Publications of the MPI

1.

Journal Article

Tohge, T.; Fernie, A. R.: Co-expression and co-responses: within and beyond transcription. Frontiers in Plant Science 3, 248 (2012)

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2.

Journal Article

Alkatib, S.; Scharff, L. B.; Rogalski, M.; Fleischmann, T. T.; Matthes, A.; Seeger, S.; Schöttler, M. A.; Ruf, S.; Bock, R.: The Contributions of Wobbling and Superwobbling to the Reading of the Genetic Code. PLoS Genetics 8 (11), e1003076 (2012)

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3.

Journal Article

Schmollinger, S.; Strenkert, D.; Offeddu, V.; Nordhues, A.; Sommer, F.; Schroda, M.: A Protocol for the Identification of Protein-protein Interactions Based on 15N Metabolic Labeling, Immunoprecipitation, Quantitative Mass Spectrometry and Affinity Modulation. Journal of Visualized Experiments: JoVE (67), 4083 (2012)

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4.

Journal Article

Bar-Even, A.; Flamholz, A.; Noor, E.; Milo, R.: Thermodynamic constraints shape the structure of carbon fixation pathways. Biochimica et Biophysica Acta-Bioenergetics 1817 (9), pp. 1646 - 1659 (2012)

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5.

Journal Article

Usadel, B.; Schwacke, R.; Nagel, A.; Kersten, B.: GabiPD – The GABI Primary Database integrates plant proteomic data with gene-centric information. Frontiers in Plant Science 3, 154 (2012)

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6.

Journal Article

Henrichs, S.; Wang, B.; Fukao, Y.; Zhu, J.; Charrier, L.; Bailly, A.; Oehring, S. C.; Linnert, M.; Weiwad, M.; Endler, A. et al.; Nanni, P.; Pollmann, S.; Mancuso, S.; Schulz, A.; Geisler, M.: Regulation of ABCB1/PGP1-catalysed auxin transport by linker phosphorylation. The EMBO Journal 31 (13), pp. 2965 - 2980 (2012)

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7.

Journal Article

Bar-Even, A.; Flamholz, A.; Noor, E.; Milo, R.: Rethinking glycolysis: on the biochemical logic of metabolic pathways. Nature Chemical Biology 8 (6), pp. 509 - 517 (2012)

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8.

Journal Article

Figueiredo, D.D.; Barros, P. M.; Cordeiro, A. M.; Serra, T. S.; Lourenço, T.; Chander, S.; Oliveira, M. M.; Saibo, N. J. M.: Seven zinc-finger transcription factors are novel regulators of the stress responsive gene OsDREB1B. Journal of Experimental Botany 63 (10), pp. 3643 - 3656 (2012)

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9.

Journal Article

Meyer, E. H.: Proteomic Investigations of Complex I Composition: How to Define a Subunit? Frontiers in plant science 3, 106 (2012)

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10.

Journal Article

Gutjahr, C.; Radovanovic, D.; Geoffroy, J.; Zhang, Q.; Siegler, H.; Chiapello, M.; Casieri, L.; An, K.; An, G.; Guiderdoni, E. et al.; Kumar, C.; Sundaresan, V.; Harrison, M.; Paszkowski, U.: The half-size ABC transporters STR1 and STR2 are indispensable for mycorrhizal arbuscule formation in rice. The Plant Journal 69 (5), pp. 906 - 920 (2012)

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11.

Journal Article

Qi, Y.; Armbruster, U.; Schmitz-Linneweber, C.; Delannoy, E.; de Longevialle, A. F.; Ruehle, T.; Small, I.; Jahns, P.; Leister, D.: Arabidopsis CSP41 proteins form multimeric complexes that bind and stabilize distinct plastid transcripts. Journal of Experimental Botany 63 (3), pp. 1251 - 1270 (2012)

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12.

Journal Article

Adi, M.; Jens, P.; Brotman, Y.; Mikhail, K.; Iris, S.; Henryk, C.; Rena, G.: Stress Responses to Tomato Yellow Leaf Curl Virus (TYLCV) Infection of Resistant and Susceptible Tomato Plants are Different. Metabolomics (S1), 006 (2012)

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13.

Journal Article

Ahmadabadi, M.; Bock, R.: Plastid division and morphology in the genus Peperomia. Biologia Plantarum 56 (2), pp. 301 - 306 (2012)

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14.

Journal Article

Albus, C. A.; Salinas, A.; Czarnecki, O.; Kahlau, S.; Rothbart, M.; Thiele, W.; Lein, W.; Bock, R.; Grimm, B.; Schöttler, M. A.: LCAA, a Novel Factor Required for Magnesium Protoporphyrin Monomethylester Cyclase Accumulation and Feedback Control of Aminolevulinic Acid Biosynthesis in Tobacco. Plant Physiology 160 (4), pp. 1923 - 1939 (2012)

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15.

Journal Article

Alejandro, S.; Lee, Y.; Tohge, T.; Sudre, D.; Osorio, S.; Park, J.; Bovet, L.; Lee, Y.; Geldner, N.; Fernie, A. R. et al.; Martinoia, E.: AtABCG29 Is a Monolignol Transporter Involved in Lignin Biosynthesis. Current Biology 22 (13), pp. 1207 - 1212 (2012)

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16.

Journal Article

Alkatib, S.; Fleischmann, T. T.; Scharff, L. B.; Bock, R.: Evolutionary constraints on the plastid tRNA set decoding methionine and isoleucine. Nucleic Acids Research 40 (14), pp. 6713 - 6724 (2012)

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17.

Journal Article

Amid, A.; Lytovchenko, A.; Fernie, A. R.; Warren, G.; Thorlby, G. J.: The sensitive to freezing3 mutation of Arabidopsis thaliana is a cold-sensitive allele of homomeric acetyl-CoA carboxylase that results in cold-induced cuticle deficiencies. Journal of Experimental Botany 63 (14), pp. 5289 - 5299 (2012)

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18.

Journal Article

Andorf, S.; Meyer, R. C.; Selbig, J.; Altmann, T.; Repsilber, D.: Integration of a Systems Biological Network Analysis and QTL Results for Biomass Heterosis in Arabidopsis thaliana. PLoS One 7 (11), p. e49951 (2012)

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19.

Journal Article

Andriankaja, M.; Dhondt, S.; De Bodt, S.; Vanhaeren, H.; Coppens, F.; De Milde, L.; Muehlenbock, P.; Skirycz, A.; Gonzalez, N.; Beemster, G. T. S. et al.; Inze, D.: Exit from Proliferation during Leaf Development in Arabidopsis thaliana: A Not-So-Gradual Process. Developmental Cell 22 (1), pp. 64 - 78 (2012)

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20.

Journal Article

Anetzberger, C.; Reiger, M.; Fekete, A.; Schell, U.; Stambrau, N.; Plener, L.; Kopka, J.; Schmitt-Kopplin, P.; Hilbi, H.; Jung, K.: Autoinducers act as biological timers in Vibrio harveyi. PLoS One 7 (10), p. e48310 (2012)

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21.

Journal Article

Araujo, W. L.; Fernie, A. R.: Systems biology of gibberellin induced plant cell growth. Frontiers in Plant Science 3, p. 173 (2012)

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22.

Journal Article

Araujo, W. L.; Nunes-Nesi, A.; Nikoloski, Z.; Sweetlove, L. J.; Fernie, A. R.: Metabolic control and regulation of the tricarboxylic acid cycle in photosynthetic and heterotrophic plant tissues. Plant, Cell and Environment 35 (1), pp. 1 - 21 (2012)

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23.

Journal Article

Araujo, W. L.; Tohge, T.; Nunes-Nesi, A.; Daloso, D. M.; Nimick, M.; Krahnert, I.; Bunik, V. I.; Moorhead, G. B.; Fernie, A. R.: Phosphonate analogs of 2-oxoglutarate perturb metabolism and gene expression in illuminated Arabidopsis leaves. Frontiers in plant science 3, p. 114 (2012)

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24.

Journal Article

Araujo, W. L.; Tohge, T.; Osorio, S.; Lohse, M.; Balbo, I.; Krahnert, I.; Sienkiewicz-Porzucek, A.; Usadel, B.; Nunes-Nesi, A.; Fernie, A. R.: Antisense Inhibition of the 2-Oxoglutarate Dehydrogenase Complex in Tomato Demonstrates Its Importance for Plant Respiration and during Leaf Senescence and Fruit Maturation. The Plant Cell 24 (6), pp. 2328 - 2351 (2012)

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25.

Journal Article

Arsova, B.; Schulze, W. X.: Current status of the plant phosphorylation site database PhosPhAt and its use as a resource for molecular plant physiology. Frontiers in plant science 3, p. 132 (2012)

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26.

Journal Article

Arsova, B.; Zauber, H.; Schulze, W. X.: Precision, proteome coverage, and dynamic range of Arabidopsis proteome profiling using (15)N metabolic labeling and label-free approaches. Molecular & cellular proteomics 11 (9), pp. 619 - 628 (2012)

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27.

Journal Article

Baerenfaller, K.; Massonnet, C.; Walsh, S.; Baginsky, S.; Buhlmann, P.; Hennig, L.; Hirsch-Hoffmann, M.; Howell, K. A.; Kahlau, S.; Radziejwoski, A. et al.; Russenberger, D.; Rutishauser, D.; Small, I.; Stekhoven, D.; Sulpice, R.; Svozil, J.; Wuyts, N.; Stitt, M.; Hilson, P.; Granier, C.; Gruissem, W.: Systems-based analysis of Arabidopsis leaf growth reveals adaptation to water deficit. Molecular Systems Biology 8, p. 606 (2012)

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28.

Journal Article

Balazadeh, S.; Jaspert, N.; Arif, M.; Mueller-Roeber, B.; Maurino, V. G.: Expression of ROS-responsive genes and transcription factors after metabolic formation of H(2)O(2) in chloroplasts. Frontiers in plant science 3, 234 (2012)

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29.

Journal Article

Barlow, P. W.; Fisahn, J.: Lunisolar tidal force and the growth of plant roots, and some other of its effects on plant movements. Annals of Botany 110 (2), pp. 301 - 318 (2012)

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30.

Journal Article

Bartel, M.; Hartmann, S.; Lehmann, K.; Postel, K.; Quesada, H.; Philipp, E. E. R.; Heilmann, K.; Micheel, B.; Stuckas, H.: Identification of sperm proteins as candidate biomarkers for the analysis of reproductive isolation in Mytilus: a case study for the enkurin locus. Marine Biology 159 (10), pp. 2195 - 2207 (2012)

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31.

Journal Article

Basler, G.; Grimbs, S.; Nikoloski, Z.: Optimizing metabolic pathways by screening for feasible synthetic reactions. Biosystems 109 (2), pp. 186 - 191 (2012)

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32.

Journal Article

Beisser, D.; Grohme, M. A.; Kopka, J.; Frohme, M.; Schill, R. O.; Hengherr, S.; Dandekar, T.; Klau, G. W.; Dittrich, M.; Muller, T.: Integrated pathway modules using time-course metabolic profiles and EST data from Milnesium tardigradum. BMC Systems Biology 6, p. 72 (2012)

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33.

Journal Article

Billiau, K.; Sprenger, H.; Schudoma, C.; Walther, D.; Koehl, K. I.: Data management pipeline for plant phenotyping in a multisite project. Functional Plant Biology 39 (10-11), pp. 948 - 957 (2012)

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34.

Journal Article

Bocobza, S.; Willmitzer, L.; Raikhel, N. V.; Aharoni, A.: Discovery of New Modules in Metabolic Biology Using ChemoMetabolomics. Plant Physiology 160 (3), pp. 1160 - 1163 (2012)

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35.

Journal Article

Bringmann, M.; Li, E.; Sampathkumar, A.; Kocabek, T.; Hauser, M.-T.; Persson, S.: POM2/CSI1 is essential for functional association of cellulose synthase and microtubules in Arabidopsis. The Plant Cell 24 (1), pp. 163 - 177 (2012)

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36.

Journal Article

Brotman, Y.; Landau, U.; Pnini, S.; Lisec, J.; Balazadeh, S.; Mueller-Roeber, B.; Zilberstein, A.; Willmitzer, L.; Chet, I.; Viterbo, A.: The LysM Receptor-Like Kinase LysM RLK1 Is Required to Activate Defense and Abiotic-Stress Responses Induced by Overexpression of Fungal Chitinases in Arabidopsis Plants. Molecular Plant 5 (5), pp. 1113 - 1124 (2012)

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37.

Journal Article

Brotman, Y.; Lisec, J.; Meret, M.; Chet, I.; Willmitzer, L.; Viterbo, A.: Transcript and metabolite analysis of the Trichoderma-induced systemic resistance response to Pseudomonas syringae in Arabidopsis thaliana. Microbiology 158 (Pt 1), pp. 139 - 146 (2012)

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38.

Journal Article

Caldana, C.; Fernie, A. R.; Willmitzer, L.; Steinhauser, D.: Unraveling retrograde signaling pathways: finding candidate signaling molecules via metabolomics and systems biology driven approaches. Frontiers in Plant Science 3, p. 267 (2012)

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39.

Journal Article

Calingacion, M. N.; Boualaphanh, C.; Daygon, V. D.; Anacleto, R.; Sackville Hamilton, R.; Biais, B.; Deborde, C.; Maucourt, M.; Moing, A.; Mumm, R. et al.; de Vos, R. C. H.; Erban, A.; Kopka, J.; Hansen, T. H.; Laursen, K. H.; Schjoerring, J. K.; Hall, R. D.; Fitzgerald, M. A.: A genomics and multi-platform metabolomics approach to identify new traits of rice quality in traditional and improved varieties. Metabolomics 8 (5), pp. 771 - 783 (2012)

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40.

Journal Article

Chen, L. Q.; Qu, X. Q.; Hou, B. H.; Sosso, D.; Osorio, S.; Fernie, A. R.; Frommer, W. B.: Sucrose Efflux Mediated by SWEET Proteins as a Key Step for Phloem Transport. Science 335 (6065), pp. 207 - 211 (2012)

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41.

Journal Article

Childs, L. H.; Lisec, J.; Walther, D.: Matapax: An Online High-Throughput Genome-Wide Association Study Pipeline. Plant Physiology 158 (4), pp. 1534 - 1541 (2012)

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42.

Journal Article

Christian, J. O.; Braginets, R.; Schulze, W. X.; Walther, D.: Characterization and Prediction of Protein Phosphorylation Hotspots in Arabidopsis thaliana. Frontiers in Plant Science 3, p. 207 (2012)

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43.

Journal Article

Claeys, H.; Skirycz, A.; Maleux, K.; Inze, D.: DELLA Signaling Mediates Stress-Induced Cell Differentiation in Arabidopsis Leaves through Modulation of Anaphase-Promoting Complex/Cyclosome Activity. Plant Physiology 159 (2), pp. 739 - 747 (2012)

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44.

Journal Article

Colmsee, C.; Mascher, M.; Czauderna, T.; Hartmann, A.; Schluter, U.; Zellerhoff, N.; Schmitz, J.; Brautigam, A.; Pick, T. R.; Alter, P. et al.; Gahrtz, M.; Witt, S.; Fernie, A. R.; Bornke, F.; Fahnenstich, H.; Bucher, M.; Dresselhaus, T.; Weber, A. P.; Schreiber, F.; Scholz, U.; Sonnewald, U.: OPTIMAS-DW: A comprehensive transcriptomics, metabolomics, ionomics, proteomics and phenomics data resource for maize. BMC plant biology 12 (1), p. 245 (2012)

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45.

Journal Article

Cronje, C.; George, G. M.; Fernie, A. R.; Bekker, J.; Kossmann, J.; Bauer, R.: Manipulation of L: -ascorbic acid biosynthesis pathways in Solanum lycopersicum: elevated GDP-mannose pyrophosphorylase activity enhances L: -ascorbate levels in red fruit. Planta 235 (3), pp. 553 - 564 (2012)

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46.

Journal Article

Degenkolbe, T.; Giavalisco, P.; Zuther, E.; Seiwert, B.; Hincha, D. K.; Willmitzer, L.: Differential remodeling of the lipidome during cold acclimation in natural accessions of Arabidopsis thaliana. The Plant Journal 72, pp. 972 - 982 (2012)

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47.

Journal Article

Deinlein, U.; Weber, M.; Schmidt, H.; Rensch, S.; Trampczynska, A.; Hansen, T. H.; Husted, S.; Schjoerring, J. K.; Talke, I. N.; Kraemer, U. et al.; Clemens, S.: Elevated Nicotianamine Levels in Arabidopsis halleri Roots Play a Key Role in Zinc Hyperaccumulation. Plant Cell 24 (2), pp. 708 - 723 (2012)

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48.

Journal Article

Delgado-Cerezo, M.; Sanchez-Rodriguez, C.; Escudero, V.; Miedes, E.; Fernandez, P. V.; Jorda, L.; Hernandez-Blanco, C.; Sanchez-Vallet, A.; Bednarek, P.; Schulze-Lefert, P. et al.; Somerville, S.; Estevez, J. M.; Persson, S.; Molina, A.: Arabidopsis Heterotrimeric G-protein Regulates Cell Wall Defense and Resistance to Necrotrophic Fungi. Molecular Plant 5 (1), pp. 98 - 114 (2012)

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49.

Journal Article

Detmann, K. C.; Araujo, W. L.; Martins, S. C. V.; Sanglard, L. M. V. P.; Reis, J. V.; Detmann, E.; Rodrigues, F. A.; Nunes-Nesi, A.; Fernie, A. R.; DaMatta, F. M.: Silicon nutrition increases grain yield, which, in turn, exerts a feed-forward stimulation of photosynthetic rates via enhanced mesophyll conductance and alters primary metabolism in rice. New Phytologist 196 (3), pp. 752 - 762 (2012)

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50.

Journal Article

Draffehn, A. M.; Durek, P.; Nunes-Nesi, A.; Stich, B.; Fernie, A. R.; Gebhardt, C.: Tapping natural variation at functional level reveals allele specific molecular characteristics of potato invertase Pain-1. Plant, Cell and Environment 35 (12), pp. 2143 - 2154 (2012)

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Publications of the institute

Journal Article (180)