.; Ribeiro, D. M.; Fernie, A. R.; Araújo, W. L.; Nunes-Nesi, A.: Growth and metabolic adjustments in response to gibberellin deficiency in drought stressed tomato plants. Environmental and Experimental Botany 159, pp. 95 - 107 (2019)
  32. 32.
    Journal Article
    Patzke, K.; Prananingrum, P.; Klemens, P. A. W.; Trentmann, O.; Rodrigues, C. M.; Keller, I.; Fernie, A. R.; Geigenberger, P.; Boelter, B.; Lehmann, M. et al.; Schmitz-Esser, S.; Pommerrenig, B.; Haferkamp, I.; Neuhaus, H. E.: The Plastidic Sugar Transporter pSuT Influences Flowering and Affects Cold Responses. Plant Physiology 179 (2), pp. 569 - 587 (2019)
  33. 33.
    Journal Article
    Razaghi-Moghadam, Z.; Namipashaki, A.; Farahmand, S.; Ansari-Pour, N.: Systems genetics of nonsyndromic orofacial clefting provides insights into its complex aetiology. European Journal of Human Genetics 27 (2), pp. 226 - 234 (2019)
  34. 34.
    Journal Article
    Richter, J. A.; Behr, J. H.; Erban, A.; Kopka, J.; Zoerb, C.: Ion-dependent metabolic responses of Vicia faba L. to salt stress. PLANT CELL AND ENVIRONMENT 42 (1-SI), pp. 295 - 309 (2019)
  35. 35.
    Journal Article
    Riedel, S.; Siemiatkowska, B.; Watanabe, M.; Müller, C. S.; Schünemann, V.; Hoefgen, R.; Leimkühler, S.: The ABCB7-Like Transporter PexA in Rhodobacter capsulatus Is Involved in the Translocation of Reactive Sulfur Species. Frontiers in Microbiology 10, 406 (2019)
  36. 36.
    Journal Article
    Ruf, S.; Forner, J.; Hasse, C.; Kroop, X.; Seeger, S.; Schollbach, L.; Schadach, A.; Bock, R.: High-efficiency generation of fertile transplastomic Arabidopsis plants. Nature Plants 5 (3), pp. 282 - 289 (2019)
  37. 37.
    Journal Article
    Sánchez-Guerrero, A.; Fernández del-Saz, N.; Florez-Sarasa, I. D.; Ribas-Carbó, M.; Fernie, A. R.; Jiménez, A.; Sevilla, F.: Coordinated responses of mitochondrial antioxidative enzymes, respiratory pathways and metabolism in Arabidopsis thaliana thioredoxin trxo1 mutants under salinity. Environmental and Experimental Botany 162, pp. 212 - 222 (2019)
  38. 38.
    Journal Article
    Schwachtje, J.; Whitcomb, S. J.; Firmino, A.; Zuther, E.; Hincha, D. K.; Kopka, J.: Induced, Imprinted, and Primed Responses to Changing Environments: Does Metabolism Store and Process Information? Frontiers in Plant Science 10, 106 (2019)
  39. 39.
    Journal Article
    Sedaghatmehr, M.; Thirumalaikumar, V. P.; Kamranfar, I.; Marmagne, A.; Masclaux-Daubresse, C.; Balazadeh, S.: A regulatory role of autophagy for resetting the memory of heat stress in plants. Plant, Cell and Environment 42 (3 - SI), pp. 1054 - 1064 (2019)
  40. 40.
    Journal Article
    Takahashi, D.; Gorka, M.; Erban, A.; Graf, A.; Kopka, J.; Zuther, E.; Hincha, D. K.: Both cold and sub-zero acclimation induce cell wall modification and changes in the extracellular proteome in Arabidopsis thaliana. Scientific Reports 9 (1), 2289 (2019)
  41. 41.
    Journal Article
    Tan, J.; Zhang, F.; Karcher, D.; Bock, R.: Engineering of high-precision base editors for site-specific single nucleotide replacement. Nature Communications 10 (1), 439 (2019)
  42. 42.
    Journal Article
    Torralbo, F.; Vicente, R.; Morcuende, R.; Gonzalez-Murua, C.; Aranjuelo, I.: C and N metabolism in barley leaves and peduncles modulates responsiveness to changing CO2. Journal of Experimental Botany 70 (2), pp. 599 - 611 (2019)
  43. 43.
    Journal Article
    Ulaszewska, M. M.; Weinert, C. H.; Trimigno, A.; Portmann, R.; Andres Lacueva, C.; Badertscher, R.; Brennan, L.; Brunius, C.; Bub, A.; Capozzi, F. et al.; Rosso, M. C.; Cordero, C. E.; Daniel, H.; Durand, S.; Egert, B.; Ferrario, P. G.; Feskens, E. J. M.; Franceschi, P.; Garcia-Aloy, M.; Giacomoni, F.; Giesbertz, P.; Gonzalez-Dominguez, R.; Hanhineva, K.; Hemeryck, L. Y.; Kopka, J.; Kulling, S. E.; Llorach, R.; Manach, C.; Mattivi, F.; Migne, C.; Munger, L. H.; Ott, B.; Picone, G.; Pimentel, G.; Pujos-Guillot, E.; Riccadonna, S.; Rist, M. J.; Rombouts, C.; Rubert, J.; Skurk, T.; Harsha, P. S. C. S.; Van Meulebroek, L.; Vanhaecke, L.; Vazquez-Fresno, R.; Wishart, D.; Vergeres, G.: Nutrimetabolomics: An Integrative Action for Metabolomic Analyses in Human Nutritional Studies. MOLECULAR NUTRITION & FOOD RESEARCH 63 (1-SI), 1800384 (2019)
  44. 44.
    Journal Article
    Vallarino, J. G.; Pott, D. M.; Cruz-Rus, E.; Miranda, L.; Medina-Minguez, J. J.; Valpuesta, V.; Fernie, A. R.; Sánchez-Sevilla, J. F.; Osorio, S.; Amaya, I.: Identification of quantitative trait loci and candidate genes for primary metabolite content in strawberry fruit. Horticulture Research 6 (1), 4 (2019)
  45. 45.
    Journal Article
    Van Dingenen, J.; Hanzalova, K.; Salem, M.A.; Abel, C.; Seibert, T.; Giavalisco, P.; Wahl, V.: Limited nitrogen availability has cultivar-dependent effects on potato tuber yield and tuber quality traits. Food Chemistry 288, pp. 170 - 177 (2019)
  46. 46.
    Journal Article
    Webb, A. A. R.; Seki, M.; Satake, A.; Caldana, C.: Continuous dynamic adjustment of the plant circadian oscillator. Nature Communications 10 (1), 550 (2019)
  47. 47.
    Journal Article
    Weber, A. P. M.; Bar-Even, A.: Update: Improving the Efficiency of Photosynthetic Carbon Reactions. Plant Physiology 179 (3), pp. 803 - 812 (2019)
  48. 48.
    Journal Article
    Wenke, K.; Kopka, J.; Schwachtje, J.; van Dongen, J. T.; Piechulla, B.: Volatiles of rhizobacteria Serratia and Stenotrophomonas alter growth and metabolite composition of Arabidopsis thaliana. Plant Biology 21 (SI suppl.), pp. 109 - 119 (2019)
  49. 49.
    Journal Article
    Yoshida, T.; Obata, T.; Feil, R.; Lunn, J. E.; Fujita, Y.; Yamaguchi-Shinozaki, K.; Fernie, A. R.: The Role of Abscisic Acid Signaling in Maintaining the Metabolic Balance Required for Arabidopsis Growth under Nonstress Conditions. The Plant Cell 31 (1), pp. 84 - 105 (2019)
  50. 50.
    Journal Article
    Zuther, E.; Schaarschmidt, S.; Fischer, A.; Erban, A.; Pagter, M.; Mubeen, U.; Giavalisco, P.; Kopka, J.; Sprenger, H.; Hincha, D. K.: Molecular signatures associated with increased freezing tolerance due to low temperature memory in Arabidopsis. Plant, Cell and Environment 42 (3- SI), pp. 854 - 873 (2019)
 
Go to Editor View
loading content