Publications of the MPI

1.

Journal Article

Calderan-Rodrigues, M.J.; Luzarowski, M.; Monte Bello, C.C.; Minen, R.I.; Zühlke, B. M.; Nikoloski, Z.; Skirycz, A.; Caldana, C.: Proteogenic Dipeptides Are Characterized by Diel Fluctuations and Target of Rapamycin Complex-Signaling Dependency in the Model Plant Arabidopsis thaliana. Frontiers in Plant Science 12, 758933 (2021)

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2.

Journal Article

Treves, H.; Küken, A.; Arrivault, S.; Ishihara, H.; Hoppe, I.; Erban, A.; Höhne, M.; Moraes, T. A.; Kopka, J.; Szymanski, J. et al.; Nikoloski, Z.; Stitt, M.: Carbon flux through photosynthesis and central carbon metabolism show distinct patterns between algae, C-3 and C-4 plants. Nature Plants 8, pp. 78 - 91 (2021)

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3.

Journal Article

Martinez-Seidel, F.; Hsieh, Y.-C.; Walther, D.; Kopka, J.; Firmino, A.: COSNet(i): ComplexOme-Structural Network Interpreter used to study spatial enrichment in metazoan ribosomes. BMC Bioinformatics 22, 605 (2021)

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David, Z.; Swart, C.; Graf, A.; Arrivault, S.; Tillich, M.; Proost, S.; Nikoloski, Z.; Stitt, M.; Bock, R.; Mühlhaus, M. et al.; Boulouis, A.: Topology of the redox network during induction of photosynthesis as revealed by time-resolved proteomics in tobacco. Science Advances 7 (51), eabi8307 (2021)

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Journal Article

Frusciante, S.; Demurtas, O. C.; Sulli, M.; Mini, P.; Aprea, G.; Diretto, G.; Karcher, D.; Bock, R.; Giuliano, G.: Heterologous expression of Bixa orellana cleavage dioxygenase 4–3 drives crocin but not bixin biosynthesis. Plant Physiology 188 (3), pp. 1469 - 1482 (2021)

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Journal Article

Verbančič, J.; Huang, J.J.; McFarlane, H.E.: Analysis of cellulose synthase activity in Arabidopsis using spinning disk microscopy. STAR Protocols 2 (4), 100863 (2021)

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7.

Journal Article

Shen, S.; Peng, M.; Fang, H.; Wang, Z.; Zhou, S.; Jing, X.; Zhang, M.; Yang, C.; Guo, H.; Li, Y. et al.; Lei, L.; Shi, Y.; Sun, Y.; Liu, X.; Xu, C.; Tohge, T.; Yuan, M.; Fernie, A. R.; Ning, Y.; Wang, G.; Luo, J.: An Oryza-specific hydroxycinnamoyl tyramine gene cluster contributes to enhanced disease resistance. Science Bulletin 66 (23), pp. 2369 - 2380 (2021)

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8.

Journal Article

Qiu, Y.; Köhler, C.: Endosperm evolution by duplicated and neofunctionalized Type I MADS-box transcription factors. Molecular Biology and Evolution 39 (1), msab355 (2021)

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9.

Journal Article

Fadoul, H.E.; Rivas, F.J.M.; Neumann, K.; Balazadeh, S.; Fernie, A. R.; Alseekh, S.: Comparative molecular and metabolic profiling of two contrasting wheat cultivars under drought stress. International Journal of Molecular Sciences 22 (24), 13287 (2021)

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10.

Journal Article

Hashemi, S.; Razaghi-Moghadam, Z.; Nikoloski, Z.: Identification of flux trade-offs in metabolic networks. Scientific Reports 11 (1), 23776 (2021)

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11.

Journal Article

Siani, R.; Stabl, G.; Gutjahr, C.; Schloter, M.; Radl, V.: Acidovorax pan-genome reveals specific functional traits for plant beneficial and pathogenic plant-associations. Microbial Genomics 7 (12), 000666 (2021)

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12.

Journal Article

Zsögön, A.; Peres, L. E. P.; Xiao, Y.; Yan, J.; Fernie, A. R.: Enhancing crop diversity for food security in the face of climate uncertainty. The Plant Journal 109 (2), pp. 402 - 414 (2021)

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13.

Journal Article

Fàbregas, N.; Fernie, A. R.: The reliance of phytohormone biosynthesis on primary metabolite precursors. Journal of Plant Physiology 268, 153589 (2021)

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14.

Journal Article

Qin, K.; Fernie, A. R.; Zhang, Y.: The assembly of super-complexes in the plant chloroplast. Biomolecules 11 (12), 1839 (2021)

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15.

Journal Article

Fàbregas, N.; Fernie, A. R.: The interface of central metabolism with hormone signaling in plants. Current Biology 31 (23), pp. R1535 - R1548 (2021)

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16.

Journal Article

Tiozon, R.J.N.; Bonto, A.; Sreenivasulu, N.: Enhancing the functional properties of rice starch through biopolymer blending for industrial applications: A review. International Journal of Biological Macromolecules 192, pp. 100 - 117 (2021)

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Journal Article

Wagner, M.; Zhang, B.; Tauffenberger, A.; Schroeder, F.C.; Skirycz, A.: Experimental methods for dissecting the terraincognita of protein-metabolite interactomes. Current Opinion in Systems Biology 28, 100403 (2021)

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18.

Journal Article

Kasote, D.; Tiozon, R.J.N.; Sartagoda, K. J. D.; Itagi, H.; Roy, P.; Kohli, A.; Regina, A.; Sreenivasulu, N.: Food Processing Technologies to Develop Functional Foods With Enriched Bioactive Phenolic Compounds in Cereals. Frontiers in Plant Science 12, 771276 (2021)

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19.

Journal Article

Curtin, S.; Qi, Y.; Peres, L. E. P.; Fernie, A. R.; Zsögön, A.: Pathways to de novo domestication of crop wild relatives. Plant Physiology 188 (4), pp. 1746 - 1756 (2021)

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20.

Journal Article

Ginsawaeng, O.; Heise, C.; Sangwan, R.; Karcher, D.; Hernández-Sánchez, I.E.; Sampathkumar, A.; Zuther, E.: Subcellular Localization of Seed-Expressed LEA_4 Proteins Reveals Liquid-Liquid Phase Separation for LEA9 and for LEA48 Homo- and LEA42-LEA48 Heterodimers. Biomolecules 11 (12), 1770 (2021)

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21.

Journal Article

Joshi, J.; Hasnain, G.; Logue, T.; Lynch, M.; Wu, S.; Guan, J.; Alseekh, S.; Fernie, A. R.; Hanson, A.; McCarty, D.: A Core Metabolome Response of Maize Leaves Subjected to Long-Duration Abiotic Stresses. Metabolites 11 (11), 797 (2021)

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22.

Journal Article

Candido-Sobrinho, S.; Lima, V.; Freire, F.; de Souza, L. P.; Gago, J.; Fernie, A. R.; Daloso, D.: Metabolism-mediated mechanisms underpin the differential stomatal speediness regulation among ferns and angiosperms. Plant, Cell and Environment 45 (2), pp. 296 - 311 (2021)

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23.

Journal Article

Zhou, Y.; Li, X.; Guo, Q.; Liu, P.; Li, Y.; Wu, C.; Yang, G.; Huang, J.; Zhang, S.; Zheng, C. et al.; Yan, K.: Salt responsive alternative splicing of a RING finger E3 ligase modulates the salt stress tolerance by fine-tuning the balance of COP9 signalosome subunit 5A. PLoS Genetics 17 (11), 1009898. (2021)

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24.

Journal Article

Zhu, F.; Alseekh, S.; Wen, W.; Cheng, Y.; Fernie, A. R.: Genome-wide association studies of Arabidopsis dark-induced senescence reveals signatures of autophagy in metabolic reprogramming. Autophagy 18 (2), pp. 457 - 458 (2021)

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25.

Journal Article

Oliver, C.; Annacondia, M. L.; Wang, Z.; Jullien, P. E.; Slotkin, R. K.; Köhler, C.; Martinez, G.: The miRNome function transitions from regulating developmental genes to transposable elements during pollen maturation. The Plant Cell 34 (2), pp. 784 - 801 (2021)

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26.

Journal Article

Machado, M.; Vaz, M. G. M. V.; Bromke, M. A.; Rosa, R. M.; Covell, L.; de Souza, L. P.; Rocha, D. I.; Martins, M. A.; Araújo, W. L.; Szymański, J. et al.; Nunes-Nesi, A.: Metabolic stability of freshwater Nitzschia palea strains under silicon stress associated with triacylglycerol accumulation. Algal Research 60, 102554 (2021)

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27.

Journal Article

Gabriel, C.; Fernhout, J.-J.; Fichtner, F.; Feil, R.; Lunn, J. E.; Kossmann, J.; Lloyd, J. R.; van der Vyver, C.: Genetic manipulation of trehalose-6-phosphate synthase results in changes in the soluble sugar profile in transgenic sugarcane stems. Plant Direct 5 (11), e358 (2021)

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28.

Journal Article

da Fonseca-Pereira, P.; Pham, P. A.; Cavalcanti, J. H. F.; Omena-Garcia, R. P.; Barros, J. A. S.; Rosado-Souza, L.; Vallarino, J. G.; Mutwil, M.; Avin-Wittenberg, T.; Nunes-Nesi, A. et al.; Fernie, A. R.; Araújo, W. L.: The Arabidopsis electron-transfer flavoprotein:ubiquinone oxidoreductase is required during normal seed development and germination. The Plant Journal 109 (1), pp. 196 - 214 (2021)

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29.

Journal Article

Del-Saz, N. F.; Douthe, C.; Carriquí, M.; Ortíz, J.; Sanhueza, C.; Rivas-Medina, A.; McDonald, A.; Fernie, A. R.; Ribas-Carbo, M.; Gago, J. et al.; Florez-Sarasa, I.; Flexas, J.: Different Metabolic Roles for Alternative Oxidase in Leaves of Palustrine and Terrestrial Species. Frontiers in Plant Science 12, 752795 (2021)

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30.

Journal Article

Wang, S.; Xiao, Y.; Zhou, Z.-W.; Yuan, J.; Guo, H.; Yang, Z.; Yang, J.; Sun, P.; Sun, L.; Deng, Y. et al.; Xie, W.-Z.; Song, J.-M.; Qamar, M. T. u.; Xia, W.; Liu, R.; Gong, S.; Wang, Y.; Wang, F.; Liu, X.; Fernie, A. R.; Wang, X.; Fan, H.; Chen, L.-L.; Luo, J.: High-quality reference genome sequences of two coconut cultivars provide insights into evolution of monocot chromosomes and differentiation of fiber content and plant height. Genome Biology: Biology for the Post-Genomic Era 22 (1), 304 (2021)

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31.

Journal Article

Garg, V.; Dudchenko, O.; Wang, J.; Khan, A.W.; Gupta, S.; Kaur, P.; Han, K.; Saxena, R.K.; Kale, S.M.; Pham, M. et al.; Yu, J.; Chitikineni, A.; Zhang, Z.; Fan, G.; Lui, C.; Valluri, V.; Meng, F.; Bhandari, A.; Liu, X.; Yang, T.; Chen, H.; Valliyodan, B.; Roorkiwal, M.; Shi, C.; Yang, H.B.; Durand, N.C.; Pandey, M.K.; Li, G.; Barmukh, R.; Wang, X.; Chen, X.; Lam, H.-M.; Jiang, H.; Zong, X.; Liang, X.; Liu, X.; Liao, B.; Guo, B.; Jackson, S.; Nguyen, H.T.; Zhuang, W.; Shubo, W.; Wang, X.; Aiden, E.L.; Bennetzen, J.L.; Varshney, R.K.: Chromosome-length genome assemblies of six legume species provide insights into genome organization, evolution, and agronomic traits for crop improvement. Journal of Advanced Research (2021)

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32.

Journal Article

Schmid, C.; Mittermeier-Klessinger, V.; Peters, V.; Berger, F.; Kramler, M.; Heuberger, H.; Rinder, R.; Hofmann, T.; Gutjahr, C.; Dawid, C.: Quantitative Mapping of Flavor and Pharmacologically Active Compounds in European Licorice Roots (Glycyrrhiza glabra L.) in Response to Growth Conditions and Arbuscular Mycorrhiza Symbiosis. Journal of Agricultural and Food Chemistry 69 (44), pp. 13173 - 13189 (2021)

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33.

Journal Article

Jiang, X.; Zhang, W.; Fernie, A. R.; Wen, W.: Combining novel technologies with interdisciplinary basic research to enhance horticultural crops. The Plant Journal 109 (1), pp. 35 - 46 (2021)

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34.

Journal Article

Wang, J. Y.; Alseekh, S.; Xiao, T.; Ablazov, A.; de Souza, L. P.; Fiorilli, V.; Anggarani, M.; Lin, P.-Y.; Votta, C.; Novero, M. et al.; Jamil, M.; Lanfranco, L.; Hsing, Y.-I. C.; Blilou, I.; Fernie, A.; Al-Babili, S.: Multi-omics approaches explain the growth-promoting effect of the apocarotenoid growth regulator zaxinone in rice. Communications Biology 4, 1222 (2021)

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35.

Journal Article

Borràs, D.; Barchi, L.; Schulz, K.; Moglia, A.; Acquadro, A.; Kamranfar, I.; Balazadeh, S.; Lanteri, S.: Transcriptome-Based Identification and Functional Characterization of NAC Transcription Factors Responsive to Drought Stress in Capsicum annuum L. Frontiers in Genetics 12, 743902 (2021)

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36.

Journal Article

Angeleska, A.; Omranian, N.; Nikoloski, Z.: Coherent network partitions: Characterizations with cographs and prime graphs. Theoretical computer science 894, pp. 3 - 11 (2021)

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37.

Journal Article

Zhu, F.; Alseekh, S.; Koper, K.; Tong, H.; Nikoloski, Z.; Naake, T.; Liu, H.; Yan, J.; Brotman, Y.; Wen, W. et al.; Maeda, H.; Cheng, Y.; Fernie, A. R.: Genome-wide association of the metabolic shifts underpinning dark-induced senescence in Arabidopsis. The Plant Cell 34 (1), pp. 557 - 578 (2021)

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38.

Journal Article

Schaarschmidt, S.; Glaubitz, U.; Erban, A.; Kopka, J.; Zuther, E.: Differentiation of the high night temperature response in leaf segments of rice cultivars with contrasting tolerance. International Journal of Molecular Sciences 22 (19), 10451 (2021)

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39.

Journal Article

Pimentel, D.; Amaro, R.; Erban, A.; Mauri, N.; Soares, F.; Rego, C.; Martínez-Zapater, J.M.; Mithöfer, A.; Kopka, J.; Fortes, A.M.: Transcriptional, hormonal, and metabolic changes in susceptible grape berries under powdery mildew infection. Journal of Experimental Botany 72 (18), pp. 6544 - 6569 (2021)

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40.

Journal Article

Wang, Q.; Bao, X.; Chen, S.; Zhong, H.; Liu, Y.; Zhang, L.; Xia, Y.; Kragler, F.; Luo, M.; Li, X. et al.; Lam, H.-M.; Zhang, S.: AtHDA6 functions as an H3K18ac eraser to maintain pericentromeric CHG methylation in Arabidopsis thaliana. Nucleic Acids Research 49 (17), pp. 9755 - 9767 (2021)

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41.

Journal Article

Omini, J.; Wojciechowska, I.; Skirycz, A.; Moriyama, H.; Obata, T.: Association of the malate dehydrogenase-citrate synthase metabolon is modulated by intermediates of the Krebs tricarboxylic acid cycle. Scientific Reports 11 (1), 18770 (2021)

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42.

Journal Article

Omranian, N.; Angeleska, A.; Nikoloski, Z.: Efficient and accurate identification of protein complexes from protein-protein interaction networks based on the clustering coefficient. Computational and Structural Biotechnology Journal 19, pp. 5255 - 5263 (2021)

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43.

Journal Article

DeTar, R.A.; Barahimipour, R.; Manavski, N.; Schwenkert, S.; Höhner, R.; Bölter, B.; Inaba, T.; Meurer, J.; Zoschke, R.; Kunz, H.-H.: Erratum: Loss of inner-envelope K +/H + exchangers impairs plastid rRNA maturation and gene expression. The Plant Cell 33 (12), p. 3746 - 3746 (2021)

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44.

Journal Article

Nieva, A.S.; Romero, F. M.; Erban, A.; Carrasco, P.; Ruiz, O. A.; Kopka, J.: Metabolic Profiling and Metabolite Correlation Network Analysis Reveal That Fusarium solani Induces Differential Metabolic Responses in Lotus japonicus and Lotus tenuis against Severe Phosphate Starvation. Journal of Fungi 7 (9), 765 (2021)

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45.

Journal Article

Muralidhara, P.; Weiste, C.; Collani, S.; Krischke, M.; Kreisz, P.; Draken, J.; Feil, R.; Mair, A.; Teige, M.; Müller, M. J. et al.; Schmid, M.; Becker, D.; Lunn, J. E.; Rolland, F.; Hanson, J.; Dröge-Laser, W.: Perturbations in plant energy homeostasis prime lateral root initiation via SnRK1-bZIP63-ARF19 signaling. Proceedings of the National Academy of Sciences of the United States of America 118 (37), e2106961118 (2021)

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46.

Journal Article

Gao, J.; van Kleeff, P.J.M.; de Boer, M.H.; Erban, A.; Kopka, J.; Hincha, D. K.; de Boer, A.H.: Ion Homeostasis and Metabolome Analysis of Arabidopsis 14-3-3 Quadruple Mutants to Salt Stress. Frontiers in Plant Science 12, 697324 (2021)

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47.

Journal Article

Zhang, Y.; Fernie, A. R.: Stable and temporary enzyme complexes and metabolons involved in energy and redox metabolism. ANTIOXIDANTS & REDOX SIGNALING 35 (10), pp. 788 - 807 (2021)

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48.

Journal Article

Medeiros, D.B.; Aarabi, F.; Rivas f; Fernie, A. R.: The knowns and unknowns of intracellular partitioning of carbon and nitrogen, with focus on the organic acid-mediated interplay between mitochondrion and chloroplast. Journal of Plant Physiology 266, 153521 (2021)

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49.

Journal Article

Tuvia, N.; Pivovarova-Ramich, O.; Murahovschi, V.; Lück, S.; Grudziecki, A.; Ost, A.-C.; Kruse, M.; Nikiforova, V.; Osterhoff, M.; Gottmann, P. et al.; GÖgebakan, {.; Sticht, C.; Gretz, N.; Schupp, M.; Schürmann, A.; Rudovich, N.; Pfeiffer, A. F.H.; Kramer, A.: Insulin directly regulates the circadian clock in adipose tissue. Diabetes 70 (6), pp. 1985 - 1999 (2021)

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50.

Journal Article

Yuan, H.; Cao, G.; Hou, X.; Huang, M.; Du, P.; Tan, T.; Zhang, Y.; Zhou, H.; Liu, X.; Liu, L. et al.; Jiangfang, Y.; Li, Y.; Liu, Z.; Fang, C.; Zhao, L.; Fernie, A. R.; Luo, J.: Development of a widely targeted volatilomics method for profiling volatilomes in plants. Molecular Plant 15 (1), pp. 189 - 202 (2021)

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Publications of the institute

Journal Article (232)