Publications of the institute

Journal Article (208)

1.
Journal Article
Armarego-Marriott, T.; Sandoval-Ibanez, O.; Kowalewska, Ł.: Beyond the darkness: recent lessons from etiolation and de-etiolation studies. Journal of Experimental Botany 71 (4), pp. 1215 - 1225 (2019)
2.
Journal Article
Domingues Júnior, A.P.; Daloso, D. M.; Machado, M.; Rosado-Souza, L.; de Souza, L. P.; Fernie, A. R.; Mazzafera, P.: A cold change: how short low temperature exposure affects primary metabolism in leaves and stems of two eucalyptus species. Theoretical and Experimental Plant Physiology 31 (4), pp. 429 - 444 (2019)
3.
Journal Article
Condori-Apfata, J. A.; Batista-Silva, W.; Medeiros, D. B.; Vargas, J. R.; Valente, L. M. L.; Heyneke, E.; Pérez-Diaz, J. L.; Fernie, A. R.; Araújo, W. L.; Nunes-Nesi, A.: The Arabidopsis E1 subunit of the 2-oxoglutarate dehydrogenase complex modulates plant growth and seed production. Plant Molecular Biology 101 (1), pp. 183 - 202 (2019)
4.
Journal Article
Lawas, L.M.F.; Erban, A.; Kopka, J.; Jagadish, S. V. K.; Zuther, E.; Hincha, D. K.: Metabolic responses of rice source and sink organs during recovery from combined drought and heat stress in the field. GigaScience 8 (8), giz102 (2019)
5.
Journal Article
Watanabe, M.; Hoefgen, R.: Sulphur systems biology—making sense of omics data. Journal of Experimental Botany 70 (16), pp. 4155 - 4170 (2019)
6.
Journal Article
Gago, J.; Carriquí, M.; Nadal, M.; Clemente-Moreno, M. J.; Coopman, R. E.; Fernie, A. R.; Flexas, J.: Photosynthesis Optimized across Land Plant Phylogeny. Trends in Plant Science 24 (10), pp. 947 - 958 (2019)
7.
Journal Article
Li, K.; Wen, W.; Alseekh, S.; Yang, X.; Guo, H.; Li, W.; Wang, L.; Pan, Q.; Zhan, W.; Liu, J. et al.; Li, Y.; Wu, X.; Brotman, Y.; Willmitzer, L.; Li, J.; Fernie, A. R.; Yan, J.: Large-scale metabolite quantitative trait locus analysis provides new insights for high-quality maize improvement. The Plant Journal 99 (2), pp. 216 - 230 (2019)
8.
Journal Article
Liu, T.-Y.; Chen, M.-X.; Zhang, Y.; Zhu, F.-Y.; Liu, Y.-G.; Tian, Y.; Fernie, A. R.; Ye, N.; Zhang, J.: Comparative metabolite profiling of two switchgrass ecotypes reveals differences in drought stress responses and rhizosheath weight. Planta 250 (4), pp. 1355 - 1369 (2019)
9.
Journal Article
van Eerde, A.; Gottschamel, J.; Bock, R.; Hansen, K. E. A.; Munang'andu, H. M.; Daniell, H.; Liu Clarke, J.: Production of tetravalent dengue virus envelope protein domain III based antigens in lettuce chloroplasts and immunologic analysis for future oral vaccine development. Plant Biotechnology Journal 17 (7), pp. 1408 - 1417 (2019)
10.
Journal Article
Lawas, L.M.F.; Li, X.; Erban, A.; Kopka, J.; Jagadish, S. V. K.; Zuther, E.; Hincha, D. K.: Metabolic responses of rice cultivars with different tolerance to combined drought and heat stress under field conditions. GigaScience 8 (5), giz050 (2019)
11.
Journal Article
Li, Z.; Bock, R.: Rapid functional activation of a horizontally transferred eukaryotic gene in a bacterial genome in the absence of selection. Nucleic Acids Research 47 (12), pp. 6351 - 6359 (2019)
12.
Journal Article
Ceusters, N.; Luca, S.; Feil, R.; Claes, J. E.; Lunn, J. E.; Van den Ende, W.; Ceusters, J.: Hierarchical clustering reveals unique features in the diel dynamics of metabolites in the CAM orchid Phalaenopsis. Journal of Experimental Botany 70 (12), pp. 3269 - 3281 (2019)
13.
Journal Article
Greiner, S.; Lehwark, P.; Bock, R.: OrganellarGenomeDRAW (OGDRAW) version 1.3.1: expanded toolkit for the graphical visualization of organellar genomes. Nucleic Acids Research 47 (W1), pp. W59 - W64 (2019)
14.
Journal Article
Liang, Y.; Kong, F.; Torres-Romero, I.; Burlacot, A.; Cuine, S.; Légeret, B.; Billon, E.; Brotman, Y.; Alseekh, S.; Fernie, A. R. et al.; Beisson, F.; Peltier, G.; Li-Beisson, Y.: Branched-Chain Amino Acid Catabolism Impacts Triacylglycerol Homeostasis in Chlamydomonas reinhardtii. Plant Physiology 179 (4), pp. 1502 - 1514 (2019)
15.
Journal Article
Moraes, T. A.; Mengin, V.; Annunziata, M. G.; Encke, B.; Krohn, N.; Höhne, M.; Stitt, M.: Response of the Circadian Clock and Diel Starch Turnover to One Day of Low Light or Low CO2. Plant Physiology 179 (4), pp. 1457 - 1478 (2019)
16.
Journal Article
Arrivault, S.; Moraes, T. A.; Obata, T.; Medeiros, D.B.; Fernie, A. R.; Boulouis, A.; Ludwig, M.; Lunn, J. E.; Borghi, G.L.; Schlereth, A. et al.; Guenther, M.; Stitt, M.: Metabolite profiles reveal interspecific variation in operation of the Calvin–Benson cycle in both C4 and C3 plants. Journal of Experimental Botany 70 (6), pp. 1843 - 1858 (2019)
17.
Journal Article
de Souza, L. P.; Scossa, F.; Proost, S.; Bitocchi, E.; Papa, R.; Tohge, T.; Fernie, A. R.: Multi-tissue integration of transcriptomic and specialized metabolite profiling provides tools for assessing the common bean (Phaseolus vulgaris) metabolome. The Plant Journal 97 (6), pp. 1132 - 1153 (2019)
18.
Journal Article
Fernie, A. R.: Resolving the role of strigolactone in the early steps of rice axillary bud dormancy. The Plant Journal 97 (6), pp. 1003 - 1005 (2019)
19.
Journal Article
Tabatabaei, I.; Dal Bosco, C.; Bednarska, M.; Ruf, S.; Meurer, J.; Bock, R.: A highly efficient sulfadiazine selection system for the generation of transgenic plants and algae. Plant Biotechnology Journal 17 (3), pp. 638 - 649 (2019)
20.
Journal Article
Al-Aama, J.; Al Mahdi, H. B.; Salama, M. A.; Bakur, K.; Alhozali, A.; Mosli, H.; Bahijri, S. M.; Bahieldin, A.; Elango, R.; Willmitzer, L. et al.; Edris, S.: Rapid detection of type II diabetes mellitus in Saudi patients via simultaneous screening of multiple SNPs. Biotechnology & Biotechnology Equipment 33 (1), pp. 1319 - 1326 (2019)
21.
Journal Article
Al-Aama, J.Y.; Mahdi, H.B.A.; Salama, M.A.; Bakur, K.H.; Alhozali, A.; Mosli, H.H.; Bahijri, S.M.; Bahieldin, A.; Willmitzer, L.; Edris, S.: Detection of secondary metabolites as biomarkers for the early diagnosis and prevention of type 2 diabetes. Diabetes, Metabolic Syndrome and Obesity: Targets and Therapy 12, pp. 2675 - 2684 (2019)
22.
Journal Article
Amthor, J. S.; Bar-Even, A.; Hanson, A. D.; Millar, A. H.; Stitt, M.; Sweetlove, L. J.; Tyerman, S. D.: Engineering Strategies to Boost Crop Productivity by Cutting Respiratory Carbon Loss. Plant Cell 31 (2), pp. 297 - 314 (2019)
23.
Journal Article
Angeleska, A.; Nikoloski, Z.: Coherent network partitions. Discrete applied mathematics 266, pp. 283 - 290 (2019)
24.
Journal Article
Annunziata, M. G.: Enhancing Wheat Rubisco Activase Thermostability by Mutagenesis of Conserved Residues from Heat-Adapted Species. Plant Physiology 181 (1), p. 3 (2019)
25.
Journal Article
Annunziata, M. G.: NTRC: A Key Regulatory Hub in Carbon Metabolism and Redox Balance in Developing Tomato Fruits. Plant Physiology 181 (3), pp. 851 - 852 (2019)
26.
Journal Article
Annunziata, M. G.; Ciarmiello, L. F.; Woodrow, P.; Dell'Aversana, E.; Carillo, P.: Spatial and Temporal Profile of Glycine Betaine Accumulation in Plants Under Abiotic Stresses. Frontiers in Plant Science 10, 230 (2019)
27.
Journal Article
Anoman, A. D.; Flores-Tornero, M.; Benstein, R. M.; Blau, S.; Rosa-Tellez, S.; Braeutigam, A.; Fernie, A. R.; Munoz-Bertomeu, J.; Schilasky, S.; Meyer, A. J. et al.; Kopriva, S.; Segura, J.; Krueger, S.; Ros roc, R.: Deficiency in the Phosphorylated Pathway of Serine Biosynthesis Perturbs Sulfur Assimilation. Plant Physiology 180 (1), pp. 153 - 170 (2019)
28.
Journal Article
Armarego-Marriott, T.; Kowalewska, L.; Burgos, A.; Fischer, A.; Thiele, W.; Erban, A.; Strand, D.; Kahlau, S.; Hertle, A. P.; Kopka, J. et al.; Walther, D.; Reich, Z.; Schöttler, M. A.; Bock, R.: Highly Resolved Systems Biology to Dissect the Etioplast-to-Chloroplast Transition in Tobacco Leaves. Plant Physiology 180 (1), pp. 654 - 681 (2019)
29.
Journal Article
Awada, R.; Campa, C.; Gibault, E.; Dechamp, E.; Georget, F.; Lepelley, M.; Abdallah, C.; Erban, A.; Martinez-Seidel, F.; Kopka, J. et al.; Legendre, L.; Leran, S.; Conejero, G.; Verdeil, J.-L.; Crouzillat, D.; Breton, D.; Bertrand, B.; Etienne, H.: Unravelling the Metabolic and Hormonal Machinery During Key Steps of Somatic Embryogenesis: A Case Study in Coffee. International Journal of Molecular Sciences 20 (19), 4665 (2019)
30.
Journal Article
Batista-Silva, W.; Medeiros, D. B.; Rodrigues-Salvador, A.; Daloso, D. M.; Omena-Garcia, R. P.; Oliveira, F. S.; Pino, L. E.; Pereira Peres, L. E.; Nunes-Nesi, A.; Fernie, A. R. et al.; Zsogon, A.; Araujo, W. L.: Modulation of auxin signalling through DIAGETROPICA and ENTIRE differentially affects tomato plant growth via changes in photosynthetic and mitochondrial metabolism. Plant, Cell and Environment 42 (2), pp. 448 - 465 (2019)
31.
Journal Article
Battat, M.; Eitan, A.; Rogachev, I.; Hanhineva, K.; Fernie, A. R.; Tohge, T.; Beekwilder, J.; Aharoni, A.: A MYB Triad Controls Primary and Phenylpropanoid Metabolites for Pollen Coat Patterning. Plant Physiology 180 (1), pp. 87 - 108 (2019)
32.
Journal Article
Bdolach, E.; Prusty, M. R.; Faigenboim-Doron, A.; Filichkin, T.; Helgerson, L.; Schmid, K. J.; Greiner, S.; Fridman, E.: Thermal plasticity of the circadian clock is under nuclear and cytoplasmic control in wild barley. Plant, Cell and Environment 42 (11), pp. 3105 - 3120 (2019)
33.
Journal Article
Belouah, I.; Nazaret, C.; Petriacq, P.; Prigent, S.; Benard, C.; Mengin, V.; Blein-Nicolas, M.; Denton, A. K.; Balliau, T.; Auge, S. et al.; Bouchez, O.; Mazat, J.-P.; Stitt, M.; Usadel, B.; Zivy, M.; Beauvoit, B.; Gibon, Y.; Colombie, S.: Modeling Protein Destiny in Developing Fruit. Plant Physiology 180 (3), pp. 1709 - 1724 (2019)
34.
Journal Article
Ben-Jabeur, M.; Vicente, R.; López-Cristoffanini, C.; Alesami, N.; Djébali, N.; Gracia-Romero, A.; Serret, M. D.; López-Carbonell, M.; Araus, J. L.; Hamada, W.: A Novel Aspect of Essential Oils: Coating Seeds with Thyme Essential Oil induces Drought Resistance in Wheat. Plants 8 (10), 371 (2019)
35.
Journal Article
Beshir, W. F.; Tohge, T.; Watanabe, M.; Hertog, M. L. A. T. M.; Hoefgen, R.; Fernie, A. R.; Nicolaï, B. M.: Non-aqueous fractionation revealed changing subcellular metabolite distribution during apple fruit development. Horticulture Research 6 (1), 98 (2019)
36.
Journal Article
Bock, R.: Engineering Chloroplasts for High-Level Constitutive or Inducible Transgene Expression. Methods in Molecular Biology (accepted)
37.
Journal Article
Boehm, C.R.; Bock, R.: Recent Advances and Current Challenges in Synthetic Biology of the Plastid Genetic System and Metabolism. Plant Physiology 179 (3), pp. 794 - 802 (2019)
38.
Journal Article
Bogusławska, J.; Popławski, P.; Alseekh, S.; Koblowska, M.; Iwanicka-Nowicka, R.; Rybicka, B.; Kędzierska, H.; Głuchowska, K.; Hanusek, K.; Tański, Z. et al.; Fernie, A. R.; Piekiełko-Witkowska, A.: MicroRNA-Mediated Metabolic Reprograming in Renal Cancer. Cancers 11 (12), 1825 (2019)
39.
Journal Article
Borghi, G.L.; Moraes, T. A.; Günther, M.; Feil, R.; Mengin, V.; Lunn, J. E.; Stitt, M.; Arrivault, S.: Relationship between irradiance and levels of Calvin-Benson cycle and other intermediates in the model eudicot Arabidopsis and the model monocot rice. Journal of Experimental Botany 70 (20), pp. 5809 - 5825 (2019)
40.
Journal Article
Borghi, M.; de Souza, L. P.; Yoshida, T.; Fernie, A. R.: Flowers and climate change: a metabolic perspective. New Phytologist 224 (4), pp. 1425 - 1441 (2019)
41.
Journal Article
Bovdilova, A.; Alexandre, B. M.; Höppner, A.; Matias Luis, I.; Alvarez, C. E.; Bickel, D.; Gohlke, H.; Decker, C.; Nagel-Steger, L.; Alseekh, S. et al.; Fernie, A. R.; Drincovich, M. F.; Abreu, I. A.; Maurino, V. G.: Posttranslational modification of the NADP-malic enzyme involved in C4 photosynthesis fine-tunes the enzymatic activity during the day. The Plant Cell 31 (10), pp. 2525 - 2539 (2019)
42.
Journal Article
Bozek, K.; Khrameeva, E. E.; Reznick, J.; Omerbašić, D.; Bennett, N. C.; Lewin, G. R.; Azpurua, J.; Gorbunova, V.; Seluanov, A.; Regnard, P. et al.; Wanert, F.; Marchal, J.; Pifferi, F.; Aujard, F.; Liu, Z.; Shi, P.; Pääbo, S.; Schröder, F.; Willmitzer, L.; Giavalisco, P.; Khaitovich, P.: Publisher Correction: Lipidome determinants of maximal lifespan in mammals. Scientific Reports 9 (1), 6972 (2019)
43.
Journal Article
Brog, Y. M.; Osorio, S.; Yichie, Y.; Alseekh, S.; Bensal, E.; Kochevenko, A.; Zamir, D.; Fernie, A. R.: A Solanum neorickii introgression population providing a powerful complement to the extensively characterized Solanum pennellii population. The Plant Journal 97 (2), pp. 391 - 403 (2019)
44.
Journal Article
Burschel, S.; Kreuzer Decovic, D.; Nuber, F.; Stiller, M.; Hofmann, M.; Zupok, A.; Siemiatkowska, B.; Gorka, M.; Leimkühler, S.; Friedrich, T.: Iron-sulfur cluster carrier proteins involved in the assembly of Escherichia coli NADH:ubiquinone oxidoreductase (complex I). Molecular Microbiology 111 (1), pp. 31 - 45 (2019)
45.
Journal Article
Calabrese, S.; Cusant, L.; Sarazin, A.; Niehl, A.; Erban, A.; Brulé, D.; Recorbet, G.; Wipf, D.; Roux, C.; Kopka, J. et al.; Boller, T.; Courty, P.-E.: Imbalanced regulation of fungal nutrient transports according to phosphate availability in a symbiocosm formed by poplar, sorghum and Rhizophagus irregularis. Frontiers in Plant Science 10, 1617 (2019)
46.
Journal Article
Caldana, C.; Martins, M. C. M.; Mubeen, U.; Urrea-Castellanos, R.: The magic 'hammer' of TOR: the multiple faces of a single pathway in the metabolic regulation of plant growth and development. Journal of Experimental Botany 70 (8), pp. 2217 - 2225 (2019)
47.
Journal Article
Casartelli, A.; Melino, V. J.; Baumann, U.; Riboni, M.; Suchecki, R.; Jayasinghe, N. S.; Mendis, H.; Watanabe, M.; Erban, A.; Zuther, E. et al.; Hoefgen, R.; Roessner, U.; Okamoto, M.; Heuer, S.: Opposite fates of the purine metabolite allantoin under water and nitrogen limitations in bread wheat. Plant Molecular Biology 99 (4-5), pp. 477 - 497 (2019)
48.
Journal Article
Chaves, I. d. S.; Feitosa-Araujo, E.; Florian, A.; Medeiros, D. B.; da Fonseca-Pereira, P.; Charton, L.; Heyneke, E.; Apfata, J. A. C.; Pires V, M.; Mettler-Altmann, T. et al.; Araujo, W. L.; Neuhaus, H. E.; Palmieri, F.; Obata, T.; Weber, A. P. M.; Linka, N.; Fernie, A. R.; Nunes-Nesi, A.: The mitochondrial NAD(+) transporter (NDT1) plays important roles in cellular NAD(+) homeostasis in Arabidopsis thaliana. The Plant Journal 100 (3), pp. 487 - 504 (2019)
49.
Journal Article
Claassens, N. J.; Burgener, S.; Vögeli, B.; Erb, T.J.; Bar-Even, A.: A critical comparison of cellular and cell-free bioproduction systems. Current Opinion in Biotechnology 60, pp. 221 - 229 (2019)
50.
Journal Article
Claassens, N. J.; Cotton, C. A. R.; Kopljar, D.; Bar-Even, A.: Making quantitative sense of electromicrobial production. Nature Catalysis 2 (5), pp. 437 - 447 (2019)
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