Max Planck Institute of Molecular Plant Physiology

Publications of the institute

Journal Article (127)

1.

Journal Article

Armbruster, U.; Hertle, A.; Makarenko, E.; Zuehlke, J.; Pribil, M.; Dietzmann, A.; Schliebner, I.; Aseeva, E.; Fenino, E.; Scharfenberg, M. et al.; Voigt, C.; Leister, D.: Chloroplast Proteins without Cleavable Transit Peptides: Rare Exceptions or a Major Constituent of the Chloroplast Proteome? Molecular Plant 2 (6), pp. 1325 - 1335 (2009)

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2.

Journal Article

Börner, T.; Ostersetzer-Biran, O.; Schmitz-Linneweber, C.; Zoschke, R.: Analysis of the regulation of MatK gene expression. Endocytobiosis and cell research: journal of the International Society of Endocytobiology 19, pp. 127 - 135 (2009)

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3.

Journal Article

Horbach, R.; Graf, A.; Weihmann, F.; Antelo, L.; Mathea, S.; Liermann, J. C.; Opatz, T.; Thines, E.; Aguirre, J.; Deising, H. B.: Sfp-Type 4′-Phosphopantetheinyl Transferase Is Indispensable for Fungal Pathogenicity[W]. The Plant Cell 21 (10), pp. 3379 - 3396 (2009)

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4.

Journal Article

Erilova, A.; Brownfield, L.; Exner, V.; Rosa, M.; Twell, D.; Scheid, O. M.; Hennig, L.; Köhler, C.: Imprinting of the Polycomb Group Gene MEDEA Serves as a Ploidy Sensor in Arabidopsis. PLoS Genetics 5 (9), e1000663 (2009)

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5.

Journal Article

Aichinger, E.; Villar, C. B. R.; Farrona, S.; Reyes, J. C.; Hennig, L.; Köhler, C.: CHD3 Proteins and Polycomb Group Proteins Antagonistically Determine Cell Identity in Arabidopsis. PLoS Genetics 5 (8), e1000605 (2009)

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6.

Journal Article

Gutjahr, C.; Casieri, L.; Paszkowski, U.: Glomus intraradices induces changes in root system architecture of rice independently of common symbiosis signaling. New Phytologist 182 (4), pp. 829 - 837 (2009)

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7.

Journal Article

Tillich, M.; Hardel, S. L.; Kupsch, C.; Armbruster, U.; Delannoy, E.; Gualberto, J. M.; Lehwark, P.; Leister, D.; Small, I. D.; Schmitz-Linneweber, C.: Chloroplast ribonucleoprotein CP31A is required for editing and stability of specific chloroplast mRNAs. Proceedings of the National Academy of Sciences of the United States of America 106 (14), pp. 6002 - 6007 (2009)

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8.

Journal Article

Exner, V.; Aichinger, E.; Shu, H.; Wildhaber, T.; Alfarano, P.; Caflisch, A.; Gruissem, W.; Köhler, C.; Hennig, L.: The Chromodomain of LIKE HETEROCHROMATIN PROTEIN 1 Is Essential for H3K27me3 Binding and Function during Arabidopsis Development. PLoS One 4 (4), e5335 (2009)

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9.

Journal Article

Abasolo, W.; Eder, M.; Yamauchi, K.; Obel, N.; Reinecke, A.; Neumetzler, L.; Dunlop, J. W. C.; Mouille, G.; Pauly, M.; Hofte, H. et al.; Burgert, I.: Pectin May Hinder the Unfolding of Xyloglucan Chains during Cell Deformation: Implications of the Mechanical Performance of Arabidopsis Hypocotyls with Pectin Alterations. Molecular Plant 2 (5), pp. 990 - 999 (2009)

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10.

Journal Article

Afzal, A. J.; Natarajan, A.; Saini, N.; Iqbal, M. J.; Geisler, M.; El Shemy, H. A.; Mungur, R.; Willmitzer, L.; Lightfoot, D. A.: The Nematode Resistance Allele at the rhg1 Locus Alters the Proteome and Primary Metabolism of Soybean Roots. Plant Physiology 151 (3), pp. 1264 - 1280 (2009)

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11.

Journal Article

Ahlert, D.; Stegemann, S.; Kahlau, S.; Ruf, S.; Bock, R.: Insensitivity of chloroplast gene expression to DNA methylation. Molecular Genetics and Genomics 282 (1), pp. 17 - 24 (2009)

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12.

Journal Article

Allwood, J. W.; Erban, A.; de Koning, S.; Dunn, W. B.; Lüdemann, A.; Lommen, A.; Kay, L.; Loscher, R.; Kopka, J.; Goodacre, R.: Inter-laboratory reproducibility of fast gas chromatography-electron impact-time of flight mass spectrometry (GC-EI-TOF/MS) based plant metabolomics. Metabolomics 5 (4), pp. 479 - 496 (2009)

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13.

Journal Article

Andorf, S.; Gaertner, T.; Steinfath, M.; Witucka-Wall, H.; Altmann, T.; Repsilber, D.: Towards Systems Biology of Heterosis: A Hypothesis about Molecular Network Structure Applied for the Arabidopsis Metabolome. EURASIP Journal on Bioinformatics and Systems Biology, p. 147157 (2009)

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14.

Journal Article

Angelovici, R.; Fait, A.; Zhu, X. H.; Szymanski, J.; Feldmesser, E.; Fernie, A. R.; Galili, G.: Deciphering Transcriptional and Metabolic Networks Associated with Lysine Metabolism during Arabidopsis Seed Development. Plant Physiology 151 (4), pp. 2058 - 2072 (2009)

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15.

Journal Article

Apel, W.; Bock, R.: Enhancement of Carotenoid Biosynthesis in Transplastomic Tomatoes by Induced Lycopene-to-Provitamin A Conversion. Plant Physiology 151 (1), pp. 59 - 66 (2009)

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16.

Journal Article

Armengaud, P.; Sulpice, R.; Miller, A. J.; Stitt, M.; Amtmann, A.; Gibon, Y.: Multilevel Analysis of Primary Metabolism Provides New Insights into the Role of Potassium Nutrition for Glycolysis and Nitrogen Assimilation in Arabidopsis Roots. Plant Physiology 150 (2), pp. 772 - 785 (2009)

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17.

Journal Article

Armengaud, P.; Zambaux, K.; Hills, A.; Sulpice, R.; Pattison, R. J.; Blatt, M. R.; Amtmann, A.: EZ-Rhizo: integrated software for the fast and accurate measurement of root system architecture. The Plant Journal 57 (5), pp. 945 - 956 (2009)

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18.

Journal Article

Arrivault, S.; Guenther, M.; Ivakov, A.; Feil, R.; Vosloh, D.; van Dongen, J. T.; Sulpice, R.; Stitt, M.: Use of reverse-phase liquid chromatography, linked to tandem mass spectrometry, to profile the Calvin cycle and other metabolic intermediates in Arabidopsis rosettes at different carbon dioxide concentrations. Plant Journal 59 (5), pp. 824 - 839 (2009)

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19.

Journal Article

Baessler, O. Y.; Weiss, J.; Wienkoop, S.; Lehmann, K.; Scheler, C.; Dolle, S.; Schwarz, D.; Franken, P.; George, E.; Worm, M. et al.; Weckwerth, W.: Evidence for Novel Tomato Seed Allergens: IgE-Reactive Legumin and Vicilin Proteins Identified by Multidimensional Protein Fractionation-Mass Spectrometry and in Silico Epitope Modeling. Journal of Proteome Research 8 (3), pp. 1111 - 1122 (2009)

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20.

Journal Article

Barratt, D. H. P.; Derbyshire, P.; Findlay, K.; Pike, M.; Wellner, N.; Lunn, J.; Feil, R.; Simpson, C.; Maule, A. J.; Smith, A. M.: Normal growth of Arabidopsis requires cytosolic invertase but not sucrose synthase. Proceedings of the National Academy of Sciences of the United States of America 106 (31), pp. 13124 - 13129 (2009)

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21.

Journal Article

Baruah, A.; Simkova, K.; Hincha, D. K.; Apel, K.; Laloi, C.: Modulation of O-1(2)-mediated retrograde signaling by the PLEIOTROPIC RESPONSE LOCUS 1 (PRL1) protein, a central integrator of stress and energy signaling. The Plant Journal 60 (1), pp. 22 - 32 (2009)

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22.

Journal Article

Bischoff, V.; Cookson, S. J.; Wu, S.; Scheible, W.-R.: Thaxtomin A affects CESA-complex density, expression of cell wall genes, cell wall composition, and causes ectopic lignification in Arabidopsis thaliana seedlings. Journal of Experimental Botany 60 (3), pp. 955 - 965 (2009)

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23.

Journal Article

Bleidorn, C.; Hill, N.; Erseus, C.; Tiedemann, R.: On the role of character loss in orbiniid phylogeny (Annelida): Molecules vs. morphology. Molecular Phylogenetics and Evolution 52 (1), pp. 57 - 69 (2009)

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24.

Journal Article

Bleidorn, C.; Podsiadlowski, L.; Zhong, M.; Eeckhaut, I.; Hartmann, S.; Halanych, K. M.; Tiedemann, R.: On the phylogenetic position of Myzostomida: can 77 genes get it wrong? BMC Evolutionary Biology 9, p. 150 (2009)

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25.

Journal Article

Bortesi, L.; Rossato, M.; Schuster, F.; Raven, N.; Stadlmann, J.; Avesani, L.; Falorni, A.; Bazzoni, F.; Bock, R.; Schillberg, S. et al.; Pezzotti, M.: Viral and murine interleukin-10 are correctly processed and retain their biological activity when produced in tobacco. BMC Biotechnology 9, p. 22 (2009)

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26.

Journal Article

Brautigam, K.; Dietzel, L.; Kleine, T.; Stroher, E.; Wormuth, D.; Dietz, K. J.; Radke, D.; Wirtz, M.; Hell, R.; Doermann, P. et al.; Nunes-Nesi, A.; Schauer, N.; Fernie, A. R.; Oliver, S. N.; Geigenberger, P.; Leister, D.; Pfannschmidt, T.: Dynamic Plastid Redox Signals Integrate Gene Expression and Metabolism to Induce Distinct Metabolic States in Photosynthetic Acclimation in Arabidopsis. The Plant Cell 21 (9), pp. 2715 - 2732 (2009)

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27.

Journal Article

Brotman, Y.; Makovitzki, A.; Shai, Y.; Chet, I.; Viterbo, A.: Synthetic Ultrashort Cationic Lipopeptides Induce Systemic Plant Defense Responses against Bacterial and Fungal Pathogens. Applied and Environmental Microbiology 75 (16), pp. 5373 - 5379 (2009)

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28.

Journal Article

Bulik, S.; Grimbs, S.; Huthmacher, C.; Selbig, J.; Holzhuetter, H. G.: Kinetic hybrid models composed of mechanistic and simplified enzymatic rate laws - a promising method for speeding up the kinetic modelling of complex metabolic networks. FEBS Journal 276 (2), pp. 410 - 424 (2009)

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29.

Journal Article

Cheng, F. X.; Hartmann, S.; Gupta, M.; Ibrahim, J. G.; Vision, T. J.: A hierarchical model for incomplete alignments in phylogenetic inference. Bioinformatics 25 (5), pp. 592 - 598 (2009)

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30.

Journal Article

Childs, L.; Nikoloski, Z.; May, P.; Walther, D.: Identification and classification of ncRNA molecules using graph properties. Nucleic Acids Research 37 (9), p. e66 (2009)

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31.

Journal Article

Christian, N.; May, P.; Kempa, S.; Handorf, T.; Ebenhoeh, O.: An integrative approach towards completing genome-scale metabolic networks. Molecular Biosystems 5 (12), pp. 1889 - 1903 (2009)

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32.

Journal Article

Cuadros-Inostroza, A.; Caldana, C.; Redestig, H.; Kusano, M.; Lisec, J.; Pena-Cortes, H.; Willmitzer, L.; Hannah, M. A.: TargetSearch - a Bioconductor package for the efficient preprocessing of GC-MS metabolite profiling data. BMC Bioinformatics 10, p. 428 (2009)

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33.

Journal Article

DeBolt, S.; Scheible, W.-R.; Schrick, K.; Auer, M.; Beisson, F.; Bischoff, V.; Bouvier-Nave, P.; Carroll, A.; Hematy, K.; Li, Y. H. et al.; Milne, J.; Nair, M.; Schaller, H.; Zemla, M.; Somerville, C.: Mutations in UDP-Glucose:Sterol Glucosyltransferase in Arabidopsis Cause Transparent Testa Phenotype and Suberization Defect in Seeds. Plant Physiology 151 (1), pp. 78 - 87 (2009)

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34.

Journal Article

Degenkolbe, T.; Do, P. T.; Zuther, E.; Repsilber, D.; Walther, D.; Hincha, D. K.; Koehl, K. I.: Expression profiling of rice cultivars differing in their tolerance to long-term drought stress. Plant Molecular Biology 69 (1-2), pp. 133 - 153 (2009)

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35.

Journal Article

Dita, M. A.; Die, J. V.; Roman, B.; Krajinski, F.; Kuester, H.; Moreno, M. T.; Cubero, J. I.; Rubiales, D.: Gene expression profiling of Medicago truncatula roots in response to the parasitic plant Orobanche crenata. Weed Research 49, pp. 66 - 80 (2009)

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36.

Journal Article

Durek, P.; Schudoma, C.; Weckwerth, W.; Selbig, J.; Walther, D.: Detection and characterization of 3D-signature phosphorylation site motifs and their contribution towards improved phosphorylation site prediction in proteins. BMC Bioinformatics 10, p. 117 (2009)

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37.

Journal Article

Fernie, A. R.; Martinoia, E.: Malate. Jack of all trades or master of a few? Phytochemistry 70 (7), pp. 828 - 832 (2009)

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38.

Journal Article

Fuehrs, H.; Goetze, S.; Specht, A.; Erban, A.; Gallien, S.; Heintz, D.; van Dorsselaer, A.; Kopka, J.; Braun, H. P.; Horst, W. J.: Characterization of leaf apoplastic peroxidases and metabolites in Vigna unguiculata in response to toxic manganese supply and silicon. Journal of Experimental Botany 60 (6), pp. 1663 - 1678 (2009)

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39.

Journal Article

Gaertner, T.; Steinfath, M.; Andorf, S.; Lisec, J.; Meyer, R. C.; Altmann, T.; Willmitzer, L.; Selbig, J.: Improved Heterosis Prediction by Combining Information on DNA- and Metabolic Markers. PLoS One 4 (4), p. e5220 (2009)

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40.

Journal Article

Gajdanowicz, P.; Garcia-Mata, C.; Gonzalez, W.; Morales-Navarro, S. E.; Sharma, T.; Gonzalez-Nilo, F. D.; Gutowicz, J.; Mueller-Roeber, B.; Blatt, M. R.; Dreyer, I.: Distinct roles of the last transmembrane domain in controlling Arabidopsis K+ channel activity. New Phytologist 182 (2), pp. 380 - 391 (2009)

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41.

Journal Article

Giavalisco, P.; Koehl, K. I.; Hummel, J.; Seiwert, B.; Willmitzer, L.: 13C isotope-labeled metabolomes allowing for improved compound annotation and relative quantification in liquid chromatography-mass spectrometry-based metabolomic research. Analytical Chemistry 81 (15), pp. 6546 - 6551 (2009)

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42.

Journal Article

Gibon, Y.; Pyl, E. T.; Sulpice, R.; Lunn, J. E.; Hoehne, M.; Guenther, M.; Stitt, M.: Adjustment of growth, starch turnover, protein content and central metabolism to a decrease of the carbon supply when Arabidopsis is grown in very short photoperiods. Plant Cell and Environment 32 (7), pp. 859 - 874 (2009)

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43.

Journal Article

Gilbert, L.; Alhagdow, M.; Nunes-Nesi, A.; Quemener, B.; Guillon, F.; Bouchet, B.; Faurobert, M.; Gouble, B.; Page, D.; Garcia, V. et al.; Petit, J.; Stevens, R.; Causse, M.; Fernie, A. R.; Lahaye, M.; Rothan, C.; Baldet, P.: GDP-d-mannose 3,5-epimerase (GME) plays a key role at the intersection of ascorbate and non-cellulosic cell-wall biosynthesis in tomato. The Plant Journal 60 (3), pp. 499 - 508 (2009)

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44.

Journal Article

Gille, S.; Hansel, U.; Ziemann, M.; Pauly, M.: Identification of plant cell wall mutants by means of a forward chemical genetic approach using hydrolases. Proceedings of the National Academy of Sciences of the United States of America 106 (34), pp. 14699 - 14704 (2009)

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45.

Journal Article

Gruber, V.; Blanchet, S.; Diet, A.; Zahaf, O.; Boualem, A.; Kakar, K.; Alunni, B.; Udvardi, M. K.; Frugier, F.; Crespi, M.: Identification of transcription factors involved in root apex responses to salt stress in Medicago truncatula. Molecular Genetics and Genomics 281 (1), pp. 55 - 66 (2009)

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46.

Journal Article

Guenther, S.; von Eichborn, J.; May, P.; Preissner, R.: JAIL: a structure-based interface library for macromolecules. Nucleic Acids Research 37 (Database issue), pp. 338 - 341 (2009)

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47.

Journal Article

Guether, M.; Balestrini, R.; Hannah, M. A.; He, J.; Udvardi, M. K.; Bonfante, P.: Genome-wide reprogramming of regulatory networks, transport, cell wall and membrane biogenesis during arbuscular mycorrhizal symbiosis in Lotus japonicus. New Phytologist 182 (1), pp. 200 - 212 (2009)

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48.

Journal Article

Gutjahr, C.; Novero, M.; Guether, M.; Montanari, O.; Udvardi, M. K.; Bonfante, P.: Presymbiotic factors released by the arbuscular mycorrhizal fungus Gigaspora margarita induce starch accumulation in Lotus japonicus roots. New Phytologist 183 (1), pp. 53 - 61 (2009)

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49.

Journal Article

Gutjahr, C.; Novero, M.; Guether, M.; Montanari, O.; Udvardi, M.; Bonfante, P.: Presymbiotic factors released by the arbuscular mycorrhizal fungus Gigaspora margarita induce starch accumulation in Lotus japonicus roots. New Phytologist 183 (1), pp. 53 - 61 (2009)

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50.

Journal Article

Hannemann, J.; Poorter, H.; Usadel, B.; Blaesing, O. E.; Finck, A.; Tardieu, F.; Atkin, O. K.; Pons, T.; Stitt, M.; Gibon, Y.: Xeml Lab: a tool that supports the design of experiments at a graphical interface and generates computer-readable metadata files, which capture information about genotypes, growth conditions, environmental perturbations and sampling strategy. Plant Cell and Environment 32 (9), pp. 1185 - 1200 (2009)

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