Publications of the MPI

1.

Journal Article

Langary, D.; Küken, A.; Nikoloski, Z.: The unraveling of balanced complexes in metabolic networks. Scientific Reports 13 (1), 5712 (2023)

MPG.PuRe

DOI

2.

Journal Article

Tan, Q.W.; Lim, P.K.; Chen, Z.; Pasha, A.; Provart, N.; Arend, M.; Nikoloski, Z.; Mutwil, M.: Cross-stress gene expression atlas of Marchantia polymorpha reveals the hierarchy and regulatory principles of abiotic stress responses. Nature Communications 14 (1), 986 (2023)

MPG.PuRe

DOI

3.

Journal Article

Younis, I.Y.; Mohsen, E.; Ibrahim, R.M.; Fernie, A. R.; Alseekh, S.; Salem, M.A.: Non-targeted metabolomics and chemometrics for saffron (Crocus sativus L.) authentication and adulteration detection in relation to its anticholinesterase activity. Food Chemistry Advances 2, 100217 (2023)

MPG.PuRe

DOI

4.

Journal Article

Tedesco, S.; Irisarri, P.; Teixeira Santos, M.; Fevereiro, P.; Pina, A.; Kragler, F.: Early detection of grapevine graft incompatibility: Insights into translocated and virus-induced incompatibility. Scientia Horticulturae 318, 112087 (2023)

MPG.PuRe

DOI

5.

Journal Article

Alseekh, S.; Fernie, A. R.: Expanding our coverage: Strategies to detect a greater range of metabolites. Current Opinion in Plant Biology 73, 102335 (2023)

MPG.PuRe

DOI

6.

Journal Article

Avidan, O.; Moraes, T. A.; Mengin, V.; Feil, R.; Rolland, F.; Stitt, M.; Lunn, J. E.: In vivo protein kinase activity of SnRK1 fluctuates in Arabidopsis rosettes during light-dark cycles. Plant Physiology 192, pp. 387 - 408 (2023)

MPG.PuRe

DOI

7.

Journal Article

Durand, M.; Brehaut, V.; Clement, G.; Kelemen, Z.; Macé, J.; Feil, R.; Duville, G.; Launay-Avon, A.; Paysant-Le Roux, C.; Lunn, J. E. et al.; Roudier, F.; Krapp, A.: The Arabidopsis transcription factor NLP2 regulates early nitrate responses and integrates nitrate assimilation with energy and carbon skeleton supply. The Plant Cell (5), pp. 1429 - 1454 (2023)

MPG.PuRe

DOI

8.

Journal Article

Jia, Z.-C.; Das, D.; Zhang, Y.; Fernie, A. R.; Liu, Y.-G.; Chen, M.; Zhang, J.: Plant serine/arginine-rich proteins: versatile players in RNA processing. Planta 257 (6), 109 (2023)

MPG.PuRe

DOI

9.

Journal Article

Martinez Rivas, F.J.; Blanco-Portales, R.; Pérez-Serratosa, M.; Ric-Varas, P.; Sánchez, V. G.; Puche, L. M.; Moyano, L.; Mercado, J. Á.; Alseekh, S.; Caballero, J. L. et al.; Fernie, A. R.; Muñoz-Blanco, J.; Molina-Hidalgo, F. J.: FaMYB123 interacts with FabHLH3 to regulate the late steps of anthocyanin and flavonol accumulation during ripening. The Plant Journal 114 (3), pp. 683 - 698 (2023)

MPG.PuRe

DOI

10.

Journal Article

Moghe, G.; Kruse, L. H.; Petersen, M.; Scossa, F.; Fernie, A. R.; Gaquerel, E.; D'Auria, J. C.: BAHD Company: The Ever-Expanding Roles of the BAHD Acyltransferase Gene Family in Plants. Annual Review of Plant Biology 74 (2023)

MPG.PuRe

DOI

Full

11.

Journal Article

Wijesingha Ahchige, M.; Fernie, A. R.; Alseekh, S.: PANTOTHENATE KINASE4, LOSS OF GDU2, and TRANSPOSON PROTEIN1 affect the canalization of tomato fruit metabolism. Plant Physiology 192 (1), kiad093, pp. 442 - 468 (2023)

MPG.PuRe

DOI

12.

Journal Article

Zemach, I.; Alseekh, S.; Tadmor-Levi, R.; Fisher, J.; Torgeman, S.; Trigerman, S.; Nauen, J.; Hayut, S. F.; Mann, V.; Rochsar, E. et al.; Finkers, R.; Wendenburg, R.; Osorio, S.; Bergmann, S.; Lunn, J. E.; Semel, Y.; Hirschberg, J.; Fernie, A. R.; Zamir, D.: Multi-year field trials provide a massive repository of trait data on a highly diverse population of tomato and uncover novel determinants of tomato productivity. The Plant Journal (2023)

MPG.PuRe

DOI

13.

Journal Article

Neri-Silva, R.; Monteiro-Batista, R. D.; Fonseca-Pereira, P. D.; Nunes, M. D.; Viana-Silva, A. L.; Palhares Ribeiro, T.; Pérez-Díaz, J. L.; Medeiros, D.B.; Araújo, W. L.; Fernie, A. R. et al.; Nunes-Nesi, A.: On the Significance of the ADNT1 Carrier in Arabidopsis thaliana under Waterlogging Conditions. Biomolecules 13 (5), 731 (2023)

MPG.PuRe

DOI

14.

Journal Article

Apodiakou, A.; Hoefgen, R.: New insights into the regulation of plant metabolism by O-acetyl-serine: sulfate and beyond. Journal of Experimental Botany, erad124 (2023)

MPG.PuRe

DOI

15.

Journal Article

Bulut, M.; Alseekh, S.; Fernie, A. R.: Natural variation of respiration-related traits in plants. Plant Physiology 191 (4), pp. 2120 - 2132 (2023)

MPG.PuRe

DOI

16.

Journal Article

Chen, Y.; Wang, Y.; Liang, X.; Zhang, Y.; Fernie, A. R.: Mass spectrometric exploration of phytohormone profiles and signaling networks. Trends in Plant Science 28 (4), pp. 399 - 414 (2023)

MPG.PuRe

DOI

17.

Journal Article

Gago, J.; Nadal, M.; Clemente-Moreno, M. J.; Figueroa, C. M.; Medeiros, D.B.; Cubo-Ribas, N.; Cavieres, L. A.; Gulías, J.; Fernie, A. R.; Flexas, J. et al.; Bravo, L. A.: Nutrient availability regulates Deschampsia antarctica photosynthetic and stress tolerance performance in Antarctica. Journal of Experimental Botany 74, pp. 2620 - 2637 (2023)

MPG.PuRe

DOI

18.

Journal Article

Ghandour, R.; Gao, Y.; Laskowski, J.; Barahimipour, R.; Ruf, S.; Bock, R.; Zoschke, R.: Transgene insertion into the plastid genome alters expression of adjacent native chloroplast genes at the transcriptional and translational levels. Plant Biotechnology Journal 21 (4), pp. 711 - 725 (2023)

MPG.PuRe

DOI

19.

Journal Article

He, Y.; Zhang, K.; Li, S.; Lu, X.; Zhao, H.; Guan, C.; Huang, X.; Shi, Y.; Kang, Z.; Fan, Y. et al.; Li, W.; Chen, C.; Li, G.; Long, O.; Chen, Y.; Hu, M.; Cheng, J.; Xu, B.; Chapman, M. A.; Georgiev, M. I.; Fernie, A. R.; Zhou, M.: Multi-omics analysis reveals the molecular mechanisms underlying virulence in Rhizoctonia and jasmonic acid–mediated resistance in Tartary buckwheat (Fagopyrum tataricum). The Plant Cell, koad118 (2023)

MPG.PuRe

DOI

20.

Journal Article

Hong, J.; Rosental, L.; Xu, Y.; Xu, D.; Orf, I.; Wang, W.; Hu, Z.; Su, S.; Bai, S.; Ashraf, M. et al.; Hu, C.; Zhang, C.; Li, Z.; Xu, J.; Liu, Q.; Zhang, H.; Zhang, F.; Luo, Z.; Chen, M.; Chen, X.; Betts, N.; Fernie, A. R.; Liang, W.; Chen, G.; Brotman, Y.; Zhang, D.; Shi, J.: Genetic architecture of seed glycerolipids in Asian cultivated rice. Plant, Cell and Environment 46 (4 - Special Issue: Rice 2050), pp. 1278 - 1294 (2023)

MPG.PuRe

DOI

21.

Journal Article

Lohmann, J.; de Luxán-Hernández, C.; Gao, Y.; Zoschke, R.; Weingartner, M.: Arabidopsis Translation factor eEF1Bγ impacts plant development and associates with heat-induced cytoplasmic foci. Journal of Experimental Botany 74 (8), pp. 2585 - 2602 (2023)

MPG.PuRe

DOI

22.

Journal Article

Machens, F.; Ran, G.; Ruehmkorff, C.; Meyer auf der Heyde, J.; Mueller-Roeber, B.; Hochrein, L.: PhiReX 2.0: A Programmable and Red Light-Regulated CRISPR-dCas9 System for the Activation of Endogenous Genes in Saccharomyces cerevisiae. ACS Synthetic Biology 12 (4), pp. 1046 - 1057 (2023)

MPG.PuRe

DOI

23.

Journal Article

Röhricht, H.; Przybyla-Toscano, J.; Forner, J.; Boussardon, C.; Keech, O.; Rouhier, N.; Meyer, E. H.: Mitochondrial ferredoxin-like is essential for forming complex I-containing supercomplexes in Arabidopsis. Plant Physiology 191 (4), pp. 2170 - 2184 (2023)

MPG.PuRe

DOI

24.

Journal Article

Valifard, M.; Fernie, A. R.; Kitashova, A.; Nägele, T.; Schröder, R.; Meinert, M.; Pommerrenig, B.; Mehner-Breitfeld, D.; Witte, C.-P.; Brüser, T. et al.; Keller, I.; Neuhaus, H. E.: The novel chloroplast glucose transporter pGlcT2 affects adaptation to extended light periods. The Journal of Biological Chemistry, 104741 (2023)

MPG.PuRe

DOI

25.

Journal Article

Wendering, P.; Nikoloski, Z.: Toward mechanistic modeling and rational engineering of plant respiration. Plant Physiology 191 (4), pp. 2150 - 2166 (2023)

MPG.PuRe

DOI

26.

Journal Article

Mutwil, M.; Fernie, A. R.: Ancestral Genome Reconstruction for Studies of the Green Lineage. Molecular Plant 16 (4), pp. 657 - 659 (2023)

MPG.PuRe

DOI

27.

Journal Article

Aghajanzadeh, T.A.; Watanabe, M.; Tohge, T.; Hawkesford, M.J.; Fernie, A. R.; Hoefgen, R.; Elzenga, J.T.M.; De Kok, L.J.: Necrotrophic fungal infection affects indolic glucosinolate metabolism in Brassica rapa. Acta Physiologiae Plantarum 45 (5), 64 (2023)

MPG.PuRe

DOI

28.

Journal Article

Aharoni, A.; Goodacre, R.; Fernie, A. R.: Plant and microbial sciences as key drivers in the development of metabolomics research. Proceedings of the National Academy of Sciences of the United States of America 120 (12), e2217383120 (2023)

MPG.PuRe

DOI

29.

Journal Article

Bruinsma, L.; Wenk, S.; Claassens, N.J.; Martins dos Santos, V.A.P.: Paving the way for synthetic C1. Metabolic Engineering 76, pp. 215 - 224 (2023)

MPG.PuRe

DOI

30.

Journal Article

Campana, P.; Nikoloski, Z.: Self- and cross-attention accurately predicts metabolite–protein interactions. NAR: genomics and bioinformatics 5 (1), lqad008 (2023)

MPG.PuRe

DOI

31.

Journal Article

Chen, J.; Zhang, Y.; Yin, H.; Liu, W.; Hu, X.; Li, D.; Lan, C.; Gao, L.; He, Z.; Cui, F. et al.; Fernie, A. R.; Chen, W.: The pathway of melatonin biosynthesis in common wheat (Triticum aestivum). Journal of Pineal Research 74 (2), e12841 (2023)

MPG.PuRe

DOI

32.

Journal Article

Dahmani, I.; Qin, K.; Zhang, Y.; Fernie, A. R.: The Formation and Function of Plant Metabolons. The Plant Journal (2023)

MPG.PuRe

DOI

33.

Journal Article

Fan, R.; Zhu, C.; Qiu, D.; Mao, G.; Mueller-Roeber, B.; Zeng, J.: Integrated transcriptomic and metabolomic analyses reveal key genes controlling flavonoid biosynthesis in Citrus grandis ‘Tomentosa’ fruits. Plant Physiology and Biochemistry 196, pp. 210 - 221 (2023)

MPG.PuRe

DOI

34.

Journal Article

Geng, R.; Pang, X.; Li, X.; Shi, S.; Hedtke, B.; Grimm, B.; Bock, R.; Huang, J.; Zhou, W.: PROGRAMMED CELL DEATH8 interacts with tetrapyrrole biosynthesis enzymes and ClpC1 to maintain homeostasis of tetrapyrrole metabolites in Arabidopsis. New Phytologist (2023)

MPG.PuRe

DOI

35.

Journal Article

López, C. M.; Alseekh, S.; Torralbo, F.; Martinez Rivas, F.J.; Fernie, A. R.; Amil-Ruiz, F.; Alamillo, J. M.: Transcriptomic and metabolomic analysis reveals that symbiotic nitrogen fixation enhances drought resistance in common bean. Journal of Experimental Botany, erad083 (2023)

MPG.PuRe

DOI

36.

Journal Article

Luzarowska, U.; Ruß, A.-K.; Joubès, J.; Batsale, M.; Szymański, J.; Thirumalaikumar, V. P.; Luzarowski, M.; Wu, S.; Zhu, F.; Endres, N. et al.; Khedhayir, S.; Schumacher, J.; Jasinska, W.; Xu, K.; Cordoba, S. M. C.; Weil, S.; Skirycz, A.; Fernie, A. R.; Li-Beisson, Y.; Fusari, C. M.; Brotman, Y.: Hello darkness, my old friend: 3-KETOACYL-COENZYME A SYNTHASE4 is a branch point in the regulation of triacylglycerol synthesis in Arabidopsis thaliana. The Plant Cell, koad059 (2023)

MPG.PuRe

DOI

37.

Journal Article

Martínez-Peña, R.; Vergara-Díaz, O.; Schlereth, A.; Höhne, M.; Morcuende, R.; Nieto-Taladriz, M.T.; Araus, J.L.; Aparicio, N.; Vicente, R.: Analysis of durum wheat photosynthetic organs during grain filling reveals the ear as a water stress-tolerant organ and the peduncle as the largest pool of primary metabolites. Planta 257 (4), 81 (2023)

MPG.PuRe

DOI

38.

Journal Article

Novaković, L.; Yakubov, G.E.; Ma, Y.; Bacic, A.; Blank, K.G.; Sampathkumar, A.; Johnson, K.L.: DEFECTIVE KERNEL1 regulates cellulose synthesis and affects primary cell wall mechanics. Frontiers in Plant Science 14, 1150202 (2023)

MPG.PuRe

DOI

39.

Journal Article

Schada von Borzyskowski, L.; Schulz-Mirbach, H.; Troncoso Castellanos, M.; Severi, F.; Gomez Coronado, P. A.; Paczia, N.; Glatter, T.; Bar-Even, A.; Lindner, S. N.; Erb, T.J.: Implementation of the β-hydroxyaspartate cycle increases growth performance of Pseudomonas putida on the PET monomer ethylene glycol. Metabolic Engineering 76, pp. 97 - 109 (2023)

MPG.PuRe

DOI

40.

Journal Article

Sheng, O.; Yin, Z.; Huang, W.; Chen, M.; Du, M.; Kong, Q.; Fernie, A. R.; Yi, G.; Yan, S.: Metabolic profiling reveals genotype-associated alterations in carotenoid content during banana postharvest ripening. Food Chemistry 403, 134380 (2023)

MPG.PuRe

DOI

41.

Journal Article

Soltani, F.; Nouri, M.; Shokrpour, M.; Alabboud, M.; Erban, A.; Fehrle, I.; Kopka, J.: Breeding of Persian melon: Purpose to increase volatile compounds in melon (Cucumis melo) intergroup F1 cross population. Plant Breeding (2023)

MPG.PuRe

DOI

42.

Journal Article

Strand, D.; Karcher, D.; Ruf, S.; Schadach, A.; Schöttler, M. A.; Sandoval-Ibanez, O.; Hall, D.; Kramer, D. M.; Bock, R.: Characterization of mutants deficient in N-terminal phosphorylation of the chloroplast ATP synthase subunit β. Plant Physiology 191 (3), pp. 1818 - 1835 (2023)

MPG.PuRe

DOI

43.

Journal Article

Wendering, P.; Arend, M.; Razaghi-Moghadam, Z.; Nikoloski, Z.: Data integration across conditions improves turnover number estimates and metabolic predictions. Nature Communications 14, 1485 (2023)

MPG.PuRe

DOI

44.

Journal Article

Xue, J.-Y.; Li, Z.; Hu, S.-Y.; Kao, S.-M.; Zhao, T.; Wang, J.-Y.; Wang, Y.; Chen, M.; Qiu, Y.; Fan, H.-Y. et al.; Liu, Y.; Shao, Z.-Q.; Van de Peer, Y.: The Saururus chinensis genome provides insights into the evolution of pollination strategies and herbaceousness in magnoliids. The Plant Journal 113 (5), pp. 1021 - 1034 (2023)

MPG.PuRe

DOI

45.

Journal Article

Yang, L.; Zhou, Y.; Wang, S.; Xu, Y.; Ostendorp, S.; Tomkins, M.; Kehr, J.; Morris, R. J.; Kragler, F.: Non-cell-autonomous HSC70.1 chaperone displays homeostatic feed-back regulation by binding its own mRNA. New Phytologist 237 (6), pp. 2404 - 2421 (2023)

MPG.PuRe

DOI

46.

Journal Article

Yokoyama, R.: EngineeRING the gear of ATP synthase: a way to address complexity and flexibility of photosynthesis. Plant Physiology (2023)

MPG.PuRe

DOI

47.

Journal Article

Zhang, Q.; Shi, Y.; Hu, H.; Shi, Y.; Tang, D.; Ruan, J.; Fernie, A. R.; Liu, M.-Y.: Magnesium promotes tea plant growth via enhanced glutamine synthetase-mediated nitrogen assimilation. Plant Physiology, kiad143 (2023)

MPG.PuRe

DOI

48.

Journal Article

Zhang, Y.; Chen, M.; Liu, T.; Qin, K.; Fernie, A. R.: Investigating the dynamics of protein-protein interactions in plants. The Plant Journal (2023)

MPG.PuRe

DOI

49.

Journal Article

Kleinschmidt, D.; Forner, J.: Plant genetic engineering makes treasure from trash. The Science Breaker 9 (1) (2023)

MPG.PuRe

DOI

50.

Journal Article

Shi, Y.; Zhang, Y.; Sun, Y.; Xie, Z.; Luo, Y.; Long, Q.; Feng, J.; Liu, X.; Wang, B.; He, D. et al.; Ren, J.; Guo, P.; Xing, J.; He, L.; Fernie, A. R.; Chen, W.; Liu, X.; Luo, Y.; Jin, C.; Luo, J.: Natural variations of OsAUX5, a target gene of OsWRKY78, control the neutral essential amino acid content in rice grains. Molecular Plant 16 (2), pp. 322 - 336 (2023)

MPG.PuRe

DOI

Publications of the institute

Journal Article (91)