Publications of the institute

Journal Article (171)

  1. 1.
    Journal Article
    Salek, R. M.; Neumann, S.; Schober, D.; Hummel, J.; Billiau, K.; Kopka, J.; Correa, E.; Reijmers, T.; Rosato, A.; Tenori, L. et al.; Turano, P.; Marin, S.; Deborde, C.; Jacob, D.; Rolin, D.; Dartigues, B.; Conesa, P.; Haug, K.; Rocca-Serra, P.; O'Hagan, S.; Hao, J.; Vliet, M. v.; Sysi-Aho, M.; Ludwig, C.; Bouwman, J.; Cascante, M.; Ebbels, T.; Griffin, J. L.; Moing, A.; Nikolski, M.; Oresic, M.; Sansone, S.-A.; Viant, M. R.; Goodacre, R.; Guenther, U. L.; Hankemeier, T.; Luchinat, C.; Walther, D.; Steinbeck, C.: COordination of Standards in MetabOlomicS (COSMOS): facilitating integrated metabolomics data access. Metabolomics 11 (6), pp. 1587 - 1597 (2015)
  2. 2.
    Journal Article
    Bunik, V. I.; Artiukhov, A.; Kazantsev, A.; Goncalves, R.; Daloso, D. M.; Oppermann, H.; Kulakovskaya, E.; Lukashev, N.; Fernie, A. R.; Brand, M. et al.; Gaunitz, F.: Specific inhibition by synthetic analogs of pyruvate reveals that the pyruvate dehydrogenase reaction is essential for metabolism and viability of glioblastoma cells. ONCOTARGET 6 (37), pp. 40036 - 40052 (2015)
  3. 3.
    Journal Article
    Bordag, N.; Klie, S.; Juerchott, K.; Vierheller, J.; Schiewe, H.; Albrecht, V.; Tonn, J.-C.; Schwartz, C.; Schichor, C.; Selbig, J.: Glucocorticoid (dexamethasone)-induced metabolome changes in healthy males suggest prediction of response and side effects. Scientific Reports 5, 15954 (2015)
  4. 4.
    Journal Article
    Barahimipour, R.; Strenkert, D.; Neupert, J.; Schroda, M.; Merchant, S. S.; Bock, R.: Dissecting the contributions of GC content and codon usage to gene expression in the model alga Chlamydomonas reinhardtii. The Plant Journal 84 (4), pp. 704 - 717 (2015)
  5. 5.
    Journal Article
    Daloso, D. M.; Antunes, W. C.; Pinheiro, D. P.; Waquim, J. P.; Araujo, W. L.; Loureiro, M. E.; Fernie, A. R.; Williams, T. C. R.: Tobacco guard cells fix CO2 by both Rubisco and PEPcase while sucrose acts as a substrate during light-induced stomatal opening. Plant, Cell and Environment 38 (11), pp. 2353 - 2371 (2015)
  6. 6.
    Journal Article
    Liang, C.; Zhang, Y.; Cheng, S.; Osorio, S.; Sun, Y.; Fernie, A. R.; Cheung, C. Y. M.; Lim, B. L.: Impacts of high ATP supply from chloroplasts and mitochondria on the leaf metabolism of Arabidopsis thaliana. Frontiers in Plant Science 6, 922 (2015)
  7. 7.
    Journal Article
    Koehler, G.; Rohloff, J.; Wilson, R. C.; Kopka, J.; Erban, A.; Winge, P.; Bones, A. M.; Davik, J.; Alsheikh, M. K.; Randall, S. K.: Integrative "omic" analysis reveals distinctive cold responses in leaves and roots of strawberry, Fragaria x ananassa 'Korona'. Frontiers in Plant Science 6, 826 (2015)
  8. 8.
    Journal Article
    Schneider, R.; Persson, S.: Another brick in the wall. Science 350 (6257), pp. 156 - 157 (2015)
  9. 9.
    Journal Article
    Watanabe, Y.; Meents, M. J.; McDonnell, L. M.; Barkwill, S.; Sampathkumar, A.; Cartwright, H. N.; Demura, T.; Ehrhardt, D. W.; Samuels, A. L.; Mansfield, S. D.: Visualization of cellulose synthases in Arabidopsis secondary cell walls. Science 350 (6257), pp. 198 - 203 (2015)
  10. 10.
    Journal Article
    Hameed, M. W.; Aziz, U.-D.: AN IMPROVED, SIMPLE, INEXPENSIVE AND HIGHLY FLEXIBLE HYDROPONIC SETUP FOR ROOT MITOCHONDRIA ISOLATION FROM ARABIDOPSIS AND NICOTIANA PANTS. Pakistan Journal of Botany 47 (5), pp. 2037 - 2043 (2015)
  11. 11.
    Journal Article
    Monne, M.; Miniero, D. V.; Obata, T.; Daddabbo, L.; Palmieri, L.; Vozza, A.; Nicolardi, M. C.; Fernie, A. R.; Palmieri, F.: Functional characterization and organ distribution of three mitochondrial ATP-Mg/P-i carriers in Arabidopsis thaliana. Biochimica et Biophysica Acta-Bioenergetics 1847 (10), pp. 1220 - 1230 (2015)
  12. 12.
    Journal Article
    Batushansky, A.; Kirma, M.; Grillich, N.; Pham, P. A.; Rentsch, D.; Galili, G.; Fernie, A. R.; Fait, A.: The transporter GAT1 plays an important role in GABA-mediated carbon-nitrogen interactions in Arabidopsis. Frontiers in Plant Science 6, 785 (2015)
  13. 13.
    Journal Article
    Poust, S.; Piety, J.; Bar-Even, A.; Louw, C.; Baker, D.; Keasling, J. D.; Siegel, J. B.: Mechanistic Analysis of an Engineered Enzyme that Catalyzes the Formose Reaction. Chembiochem 16 (13), pp. 1950 - 1954 (2015)
  14. 14.
    Journal Article
    Rosado-Souza, L.; Scossa, F.; Chaves, I. S.; Kleessen, S.; Salvador, L. F. D.; Milagre, J. C.; Finger, F.; Bhering, L. L.; Sulpice, R.; Araujo, W. L. et al.; Nikoloski, Z.; Fernie, A. R.; Nunes-Nesi, A.: Exploring natural variation of photosynthetic, primary metabolism and growth parameters in a large panel of Capsicum chinense accessions. Planta 242 (3), pp. 677 - 691 (2015)
  15. 15.
    Journal Article
    Colling, J.; Tohge, T.; De Clercq, R.; Brunoud, G.; Vernoux, T.; Fernie, A. R.; Makunga, N. P.; Goossens, A.; Pauwels, L.: Overexpression of the Arabidopsis thaliana signalling peptide TAXIMIN1 affects lateral organ development. (2015)
  16. 16.
    Journal Article
    Fettke, J.; Fernie, A. R.: Intracellular and cell-to-apoplast compartmentation of carbohydrate metabolism. Trends in Plant Science 20 (8), pp. 490 - 497 (2015)
  17. 17.
    Journal Article
    Gerlach, N.; Schmitz, J.; Polatajko, A.; Schlueter, U.; Fahnenstich, H.; Witt, S.; Fernie, A. R.; Uroic, K.; Scholz, U.; Sonnewald, U. et al.; Bucher, M.: An integrated functional approach to dissect systemic responses in maize to arbuscular mycorrhizal symbiosis. Plant, Cell and Environment 38 (8), pp. 1591 - 1612 (2015)
  18. 18.
    Journal Article
    Kuehn, K.; Obata, T.; Feher, K.; Bock, R.; Fernie, A. R.; Meyer, E. H.: Complete Mitochondrial Complex I Deficiency Induces an Up-Regulation of Respiratory Fluxes That Is Abolished by Traces of Functional Complex I. Plant Physiology 168 (4), pp. 1537 - 1549 (2015)
  19. 19.
    Journal Article
    Medeiros, D. B.; Daloso, D. M.; Fernie, A. R.; Nikoloski, Z.; Araujo, W. L.: Utilizing systems biology to unravel stomatal function and the hierarchies underpinning its control. Plant, Cell and Environment 38 (8), pp. 1457 - 1470 (2015)
  20. 20.
    Journal Article
    Schulz, E.; Tohge, T.; Zuther, E.; Fernie, A. R.; Hincha, D. K.: Natural variation in flavonol and anthocyanin metabolism during cold acclimation in Arabidopsis thaliana accessions. Plant, Cell and Environment 38 (8), pp. 1658 - 1672 (2015)
  21. 21.
    Journal Article
    Ort, D. R.; Merchant, S. S.; Alric, J.; Barkan, A.; Blankenship, R. E.; Bock, R.; Croce, R.; Hanson, M. R.; Hibberd, J. M.; Long, S. P. et al.; Moore, T. A.; Moroney, J.; Niyogi, K. K.; Parry, M. A. J.; Peralta-Yahya, P. P.; Prince, R. C.; Redding, K. E.; Spalding, M. H.; van Wijk, K. J.; Vermaas, W. F. J.; von Caemmerer, S.; Weber, A. P. M.; Yeates, T. O.; Yuan, J. S.; Zhu, X. G.: Redesigning photosynthesis to sustainably meet global food and bioenergy demand. Proceedings of the National Academy of Sciences of the United States of America 112 (28), pp. 8529 - 8536 (2015)
  22. 22.
    Journal Article
    Curto, M.; Krajinski, F.; Schlereth, A.; Rubiales, D.: Transcriptional profiling of Medicago truncatula during Erysiphe pisi infection. Frontiers in Plant Science 6, 517 (2015)
  23. 23.
    Journal Article
    Arrivault, S.; Guenther, M.; Fry, S. C.; Fünfgeld, M. F.F.; Veye, D.; Mettler-Altmann, T.; Stitt, M.; Lunn, J. E.: Synthesis and Use of Stable-Isotope-Labeled Internal Standards for Quantification of Phosphorylated Metabolites by LC-MS/MS. Analytical Chemistry 87 (13), pp. 6896 - 6904 (2015)
  24. 24.
    Journal Article
    Omidbakhshfard, M. A.; Proost, S.; Fujikura, U.; Mueller-Roeber, B.: Growth-Regulating Factors (GRFs): A Small Transcription Factor Family with Important Functions in Plant Biology. Molecular Plant 8 (7), pp. 998 - 1010 (2015)
  25. 25.
    Journal Article
    Bui, L. T.; Giuntoli, B.; Kosmacz, M.; Parlanti, S.; Licausi, F.: Constitutively expressed ERF-VII transcription factors redundantly activate the core anaerobic response in Arabidopsis thaliana. Plant Science 236, pp. 37 - 43 (2015)
  26. 26.
    Journal Article
    Dyson, B. C.; Allwood, J. W.; Feil, R.; Xu, Y.; Miller, M.; Bowsher, C. G.; Goodacre, R.; Lunn, J. E.; Johnson, G. N.: Acclimation of metabolism to light in Arabidopsis thaliana: the glucose 6-phosphate/phosphate translocator GPT2 directs metabolic acclimation. Plant, Cell and Environment 38 (7), pp. 1404 - 1417 (2015)
  27. 27.
    Journal Article
    Timm, S.; Wittmiss, M.; Gamlien, S.; Ewald, R.; Florian, A.; Frank, M.; Wirtz, M.; Hell, R.; Fernie, A. R.; Bauwea, H.: Mitochondrial Dihydrolipoyl Dehydrogenase Activity Shapes Photosynthesis and Photorespiration of Arabidopsis thaliana. Plant Cell 27 (7), pp. 1968 - 1984 (2015)
  28. 28.
    Journal Article
    Xu, E.; Vaahtera, L.; Horak, H.; Hincha, D. K.; Heyer, A. G.; Brosche, M.: Quantitative trait loci mapping and transcriptome analysis reveal candidate genes regulating the response to ozone in Arabidopsis thaliana. Plant, Cell and Environment 38 (7), pp. 1418 - 1433 (2015)
  29. 29.
    Journal Article
    Barbier, F. F.; Lunn, J. E.; Beveridge, C. A.: Ready, steady, go! A sugar hit starts the race to shoot branching. Current Opinion in Plant Biology 25, pp. 39 - 45 (2015)
  30. 30.
    Journal Article
    Benard, C.; Bernillon, S.; Biais, B.; Osorio, S.; Maucourt, M.; Ballias, P.; Deborde, C.; Colombie, S.; Cabasson, C.; Jacob, D. et al.; Vercambre, G.; Gautier, H.; Rolin, D.; Genard, M.; Fernie, A. R.; Gibon, Y.; Moing, A.: Metabolomic profiling in tomato reveals diel compositional changes in fruit affected by source-sink relationships. Journal of Experimental Botany 66 (11), pp. 3391 - 3404 (2015)
  31. 31.
    Journal Article
    Cui, X.; Lv, Y.; Chen, M.; Nikoloski, Z.; Twell, D.; Zhang, D.: Young Genes out of the Male: An Insight from Evolutionary Age Analysis of the Pollen Transcriptome. Molecular Plant 8 (6), pp. 935 - 945 (2015)
  32. 32.
    Journal Article
    Curto, M.; Krajinski, F.; Kuester, H.; Rubiales, D.: Plant Defense Responses in Medicago truncatula Unveiled by Microarray Analysis. PLANT MOLECULAR BIOLOGY REPORTER 33 (3), pp. 569 - 583 (2015)
  33. 33.
    Journal Article
    Ferraro, G.; D'Angelo, M.; Sulpice, R.; Stitt, M.; Valle, E. M.: Reduced levels of NADH-dependent glutamate dehydrogenase decrease the glutamate content of ripe tomato fruit but have no effect on green fruit or leaves. Journal of Experimental Botany 66 (11), pp. 3381 - 3389 (2015)
  34. 34.
    Journal Article
    Sharma, D. K.; Gautam, K.; Jueppner, J.; Giavalisco, P.; Rihko-Struckmann, L.; Pareek, A.; Sundmacher, K.: UPLC-MS analysis of Chlamydomonas reinhardtii and Scenedesmus obliquus lipid extracts and their possible metabolic roles. Journal of applied phycology 27 (3), pp. 1149 - 1159 (2015)
  35. 35.
    Journal Article
    Szymanska, R.; Nowicka, B.; Gabruk, M.; Glinska, S.; Michlewska, S.; Dluzewska, J.; Sawicka, A.; Kruk, J.; Laitinen, R.: Physiological and antioxidant responses of two accessions of Arabidopsis thaliana in different light and temperature conditions. PHYSIOLOGIA PLANTARUM 154 (2), pp. 194 - 209 (2015)
  36. 36.
    Journal Article
    Zabala, M. d. T.; Littlejohn, G.; Jayaraman, S.; Studholme, D.; Bailey, T.; Lawson, T.; Tillich, M.; Licht, D.; Boelter, B.; Delfino, L. et al.; Truman, W.; Mansfield, J.; Smirnoff, N.; Grant, M.: Chloroplasts play a central role in plant defence and are targeted by pathogen effectors. Nature Plants 1, 15074 (2015)
  37. 37.
    Journal Article
    Kanzleiter, T.; Jaehnert, M.; Schulze, G.; Selbig, J.; Hallahan, N.; Schwenk, R. W.; Schuermann, A.: Exercise training alters DNA methylation patterns in genes related to muscle growth and differentiation in mice. American Journal of Physiology-Endocrinology and Metabolism 308 (10), pp. E912 - E920 (2015)
  38. 38.
    Journal Article
    Chew, Y. H.; Wenden, B.; Flis, A.; Mengin, V.; Taylor, J.; Davey, C. L.; Tindal, C.; Thomas, H.; Ougham, H. J.; de Reffye, P. et al.; Stitt, M.; Williams, M.; Muetzelfeldt, R.; Halliday, K. J.; Millar, A. J.: Multiscale digital Arabidopsis predicts individual organ and whole-organism growth (vol 111, pg E4127, 2014). Proceedings of the National Academy of Sciences of the United States of America 112 (19), E2556 (2015)
  39. 39.
    Journal Article
    Haimovich-Dayan, M.; Lieman-Hurwitz, J.; Orf, I.; Hagemann, M.; Kaplan, A.: Does 2-phosphoglycolate serve as an internal signal molecule of inorganic carbon deprivation in the cyanobacterium Synechocystis sp PCC 6803? Environmental Microbiology 17 (5), pp. 1794 - 1804 (2015)
  40. 40.
    Journal Article
    Liu, J.; Zhou, W.; Liu, G.; Yang, C.; Sun, Y.; Wu, W.; Cao, S.; Wang, C.; Hai, G.; Wang, Z. et al.; Bock, R.; Huang, J.; Cheng, Y.: The Conserved Endoribonuclease YbeY Is Required for Chloroplast Ribosomal RNA Processing in Arabidopsis. Plant Physiology 168 (1), pp. 205 - 221 (2015)
  41. 41.
    Journal Article
    Meissner, S.; Steinhauser, D.; Dittmann, E.: Metabolomic analysis indicates a pivotal role of the hepatotoxin microcystin in high light adaptation of Microcystis. Environmental Microbiology 17 (5), pp. 1497 - 1509 (2015)
  42. 42.
    Journal Article
    Perez-Sancho, J.; Vanneste, S.; Lee, E.; McFarlane, H. E.; Esteban del Valle, A.; Valpuesta, V.; Friml, J.; Botella, M. A.; Rosado, A.: The Arabidopsis Synaptotagmin1 Is Enriched in Endoplasmic Reticulum-Plasma Membrane Contact Sites and Confers Cellular Resistance to Mechanical Stresses. Plant Physiology 168 (1), pp. 132 - 143 (2015)
  43. 43.
    Journal Article
    Piazza, A.; Zimaro, T.; Garavaglia, B. S.; Ficarra, F. A.; Thomas, L.; Marondedze, C.; Feil, R.; Lunn, J. E.; Gehring, C.; Ottado, J. et al.; Gottig, N.: The dual nature of trehalose in citrus canker disease: a virulence factor for Xanthomonas citri subsp citri and a trigger for plant defence responses. Journal of Experimental Botany 66 (9), pp. 2795 - 2811 (2015)
  44. 44.
    Journal Article
    Schöttler, M. A.; Toth, S. Z.; Boulouis, A.; Kahlau, S.: Photosynthetic complex stoichiometry dynamics in higher plants: biogenesis, function, and turnover of ATP synthase and the cytochrome b(6)f complex. Journal of Experimental Botany 66 (9), pp. 2373 - 2400 (2015)
  45. 45.
    Journal Article
    Agren, J. A.; Greiner, S.; Johnson, M. T. J.; Wright, S. I.: No evidence that sex and transposable elements drive genome size variation in evening primroses. Evolution 69 (4), pp. 1053 - 1062 (2015)
  46. 46.
    Journal Article
    Agudelo-Romero, P.; Erban, A.; Rego, C.; Carbonell-Bejerano, P.; Nascimento, T.; Sousa, L.; Martinez-Zapater, J. M.; Kopka, J.; Fortes, A. M.: Transcriptome and metabolome reprogramming in Vitis vinifera cv. Trincadeira berries upon infection with Botrytis cinerea. Journal of Experimental Botany 66 (7), pp. 1769 - 1785 (2015)
  47. 47.
    Journal Article
    Dobon, A.; Vicente Canet, J.; Garcia-Andrade, J.; Angulo, C.; Neumetzler, L.; Persson, S.; Vera, P.: Novel Disease Susceptibility Factors for Fungal Necrotrophic Pathogens in Arabidopsis. PLoS Pathogens 11 (4), 1004800 (2015)
  48. 48.
    Journal Article
    Hollister, J. D.; Greiner, S.; Wang, W.; Wang, J.; Zhang, Y.; Wong, G. K.-S.; Wright, S. I.; Johnson, M. T. J.: Recurrent Loss of Sex Is Associated with Accumulation of Deleterious Mutations in Oenothera. Molecular Biology and Evolution 32 (4), pp. 896 - 905 (2015)
  49. 49.
    Journal Article
    Richter, J. A.; Erban, A.; Kopka, J.; Zoerb, C.: Metabolic contribution to salt stress in two maize hybrids with contrasting resistance. Plant Science 233, pp. 107 - 115 (2015)
  50. 50.
    Journal Article
    Scotti, N.; Sannino, L.; Idoine, A.; Hamman, P.; De Stradis, A.; Giorio, P.; Marechal-Drouard, L.; Bock, R.; Cardi, T.: The HIV-1 Pr55(gag) polyprotein binds to plastidial membranes and leads to severe impairment of chloroplast biogenesis and seedling lethality in transplastomic tobacco plants. Transgenic Research 24 (2), pp. 319 - 331 (2015)
 
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