Publications of the institute

Journal Article (186)

1.
Journal Article
Wallace, J. G.; Bradbury, P. J.; Zhang, N.; Gibon, Y.; Stitt, M.; Buckler, E. S.: Association Mapping across Numerous Traits Reveals Patterns of Functional Variation in Maize. PLoS Genetics 10 (12), e1004845 (2014)
2.
Journal Article
Armbruster, U.; Carrillo, L. R.; Venema, K.; Pavlovic, L.; Schmidtmann, E.; Kornfeld, A.; Jahns, P.; Berry, J. A.; Kramer, D. M.; Jonikas, M. C.: Ion antiport accelerates photosynthetic acclimation in fluctuating light environments. Nature Communications 5, 5439 (2014)
3.
Journal Article
Braun, H.-P.; Binder, S.; Brennicke, A.; Eubel, H.; Fernie, A. R.; Finkemeier, I.; Klodmann, J.; König, A.-C.; Kühn, K.; Meyer, E. H. et al.; Obata, T.; Schwarzländer, M.; Takenaka, M.; Zehrmann, A.: The life of plant mitochondrial complex I. Mitochondrion 19, Part B (0), pp. 295 - 313 (2014)
4.
Journal Article
Scotti, N.; Sannino, L.; Idoine, A.; Hamman, P.; De Stradis, A.; Giorio, P.; Maréchal-Drouard, L.; Bock, R.; Cardi, T.: The HIV-1 Pr55gag polyprotein binds to plastidial membranes and leads to severe impairment of chloroplast biogenesis and seedling lethality in transplastomic tobacco plants. Transgenic Research, pp. 1 - 13 (2014)
5.
Journal Article
Abdelnur, P. V.; Caldana, C.; Martins, M. C. M.: Metabolomics applied in bioenergy. Chemical and Biological Technologies in Agriculture 1 (1), 22 (2014)
6.
Journal Article
Krishnamoorthy, P.; Sanchez-Rodriguez, C.; Heilmann, I.; Persson, S.: Regulatory roles of phosphoinositides in membrane trafficking and their potential impact on cell-wall synthesis and re-modelling. Annals of Botany 114 (6 - SI), pp. 1049 - 1057 (2014)
7.
Journal Article
Bolger, A. M.; Scossa, F.; Bolger, A. M.; Lanz, C.; Maumus, F.; Tohge, T.; Quesneville, H.; Alseekh, S.; Sorensen, I.; Lichtenstein, G. et al.; Fich, E. A.; Conte, M.; Keller, H.; Schneeberger, K.; Schwacke, R.; Ofner, I.; Vrebalov, J.; Xu, Y.; Osorio, S.; Aflitos, S. A.; Schijlen, E.; Jimenez-Gomez, J. M.; Ryngajllo, M.; Kimura, S.; Kumar, R.; Koenig, D.; Headland, L. R.; Maloof, J. N.; Sinha, N.; van Ham, R. C. H. J.; Lankhorst, R. K.; Mao, L.; Vogel, A.; Arsova, B.; Panstruga, R.; Fei, Z.; Rose, J. K. C.; Zamir, D.; Carrari, F. F.; Giovannoni, J. J.; Weigel, D.; Usadel, B.; Fernie, A. R.: The genome of the stress-tolerant wild tomato species Solanum pennellii. Nature Genetics 46 (9), pp. 1034 - 1038 (2014)
8.
Journal Article
Schwahn, K.; de Souza, L. P.; Fernie, A. R.; Tohge, T.: Metabolomics-assisted refinement of the pathways of steroidal glycoalkaloid biosynthesis in the tomato clade. Journal of Integrative Plant Biology 56 (9), pp. 864 - 875 (2014)
9.
Journal Article
Thalhammer, A.; Bryant, G.; Sulpice, R.; Hincha, D. K.: Disordered Cold Regulated15 Proteins Protect Chloroplast Membranes during Freezing through Binding and Folding, But Do Not Stabilize Chloroplast Enzymes in Vivo. Plant Physiology 166 (1), pp. 190 - 201 (2014)
10.
Journal Article
Tohge, T.; Alseekh, S.; Fernie, A. R.: On the regulation and function of secondary metabolism during fruit development and ripening. Journal of Experimental Botany 65 (16), pp. 4599 - 4611 (2014)
11.
Journal Article
Arnold, A.; Nikoloski, Z.: Bottom-up Metabolic Reconstruction of Arabidopsis and Its Application to Determining the Metabolic Costs of Enzyme Production. Plant Physiology 165 (3), pp. 1380 - 1391 (2014)
12.
Journal Article
Balazadeh, S.; Schildhauer, J.; Araujo, W. L.; Munne-Bosch, S.; Fernie, A. R.; Proost, S.; Humbeck, K.; Mueller-Roeber, B.: Reversal of senescence by N resupply to N-starved Arabidopsis thaliana: transcriptomic and metabolomic consequences. Journal of Experimental Botany 65 (14), pp. 3975 - 3992 (2014)
13.
Journal Article
Ewald, R.; Hoffmann, C.; Florian, A.; Neuhaus, E.; Fernie, A. R.; Bauwe, H.: Lipoate-Protein Ligase and Octanoyltransferase Are Essential for Protein Lipoylation in Mitochondria of Arabidopsis1[W][OPEN]. Plant Physiology 165 (3), pp. 978 - 990 (2014)
14.
Journal Article
Fukushima, A.; Kusano, M.; Mejia, R. F.; Iwasa, M.; Kobayashi, M.; Hayashi, N.; Watanabe-Takahashi, A.; Narisawa, T.; Tohge, T.; Hur, M. et al.; Wurtele, E. S.; Nikolau, B. J.; Saito, K.: Metabolomic Characterization of Knockout Mutants in Arabidopsis: Development of a Metabolite Profiling Database for Knockout Mutants in Arabidopsis. Plant Physiology 165 (3), pp. 948 - 961 (2014)
15.
Journal Article
Hauck, O. K.; Scharnberg, J.; Escobar, N. M.; Wanner, G.; Giavalisco, P.; Witte, C.-P.: Uric Acid Accumulation in an Arabidopsis Urate Oxidase Mutant Impairs Seedling Establishment by Blocking Peroxisome Maintenance. Plant Cell 26 (7), pp. 3090 - 3100 (2014)
16.
Journal Article
Sauvage, C.; Segura, V.; Bauchet, G.; Stevens, R.; Do, P. T.; Nikoloski, Z.; Fernie, A. R.; Causse, M.: Genome-Wide Association in Tomato Reveals 44 Candidate Loci for Fruit Metabolic Traits. Plant Physiology 165 (3), pp. 1120 - 1132 (2014)
17.
Journal Article
Sprenger, H.; Koehl, K. I.; Rudack, K.; Seddig, S.; Peters, R.: Verbesserung der Trockentoleranz bei Stärkekartoffeln. Kartoffelbau 56 (7), pp. 23 - 27 (2014)
18.
Journal Article
Tiller, N.; Bock, R.: The Translational Apparatus of Plastids and Its Role in Plant Development. Molecular Plant 7 (7), pp. 1105 - 1120 (2014)
19.
Journal Article
Todesco, M.; Kim, S.-T.; Chae, E.; Bomblies, K.; Zaidem, M.; Smith, L. M.; Weigel, D.; Laitinen, R.: Activation of the Arabidopsis thaliana Immune System by Combinations of Common ACD6 Alleles. PLoS Genetics 10 (7), e1004459 (2014)
20.
Journal Article
Wu, X. N.; Sklodowski, K.; Encke, B.; Schulze, W. X.: A Kinase-Phosphatase Signaling Module with BSK8 and BSL2 Involved in Regulation of Sucrose-Phosphate Synthase. Journal of Proteome Research 13 (7), pp. 3397 - 3409 (2014)
21.
Journal Article
Nunes-Nesi, A.; Brito, D. S.; Inostroza-Blancheteau, C.; Fernie, A. R.; Araujo, W. L.: The complex role of mitochondrial metabolism in plant aluminum resistance. Trends in Plant Science 19 (6), pp. 399 - 407 (2014)
22.
Journal Article
Sampathkumar, A.; Yan, A.; Krupinski, P.; Meyerowitz, E. M.: Physical Forces Regulate Plant Development and Morphogenesis. Current Biology 24 (10), pp. R475 - R483 (2014)
23.
Journal Article
Bellucci, E.; Bitocchi, E.; Ferrarini, A.; Benazzo, A.; Biagetti, E.; Klie, S.; Minio, A.; Rau, D.; Rodriguez, M.; Panziera, A. et al.; Venturini, L.; Attene, G.; Albertini, E.; Jackson, S. A.; Nanni, L.; Fernie, A. R.; Nikoloski, Z.; Bertorelle, G.; Delledonne, M.; Papa, R.: Decreased Nucleotide and Expression Diversity and Modified Coexpression Patterns Characterize Domestication in the Common Bean. The Plant Cell 26 (5), pp. 1901 - 1912 (2014)
24.
Journal Article
Do, P. T.; Drechsel, O.; Heyer, A. G.; Hincha, D. K.; Zuther, E.: Changes in free polyamine levels, expression of polyamine biosynthesis genes, and performance of rice cultivars under salt stress: a comparison with responses to drought. Frontiers in Plant Science 5, p. 182 - 182 (2014)
25.
Journal Article
Ramundo, S.; Casero, D.; Mühlhaus, T.; Hemme, D.; Sommer, F.; Crevecoeur, M.; Rahire, M.; Schroda, M.; Rusch, J.; Goodenough, U. et al.; Pellegrini, M.; Esther Perez-Perez, M.; Luis Crespo, J.; Schaad, O.; Civic, N.; Rochaix, J. D.: Conditional Depletion of the Chlamydomonas Chloroplast ClpP Protease Activates Nuclear Genes Involved in Autophagy and Plastid Protein Quality Control. Plant Cell 26 (5), pp. 2201 - 2222 (2014)
26.
Journal Article
Rincent, R.; Moreau, L.; Monod, H.; Kuhn, E.; Melchinger, A. E.; Malvar, R. A.; Moreno-Gonzalez, J.; Nicolas, S.; Madur, D.; Combes, V. et al.; Dumas, F.; Altmann, T.; Brunel, D.; Ouzunova, M.; Flament, P.; Dubreuil, P.; Charcosset, A.; Mary-Huard, T.: Recovering Power in Association Mapping Panels with Variable Levels of Linkage Disequilibrium. Genetics 197 (1), pp. 375 - 387 (2014)
27.
Journal Article
Wallstrom, S. V.; Florez-Sarasa, I.; Araujo, W. L.; Escobar, M. A.; Geisler, D. A.; Aidemark, M.; Lager, I.; Fernie, A. R.; Ribas-Carbo, M.; Rasmusson, A. G.: Suppression of NDA-Type Alternative Mitochondrial NAD(P)H Dehydrogenases in Arabidopsis thaliana Modifies Growth and Metabolism, but not High Light Stimulation of Mitochondrial Electron Transport. Plant and Cell Physiology 55 (5), pp. 881 - 896 (2014)
28.
Journal Article
Bock, R.: Genetic engineering of the chloroplast: novel tools and new applications. Current Opinion in Biotechnology 26, pp. 7 - 13 (2014)
29.
Journal Article
Gupta, K. J.; Mur, L. A. J.; Brotman, Y.: Trichoderma asperelloides Suppresses Nitric Oxide Generation Elicited by Fusarium oxysporum in Arabidopsis Roots. Molecular Plant-Microbe Interactions 27 (4), pp. 307 - 314 (2014)
30.
Journal Article
Khrameeva, E. E.; Bozek, K.; He, L.; Yan, Z.; Jiang, X.; Wei, Y.; Tang, K.; Gelfand, M. S.; Prüfer, K.; Kelso, J. F. et al.; Pääbo, S.; Giavalisco, P.; Lachmann, M.; Khaitovich, P.: Neanderthal ancestry drives evolution of lipid catabolism in contemporary Europeans. Nature Communications 5, 3584 (2014)
31.
Journal Article
Martins, S. C. V.; Araújo, W. L.; Tohge, T.; Fernie, A. R.; DaMatta, F. M.: In High-Light-Acclimated Coffee Plants the Metabolic Machinery Is Adjusted to Avoid Oxidative Stress Rather than to Benefit from Extra Light Enhancement in Photosynthetic Yield. PLoS One 9 (4), e94862 (2014)
32.
Journal Article
Nawrot, R.; Zauber, H.; Schulze, W. X.: Global proteomic analysis of Chelidonium majus and Corydalis cava (Papaveraceae) extracts revealed similar defense-related protein compositions. Fitoterapia 94, pp. 77 - 87 (2014)
33.
Journal Article
Zhang, R.; Patena, W.; Armbruster, U.; Gang, S. S.; Blum, S. R.; Jonikas, M. C.: High-Throughput Genotyping of Green Algal Mutants Reveals Random Distribution of Mutagenic Insertion Sites and Endonucleolytic Cleavage of Transforming DNA. The Plant Cell 26 (4), pp. 1398 - 1409 (2014)
34.
Journal Article
Weits, D. A.; Giuntoli, B.; Kosmacz, M.; Parlanti, S.; Hubberten, H. M.; Riegler, H.; Hoefgen, R.; Perata, P.; van Dongen, J. T.; Licausi, F.: Plant cysteine oxidases control the oxygen-dependent branch of the N-end-rule pathway. Nature Communications 5, 3425 (2014)
35.
Journal Article
Pajoro, A.; Madrigal, P.; Muino, J. M.; Matus, J. T.; Jin, J.; Mecchia, M. A.; Debernardi, J. M.; Palatnik, J. F.; Balazadeh, S.; Arif, M. et al.; O'Maoileidigh, D. S.; Wellmer, F.; Krajewski, P.; Riechmann, J. L.; Angenent, G. C.; Kaufmann, K.: Dynamics of chromatin accessibility and gene regulation by MADS-domain transcription factors in flower development. Genome Biology 15 (3), p. R41 - R41 (2014)
36.
Journal Article
Kleessen, S.; Laitinen, R.; Fusari, C. M.; Antonio, C.; Sulpice, R.; Fernie, A. R.; Stitt, M.; Nikoloski, Z.: Metabolic efficiency underpins performance trade-offs in growth of Arabidopsis thaliana. Nature Communications 5, 3537 (2014)
37.
Journal Article
Szymanski, J.; Brotman, Y.; Willmitzer, L.; Cuadros-Inostroza, A. C.: Linking Gene Expression and Membrane Lipid Composition of Arabidopsis. The Plant Cell 26 (3), pp. 915 - 928 (2014)
38.
Journal Article
Schulz, P.; Jansseune, K.; Degenkolbe, T.; Meret, M.; Claeys, H.; Skirycz, A.; Teige, M.; Willmitzer, L.; Hannah, M. A.: Poly(ADP-Ribose)Polymerase Activity Controls Plant Growth by Promoting Leaf Cell Number. PLoS One 9 (2), e90322 (2014)
39.
Journal Article
Noor, E.; Bar-Even, A.; Flamholz, A.; Reznik, E.; Liebermeister, W.; Milo, R.: Pathway Thermodynamics Highlights Kinetic Obstacles in Central Metabolism. PLoS Computational Biology 10 (2), e1003483 (2014)
40.
Journal Article
Greiner, S.; Koehl, K. I.: Growing evening primroses (Oenothera). Frontiers in Plant Science 5, 38 (2014)
41.
Journal Article
Araujo, W. L.; Nunes-Nesi, A.; Fernie, A. R.: On the role of plant mitochondrial metabolism and its impact on photosynthesis in both optimal and sub-optimal growth conditions. Photosynthesis research 119 (1-2), pp. 141 - 156 (2014)
42.
Journal Article
Arnold, A.; Nikoloski, Z.: In search for an accurate model of the photosynthetic carbon metabolism. Mathematics and Computers in Simulation 96, pp. 171 - 194 (2014)
43.
Journal Article
Malinova, I.; Mahlow, S.; Alseekh, S.; Orawetz, T.; Fernie, A. R.; Baumann, O.; Steup, M.; Fettke, J.: Double Knockout Mutants of Arabidopsis Grown under Normal Conditions Reveal that the Plastidial Phosphorylase Isozyme Participates in Transitory Starch Metabolism. Plant Physiology 164 (2), pp. 907 - 921 (2014)
44.
Journal Article
Feher, K.; Lisec, J.; Römisch-Margl, L.; Selbig, J.; Gierl, A.; Piepho, H.-P.; Nikoloski, Z.; Willmitzer, L.: Deducing Hybrid Performance from Parental Metabolic Profiles of Young Primary Roots of Maize by Using a Multivariate Diallel Approach. PLoS ONE 9 (1), e85435 (2014)
45.
Journal Article
Allan, E.; Bossdorf, O.; Dormann, C. F.; Prati, D.; Gossnerd, M.; Tscharntke, T.; Blüthgen, N.; Bellach, M.; Birkhofer, K.; Boch, S. et al.; Böhm, S.; Börschig, C.; Chatzinotas, A.; Christ, S.; Daniel, R.; Diekötter, T.; Fischerm, C.; Friedl, T.; Glaser, K.; Hallmann, C.; Hodac, L.; Hölzel, N.; Jung, K.; Klein, A. M.; Klaus, V. H.; Kleinebecker, T.; Krauss, J.; Lange, M.; Morriss, E. K.; Müller, J.; Nacke, H.; Pašalic, E.; Rilligt, M. C.; Rothenwöhrer, C.; Schall, P.; Scherber, C.; Schulze, W. X.; Socher, S.; Steckel, J.; Steffan-Dewenter, I.; Türcke, M.; Weiner, C. N.; Werner, M.; Westphal, C.; Wolters, V.; Wubet, T.; Gockel, S.; Gorke, M.; Hemp, A.; Renner, S. C.; Schöning, I.; Pfeiffer, S.; König-Ries, B.; Buscot, F.; Linsenmair, K.-E.; Schulze, E. D.; Weisser, W. W.; Fischer, M.: Interannual variation in land-use intensity enhances grassland multidiversity. Proceedings of the National Academy of Sciences of the United States of America 111 (1), pp. 308 - 313 (2014)
46.
Journal Article
Allu, A. D.; Soja, A. M.; Wu, A.; Szymanski, J.; Balazadeh, S.: Salt stress and senescence: identification of cross-talk regulatory components. Journal of Experimental Botany 65 (14), pp. 3993 - 4008 (2014)
47.
Journal Article
Andriankaja, M. E.; Danisman, S.; Mignolet-Spruyt, L. F.; Claeys, H.; Kochanke, I.; Vermeersch, M.; De Milde, L.; De Bodt, S.; Storme, V.; Skirycz, A. et al.; Maurer, F.; Bauer, P.; Muhlenbock, P.; Van Breusegem, F.; Angenent, G. C.; Immink, R. G. H.; Inze, D.: Transcriptional coordination between leaf cell differentiation and chloroplast development established by TCP20 and the subgroup Ib bHLH transcription factors. Plant Molecular Biology 85 (3), pp. 233 - 245 (2014)
48.
Journal Article
Araujo, W. L.; Martins, A. O.; Fernie, A. R.; Tohge, T.: 2-Oxoglutarate: linking TCA cycle function with amino acid, glucosinolate, flavonoid, alkaloid, and gibberellin biosynthesis. Frontiers in Plant Science 5, p. 552 - 552 (2014)
49.
Journal Article
Araujo, W. L.; Tohge, T.; Nunes-Nesi, A.; Obata, T.; Fernie, A. R.: Analysis of Kinetic Labeling of Amino Acids and Organic Acids by GC-MS. Methods in molecular biology 1090, pp. 107 - 119 (2014)
50.
Journal Article
Arrivault, S.; Guenther, M.; Florian, A.; Encke, B.; Feil, R.; Vosloh, D.; Lunn, J. E.; Sulpice, R.; Fernie, A. R.; Stitt, M. et al.; Schulze, W. X.: Dissecting the Subcellular Compartmentation of Proteins and Metabolites in Arabidopsis Leaves Using Non-aqueous Fractionation. Molecular and Cellular Proteomics 13 (9), pp. 2246 - 2259 (2014)
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