Publications of the institute

Journal Article (171)

1.
Journal Article
Gutjahr, C.; Gobbato, E.; Choi, J.; Riemann, M.; Johnston, M.; Summers, W.; Carbonnel, S.; Mansfield, C.; Yang, S.; Nadal, M. et al.; Acosta, I.; Takano, M.; Jiao, W.; Schneeberger, K.; Kelly, K.; Paszkowski, U.: Rice perception of symbiotic arbuscular mycorrhizal fungi requires the karrikin receptor complex. Science 350 (6267), pp. 1521 - 1524 (2015)
2.
Journal Article
Salek, R. M.; Neumann, S.; Schober, D.; Hummel, J.; Billiau, K.; Kopka, J.; Correa, E.; Reijmers, T.; Rosato, A.; Tenori, L. et al.; Turano, P.; Marin, S.; Deborde, C.; Jacob, D.; Rolin, D.; Dartigues, B.; Conesa, P.; Haug, K.; Rocca-Serra, P.; O'Hagan, S.; Hao, J.; Vliet, M. v.; Sysi-Aho, M.; Ludwig, C.; Bouwman, J.; Cascante, M.; Ebbels, T.; Griffin, J. L.; Moing, A.; Nikolski, M.; Oresic, M.; Sansone, S.-A.; Viant, M. R.; Goodacre, R.; Guenther, U. L.; Hankemeier, T.; Luchinat, C.; Walther, D.; Steinbeck, C.: COordination of Standards in MetabOlomicS (COSMOS): facilitating integrated metabolomics data access. Metabolomics 11 (6), pp. 1587 - 1597 (2015)
3.
Journal Article
Bunik, V. I.; Artiukhov, A.; Kazantsev, A.; Goncalves, R.; Daloso, D. M.; Oppermann, H.; Kulakovskaya, E.; Lukashev, N.; Fernie, A. R.; Brand, M. et al.; Gaunitz, F.: Specific inhibition by synthetic analogs of pyruvate reveals that the pyruvate dehydrogenase reaction is essential for metabolism and viability of glioblastoma cells. Oncotarget 6 (37), pp. 40036 - 40052 (2015)
4.
Journal Article
Bordag, N.; Klie, S.; Juerchott, K.; Vierheller, J.; Schiewe, H.; Albrecht, V.; Tonn, J.-C.; Schwartz, C.; Schichor, C.; Selbig, J.: Glucocorticoid (dexamethasone)-induced metabolome changes in healthy males suggest prediction of response and side effects. Scientific Reports 5, 15954 (2015)
5.
Journal Article
Barahimipour, R.; Strenkert, D.; Neupert, J.; Schroda, M.; Merchant, S. S.; Bock, R.: Dissecting the contributions of GC content and codon usage to gene expression in the model alga Chlamydomonas reinhardtii. The Plant Journal 84 (4), pp. 704 - 717 (2015)
6.
Journal Article
Daloso, D. M.; Antunes, W. C.; Pinheiro, D. P.; Waquim, J. P.; Araujo, W. L.; Loureiro, M. E.; Fernie, A. R.; Williams, T. C. R.: Tobacco guard cells fix CO2 by both Rubisco and PEPcase while sucrose acts as a substrate during light-induced stomatal opening. Plant, Cell and Environment 38 (11), pp. 2353 - 2371 (2015)
7.
Journal Article
Liang, C.; Zhang, Y.; Cheng, S.; Osorio, S.; Sun, Y.; Fernie, A. R.; Cheung, C. Y. M.; Lim, B. L.: Impacts of high ATP supply from chloroplasts and mitochondria on the leaf metabolism of Arabidopsis thaliana. Frontiers in Plant Science 6, 922 (2015)
8.
Journal Article
Koehler, G.; Rohloff, J.; Wilson, R. C.; Kopka, J.; Erban, A.; Winge, P.; Bones, A. M.; Davik, J.; Alsheikh, M. K.; Randall, S. K.: Integrative "omic" analysis reveals distinctive cold responses in leaves and roots of strawberry, Fragaria x ananassa 'Korona'. Frontiers in Plant Science 6, 826 (2015)
9.
Journal Article
Schneider, R.; Persson, S.: Another brick in the wall. Science 350 (6257), pp. 156 - 157 (2015)
10.
Journal Article
Watanabe, Y.; Meents, M. J.; McDonnell, L. M.; Barkwill, S.; Sampathkumar, A.; Cartwright, H. N.; Demura, T.; Ehrhardt, D. W.; Samuels, A. L.; Mansfield, S. D.: Visualization of cellulose synthases in Arabidopsis secondary cell walls. Science 350 (6257), pp. 198 - 203 (2015)
11.
Journal Article
Hameed, M. W.; Aziz, U.-D.: An Improved, Simple, Inexpensive and Highly Flexible Hydroponic Setup For Root Mitochondria Isolation from Arabidopsis and Nicotiana Plants. Pakistan Journal of Botany 47 (5), pp. 2037 - 2043 (2015)
12.
Journal Article
Monne, M.; Miniero, D. V.; Obata, T.; Daddabbo, L.; Palmieri, L.; Vozza, A.; Nicolardi, M. C.; Fernie, A. R.; Palmieri, F.: Functional characterization and organ distribution of three mitochondrial ATP-Mg/P-i carriers in Arabidopsis thaliana. Biochimica et Biophysica Acta-Bioenergetics 1847 (10), pp. 1220 - 1230 (2015)
13.
Journal Article
Batushansky, A.; Kirma, M.; Grillich, N.; Pham, P. A.; Rentsch, D.; Galili, G.; Fernie, A. R.; Fait, A.: The transporter GAT1 plays an important role in GABA-mediated carbon-nitrogen interactions in Arabidopsis. Frontiers in Plant Science 6, 785 (2015)
14.
Journal Article
Poust, S.; Piety, J.; Bar-Even, A.; Louw, C.; Baker, D.; Keasling, J. D.; Siegel, J. B.: Mechanistic Analysis of an Engineered Enzyme that Catalyzes the Formose Reaction. Chembiochem 16 (13), pp. 1950 - 1954 (2015)
15.
Journal Article
Rosado-Souza, L.; Scossa, F.; Chaves, I. S.; Kleessen, S.; Salvador, L. F. D.; Milagre, J. C.; Finger, F.; Bhering, L. L.; Sulpice, R.; Araujo, W. L. et al.; Nikoloski, Z.; Fernie, A. R.; Nunes-Nesi, A.: Exploring natural variation of photosynthetic, primary metabolism and growth parameters in a large panel of Capsicum chinense accessions. Planta 242 (3), pp. 677 - 691 (2015)
16.
Journal Article
Colling, J.; Tohge, T.; De Clercq, R.; Brunoud, G.; Vernoux, T.; Fernie, A. R.; Makunga, N. P.; Goossens, A.; Pauwels, L.: Overexpression of the Arabidopsis thaliana signalling peptide TAXIMIN1 affects lateral organ development. Journal of Experimental Botany 66 (17), pp. 5337 - 5349 (2015)
17.
Journal Article
Kuehn, K.; Obata, T.; Feher, K.; Bock, R.; Fernie, A. R.; Meyer, E. H.: Complete Mitochondrial Complex I Deficiency Induces an Up-Regulation of Respiratory Fluxes That Is Abolished by Traces of Functional Complex I. Plant Physiology 168 (4), pp. 1537 - 1549 (2015)
18.
Journal Article
Schulz, E.; Tohge, T.; Zuther, E.; Fernie, A. R.; Hincha, D. K.: Natural variation in flavonol and anthocyanin metabolism during cold acclimation in Arabidopsis thaliana accessions. Plant, Cell and Environment 38 (8), pp. 1658 - 1672 (2015)
19.
Journal Article
Ort, D. R.; Merchant, S. S.; Alric, J.; Barkan, A.; Blankenship, R. E.; Bock, R.; Croce, R.; Hanson, M. R.; Hibberd, J. M.; Long, S. P. et al.; Moore, T. A.; Moroney, J.; Niyogi, K. K.; Parry, M. A. J.; Peralta-Yahya, P. P.; Prince, R. C.; Redding, K. E.; Spalding, M. H.; van Wijk, K. J.; Vermaas, W. F. J.; von Caemmerer, S.; Weber, A. P. M.; Yeates, T. O.; Yuan, J. S.; Zhu, X. G.: Redesigning photosynthesis to sustainably meet global food and bioenergy demand. Proceedings of the National Academy of Sciences of the United States of America 112 (28), pp. 8529 - 8536 (2015)
20.
Journal Article
Curto, M.; Krajinski, F.; Schlereth, A.; Rubiales, D.: Transcriptional profiling of Medicago truncatula during Erysiphe pisi infection. Frontiers in Plant Science 6, 517 (2015)
21.
Journal Article
Arrivault, S.; Guenther, M.; Fry, S. C.; Fünfgeld, M. F.F.; Veye, D.; Mettler-Altmann, T.; Stitt, M.; Lunn, J. E.: Synthesis and Use of Stable-Isotope-Labeled Internal Standards for Quantification of Phosphorylated Metabolites by LC-MS/MS. Analytical Chemistry 87 (13), pp. 6896 - 6904 (2015)
22.
Journal Article
Omidbakhshfard, M. A.; Proost, S.; Fujikura, U.; Mueller-Roeber, B.: Growth-Regulating Factors (GRFs): A Small Transcription Factor Family with Important Functions in Plant Biology. Molecular Plant 8 (7), pp. 998 - 1010 (2015)
23.
Journal Article
Bui, L. T.; Giuntoli, B.; Kosmacz, M.; Parlanti, S.; Licausi, F.: Constitutively expressed ERF-VII transcription factors redundantly activate the core anaerobic response in Arabidopsis thaliana. Plant Science 236, pp. 37 - 43 (2015)
24.
Journal Article
Dyson, B. C.; Allwood, J. W.; Feil, R.; Xu, Y.; Miller, M.; Bowsher, C. G.; Goodacre, R.; Lunn, J. E.; Johnson, G. N.: Acclimation of metabolism to light in Arabidopsis thaliana: the glucose 6-phosphate/phosphate translocator GPT2 directs metabolic acclimation. Plant, Cell and Environment 38 (7), pp. 1404 - 1417 (2015)
25.
Journal Article
Timm, S.; Wittmiss, M.; Gamlien, S.; Ewald, R.; Florian, A.; Frank, M.; Wirtz, M.; Hell, R.; Fernie, A. R.; Bauwea, H.: Mitochondrial Dihydrolipoyl Dehydrogenase Activity Shapes Photosynthesis and Photorespiration of Arabidopsis thaliana. Plant Cell 27 (7), pp. 1968 - 1984 (2015)
26.
Journal Article
Xu, E.; Vaahtera, L.; Horak, H.; Hincha, D. K.; Heyer, A. G.; Brosche, M.: Quantitative trait loci mapping and transcriptome analysis reveal candidate genes regulating the response to ozone in Arabidopsis thaliana. Plant, Cell and Environment 38 (7), pp. 1418 - 1433 (2015)
27.
Journal Article
Barbier, F. F.; Lunn, J. E.; Beveridge, C. A.: Ready, steady, go! A sugar hit starts the race to shoot branching. Current Opinion in Plant Biology 25, pp. 39 - 45 (2015)
28.
Journal Article
Benard, C.; Bernillon, S.; Biais, B.; Osorio, S.; Maucourt, M.; Ballias, P.; Deborde, C.; Colombie, S.; Cabasson, C.; Jacob, D. et al.; Vercambre, G.; Gautier, H.; Rolin, D.; Genard, M.; Fernie, A. R.; Gibon, Y.; Moing, A.: Metabolomic profiling in tomato reveals diel compositional changes in fruit affected by source-sink relationships. Journal of Experimental Botany 66 (11), pp. 3391 - 3404 (2015)
29.
Journal Article
Cui, X.; Lv, Y.; Chen, M.; Nikoloski, Z.; Twell, D.; Zhang, D.: Young Genes out of the Male: An Insight from Evolutionary Age Analysis of the Pollen Transcriptome. Molecular Plant 8 (6), pp. 935 - 945 (2015)
30.
Journal Article
Curto, M.; Krajinski, F.; Kuester, H.; Rubiales, D.: Plant Defense Responses in Medicago truncatula Unveiled by Microarray Analysis. Plant Molecular Biology Reporter 33 (3), pp. 569 - 583 (2015)
31.
Journal Article
Ferraro, G.; D'Angelo, M.; Sulpice, R.; Stitt, M.; Valle, E. M.: Reduced levels of NADH-dependent glutamate dehydrogenase decrease the glutamate content of ripe tomato fruit but have no effect on green fruit or leaves. Journal of Experimental Botany 66 (11), pp. 3381 - 3389 (2015)
32.
Journal Article
Sharma, D. K.; Gautam, K.; Jueppner, J.; Giavalisco, P.; Rihko-Struckmann, L.; Pareek, A.; Sundmacher, K.: UPLC-MS analysis of Chlamydomonas reinhardtii and Scenedesmus obliquus lipid extracts and their possible metabolic roles. Journal of applied phycology 27 (3), pp. 1149 - 1159 (2015)
33.
Journal Article
Szymanska, R.; Nowicka, B.; Gabruk, M.; Glinska, S.; Michlewska, S.; Dluzewska, J.; Sawicka, A.; Kruk, J.; Laitinen, R.: Physiological and antioxidant responses of two accessions of Arabidopsis thaliana in different light and temperature conditions. Physiologia Plantarum 154 (2), pp. 194 - 209 (2015)
34.
Journal Article
Zabala, M. d. T.; Littlejohn, G.; Jayaraman, S.; Studholme, D.; Bailey, T.; Lawson, T.; Tillich, M.; Licht, D.; Boelter, B.; Delfino, L. et al.; Truman, W.; Mansfield, J.; Smirnoff, N.; Grant, M.: Chloroplasts play a central role in plant defence and are targeted by pathogen effectors. Nature Plants 1, 15074 (2015)
35.
Journal Article
Kanzleiter, T.; Jaehnert, M.; Schulze, G.; Selbig, J.; Hallahan, N.; Schwenk, R. W.; Schuermann, A.: Exercise training alters DNA methylation patterns in genes related to muscle growth and differentiation in mice. American Journal of Physiology-Endocrinology and Metabolism 308 (10), pp. E912 - E920 (2015)
36.
Journal Article
Gutjahr, C.; Sawers, R.; Marti, G.; Andres-Hernandez, L.; Yang, S.; Casieri, L.; Angliker, H.; Oakeley, E.; Wolfender, J.; Abreu-Goodger, C. et al.; Paszkowski, U.: Transcriptome diversity among rice root types during asymbiosis and interaction with arbuscular mycorrhizal fungi. Proceedings of the National Academy of Sciences of the United States of America 112 (21), pp. 6754 - 6759 (2015)
37.
Journal Article
Haimovich-Dayan, M.; Lieman-Hurwitz, J.; Orf, I.; Hagemann, M.; Kaplan, A.: Does 2-phosphoglycolate serve as an internal signal molecule of inorganic carbon deprivation in the cyanobacterium Synechocystis sp PCC 6803? Environmental Microbiology 17 (5), pp. 1794 - 1804 (2015)
38.
Journal Article
Liu, J.; Zhou, W.; Liu, G.; Yang, C.; Sun, Y.; Wu, W.; Cao, S.; Wang, C.; Hai, G.; Wang, Z. et al.; Bock, R.; Huang, J.; Cheng, Y.: The Conserved Endoribonuclease YbeY Is Required for Chloroplast Ribosomal RNA Processing in Arabidopsis. Plant Physiology 168 (1), pp. 205 - 221 (2015)
39.
Journal Article
Meissner, S.; Steinhauser, D.; Dittmann, E.: Metabolomic analysis indicates a pivotal role of the hepatotoxin microcystin in high light adaptation of Microcystis. Environmental Microbiology 17 (5), pp. 1497 - 1509 (2015)
40.
Journal Article
Perez-Sancho, J.; Vanneste, S.; Lee, E.; McFarlane, H. E.; Esteban del Valle, A.; Valpuesta, V.; Friml, J.; Botella, M. A.; Rosado, A.: The Arabidopsis Synaptotagmin1 Is Enriched in Endoplasmic Reticulum-Plasma Membrane Contact Sites and Confers Cellular Resistance to Mechanical Stresses. Plant Physiology 168 (1), pp. 132 - 143 (2015)
41.
Journal Article
Piazza, A.; Zimaro, T.; Garavaglia, B. S.; Ficarra, F. A.; Thomas, L.; Marondedze, C.; Feil, R.; Lunn, J. E.; Gehring, C.; Ottado, J. et al.; Gottig, N.: The dual nature of trehalose in citrus canker disease: a virulence factor for Xanthomonas citri subsp citri and a trigger for plant defence responses. Journal of Experimental Botany 66 (9), pp. 2795 - 2811 (2015)
42.
Journal Article
Schöttler, M. A.; Toth, S. Z.; Boulouis, A.; Kahlau, S.: Photosynthetic complex stoichiometry dynamics in higher plants: biogenesis, function, and turnover of ATP synthase and the cytochrome b(6)f complex. Journal of Experimental Botany 66 (9), pp. 2373 - 2400 (2015)
43.
Journal Article
Agren, J. A.; Greiner, S.; Johnson, M. T. J.; Wright, S. I.: No evidence that sex and transposable elements drive genome size variation in evening primroses. Evolution 69 (4), pp. 1053 - 1062 (2015)
44.
Journal Article
Agudelo-Romero, P.; Erban, A.; Rego, C.; Carbonell-Bejerano, P.; Nascimento, T.; Sousa, L.; Martinez-Zapater, J. M.; Kopka, J.; Fortes, A. M.: Transcriptome and metabolome reprogramming in Vitis vinifera cv. Trincadeira berries upon infection with Botrytis cinerea. Journal of Experimental Botany 66 (7), pp. 1769 - 1785 (2015)
45.
Journal Article
Dobon, A.; Vicente Canet, J.; Garcia-Andrade, J.; Angulo, C.; Neumetzler, L.; Persson, S.; Vera, P.: Novel Disease Susceptibility Factors for Fungal Necrotrophic Pathogens in Arabidopsis. PLoS Pathogens 11 (4), 1004800 (2015)
46.
Journal Article
Hollister, J. D.; Greiner, S.; Wang, W.; Wang, J.; Zhang, Y.; Wong, G. K.-S.; Wright, S. I.; Johnson, M. T. J.: Recurrent Loss of Sex Is Associated with Accumulation of Deleterious Mutations in Oenothera. Molecular Biology and Evolution 32 (4), pp. 896 - 905 (2015)
47.
Journal Article
Richter, J. A.; Erban, A.; Kopka, J.; Zoerb, C.: Metabolic contribution to salt stress in two maize hybrids with contrasting resistance. Plant Science 233, pp. 107 - 115 (2015)
48.
Journal Article
Scotti, N.; Sannino, L.; Idoine, A.; Hamman, P.; De Stradis, A.; Giorio, P.; Marechal-Drouard, L.; Bock, R.; Cardi, T.: The HIV-1 Pr55(gag) polyprotein binds to plastidial membranes and leads to severe impairment of chloroplast biogenesis and seedling lethality in transplastomic tobacco plants. Transgenic Research 24 (2), pp. 319 - 331 (2015)
49.
Journal Article
Siegel, J. B.; Smith, A. L.; Poust, S.; Wargacki, A. J.; Bar-Even, A.; Louw, C.; Shen, B. W.; Eiben, C. B.; Tran, H. M.; Noor, E. et al.; Gallaher, J. L.; Bale, J.; Yoshikuni, Y.; Gelb, M. H.; Keasling, J. D.; Stoddard, B. L.; Lidstrom, M. E.; Baker, D.: Computational protein design enables a novel one-carbon assimilation pathway. Proceedings of the National Academy of Sciences of the United States of America 112 (12), pp. 3704 - 3709 (2015)
50.
Journal Article
Thieme, C. J.; Rojas-Triana, M.; Stecyk, E.; Schudoma, C.; Zhang, W.; Yang, L.; Minambres, M.; Walther, D.; Schulze, W. X.; Paz-Ares, J. et al.; Scheible, W.-R.; Kragler, F.: Endogenous Arabidopsis messenger RNAs transported to distant tissues. Nature Plants 1, 15025 (2015)
Go to Editor View