Publications of A. Küken

Journal Article (11)

Journal Article
Küken, A.; Treves, H.; Nikoloski, Z.: A simulation-free constrained regression approach for flux estimation in isotopically nonstationary metabolic flux analysis with applications in microalgae. Frontiers in Plant Science 14, 1140829 (2023)
Journal Article
Águila Ruiz-Sola, M.; Flori, S.; Yuan, Y.; Villain, G.; Sanz-Luque, E.; Redekop, P.; Tokutsu, R.; Küken, A.; Tsichla, A.; Kepesidis, G. et al.; Allorent, G.; Arend, M.; Iacono, F.; Finazzi, G.; Hippler, M.; Nikoloski, Z.; Minagawa, J.; Grossman, A. R.; Petroutsos, D.: Light-independent regulation of algal photoprotection by CO2 availability. Nature Communications 14, 1977 (2023)
Journal Article
Treves, H.; Küken, A.; Arrivault, S.; Ishihara, H.; Hoppe, I.; Erban, A.; Höhne, M.; Moraes, T. A.; Kopka, J.; Szymanski, J. et al.; Nikoloski, Z.; Stitt, M.: Carbon flux through photosynthesis and central carbon metabolism show distinct patterns between algae, C-3 and C-4 plants. Nature Plants 8, pp. 78 - 91 (2021)
Journal Article
Küken, A.; Gennermann, K.; Nikoloski, Z.: Characterization of maximal enzyme catalytic rates in central metabolism of Arabidopsis thaliana. The Plant Journal 103 (6), pp. 2168 - 2177 (2020)
Journal Article
Tong, H.; Küken, A.; Nikoloski, Z.: Integrating molecular markers into metabolic models improves genomic selection for Arabidopsis growth. Nature Communications 11 (1), 2410 (2020)
Journal Article
Küken, A.; Eloundou-Mbebi, J. M. O.; Basler, G.; Nikoloski, Z.: Cellular determinants of metabolite concentration ranges. PLoS Computational Biology 15 (1), e1006687 (2019)
Journal Article
Küken, A.; Nikoloski, Z.: Computational Approaches to Design and Test Plant Synthetic Metabolic Pathways. Plant Physiology 179 (3), pp. 894 - 906 (2019)
Journal Article
Küken, A.; Sommer, F.; Yaneva-Roder, L.; Mackinder, L. C. M.; Höhne, M.; Geimer, S.; Jonikas, M. C.; Schroda, M.; Stitt, M.; Nikoloski, Z. et al.; Mettler, T.: Effects of microcompartmentation on flux distribution and metabolic pools in Chlamydomonas reinhardtii chloroplasts. eLife 7, e37960 (2018)
Journal Article
Basler, G.; Küken, A.; Fernie, A. R.; Nikoloski, Z.: Photorespiratory Bypasses Lead to Increased Growth in Arabidopsis thaliana: Are Predictions Consistent with Experimental Evidence? Frontiers in Bioengineering and Biotechnology 4, 31 (2016)
Journal Article
Eloundou-Mbebi, J. M. O.; Küken, A.; Omranian, N.; Kleessen, S.; Neigenfind, J.; Basler, G.; Nikoloski, Z.: A network property necessary for concentration robustness. Nature Communications 7, 13255 (2016)
Journal Article
Schwahn, K.; Küken, A.; Kliebenstein, D.J.; Fernie, A. R.; Nikoloski, Z.: Observability of plant metabolic networks is reflected in the correlation of metabolic profiles. Plant Physiology 172 (2), pp. 1324 - 1333 (2016)

Book Chapter (1)

Book Chapter
Küken, A.; Nikoloski, Z.: Genome-scale modeling of photorespiratory pathway manipulation. In: Methods in Molecular Biology, Vol. 1653, pp. 195 - 202. Elsevier, Cambridge, MA (2017)

Review Article (1)

Review Article
Tong, H.; Küken, A.; Razaghi-Moghadam, Z.; Nikoloski, Z.: Characterization of effects of genetic variants via genome-scale metabolic modelling. (2021)
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