Publications of the institute

Journal Article (3786)

1.
Journal Article
Guadalupe Dominguez, P.; Conti, G.; Duffy, T.; Insani, M.; Alseekh, S.; Asurmendi, S.; Fernie, A. R.; Carrari, F.: Multi-omics analyses reveal the roles of the ASR1 transcription factor in tomato fruits. Journal of Experimental Botany (2021)
2.
Journal Article
Eng, R.C.; Schneider, R.; Matz, T.; Carter, R.; Ehrhardt, D. W.; Jönsson, H.; Nikoloski, Z.; Sampathkumar, A.: KATANIN and CLASP function at different spatial scales to mediate microtubule response to mechanical stress in Arabidopsis cotyledons. Current Biology (2021)
3.
Journal Article
Zupok, A.; Kozul, D.; Schöttler, M. A.; Niehörster, J.; Garbsch, F.; Liere, K.; Fischer, A.; Zoschke, R.; Malinova, I.; Bock, R. et al.; Greiner, S.: A photosynthesis operon in the chloroplast genome drives speciation in evening primroses. The Plant Cell (2021)
4.
Journal Article
Ancín, M.; Larraya, L.; Florez-Sarasa, I. D.; Bénard, C.; Fernández-San Millán, A.; Veramendi, J.; Gibon, Y.; Fernie, A. R.; Aranjuelo, I.; Farran, I.: Thioredoxin m overexpression in chloroplasts alters carbon and nitrogen partitioning in tobacco plants. Journal of Experimental Botany (2021)
5.
Journal Article
Ann DeTar, R.; Barahimipour, R.; Manavski, N.; Schwenkert, S.; Höhner, R.; Bölter, B.; Inaba, T.; Meurer, J.; Zoschke, R.; Kunz, H.-H.: Loss of inner-envelope K+/H+ exchangers impairs plastid rRNA maturation and gene expression. The Plant Cell (2021)
6.
Journal Article
Zimmermann, S. E.; Benstein, R. M.; Flores-Tornero, M.; Blau, S.; Anoman, A. D.; Rosa-Téllez, S.; Gerlich, S. C.; Salem, M.A.; Alseekh, S.; Kopriva, S. et al.; Wewer, V.; Flügge, U.-I.; Jacoby, R. P.; Fernie, A. R.; Giavalisco, P.; Ros, R.; Krueger, S.: The phosphorylated pathway of serine biosynthesis links plant growth with nitrogen metabolism. Plant Physiology (2021)
7.
Journal Article
de Souza, L. P.; Alseekh, S.; Scossa, F.; Fernie, A. R.: Ultra-high-performance liquid chromatography high-resolution mass spectrometry variants for metabolomics research. Nature Methods (2021)
8.
Journal Article
Wang, Z.; Butel, N.; Santos-González, J.; Simon, L.; Wärdig, C.; Köhler, C.: Transgenerational effect of mutants in the RNA-directed DNA methylation pathway on the triploid block in Arabidopsis. Genome Biology 22 (1), 141 (2021)
9.
Journal Article
Borghi, M.; Fernie, A. R.: From flowers to seeds: how the metabolism of flowers frames plant reproduction. The biochemist: the bulletin of the Biochemical Society 43 (3), pp. 14 - 18 (2021)
10.
Journal Article
Cortinovis, G.; Oppermann, M.; Neumann, K.; Graner, A.; Gioia, T.; Marsella, M.; Alseekh, S.; Fernie, A. R.; Papa, R.; Bellucci, E. et al.; Bitocchi, E.: Towards the Development, Maintenance, and Standardized Phenotypic Characterization of Single-Seed-Descent Genetic Resources for Common Bean. Current Protocols in Plant Biology 1 (5), e133 (2021)
11.
Journal Article
Dobrica, M.-O.; van Eerde, A.; Tucureanu, C.; Onu, A.; Paruch, L.; Caras, I.; Vlase, E.; Steen, H.; Haugslien, S.; Alonzi, D. et al.; Zitzmann, N.; Bock, R.; Dubuisson, J.; Popescu, C.-I.; Stavaru, C.; Liu Clarke, J.; Branza-Nichita, N.: Hepatitis C virus E2 envelope glycoprotein produced in Nicotiana benthamiana triggers humoral response with virus-neutralizing activity in vaccinated mice. Plant Biotechnology Journal (2021)
12.
Journal Article
Ishihara, H.; Moraes, T. A.; Arrivault, S.; Stitt, M.: Assessing Protein Synthesis and Degradation Rates in Arabidopsis thaliana Using Amino Acid Analysis. Current Protocols 1 (5), e114 (2021)
13.
Journal Article
Viana, A. J. C.; Matiolli, C. C.; Newman, D. W.; Vieira, J. G. P.; Duarte, G. T.; Martins, M. C. M.; Gilbault, E.; Hotta, C. T.; Caldana, C.; Vincentz, M.: The sugar-responsive circadian clock regulator bZIP63 modulates plant growth. New Phytologist (2021)
14.
Journal Article
Yadav, V. K.; Santos-González, J.; Köhler, C.: INT-Hi-C reveals distinct chromatin architecture in endosperm and leaf tissues of Arabidopsis. Nucleic Acids Research 49 (8), pp. 4371 - 4385 (2021)
15.
Journal Article
Fernie, A. R.: Associating primary and specialized metabolism with salt induced osmotic stress tolerance in maize. New Phytologist 230 (6), pp. 2991 - 2093 (2021)
16.
Journal Article
Zhang, Y.; Giese, J.; Kerbler, S.M.-L.; Siemiatkowska, B.; de Souza, L. P.; Alpers, J.; Medeiros, D.B.; Hincha, D. K.; Daloso, D. M.; Stitt, M. et al.; Finkemeier, I.; Fernie, A. R.: Two mitochondrial phosphatases, PP2c63 and Sal2, are required for posttranslational regulation of the TCA cycle in Arabidopsis. Molecular Plant (2021)
17.
Journal Article
Wu, G.; Bock, R.: GUN control in retrograde signaling: How GENOMES UNCOUPLED proteins adjust nuclear gene expression to plastid biogenesis. The Plant Cell 33 (3), pp. 457 - 574 (2021)
18.
Journal Article
Scossa, F.; Fernie, A. R.: When a Crop Goes Back to the Wild: Feralization. Trends in Plant Science 26 (6), pp. 543 - 545 (2021)
19.
Journal Article
Malinova, I.; Zupok, A.; Massouh, A.; Schöttler, M. A.; Meyer, E. H.; Yaneva-Roder, L.; Szymanski, W. G.; Rößner, M.; Ruf, S.; Bock, R. et al.; Greiner, S.: Correction of Frameshift Mutations in the atpB Gene by Translational Recoding in Chloroplasts of Oenothera and Tobacco. The Plant Cell (2021)
20.
Journal Article
Fichtner, F.; Lunn, J. E.: The Role of Trehalose 6-Phosphate (Tre6P) in Plant Metabolism and Development. Annual Review of Plant Biology (2021)
21.
Journal Article
Nowak, J.; Eng, R.C.; Matz, T.; Waack, M.; Persson, S.; Sampathkumar, A.; Nikoloski, Z.: A network-based framework for shape analysis enables accurate characterization of leaf epidermal cells. Nature Communications 12 (1), 458 (2021)
22.
Journal Article
Schulz, P.; Piepenburg, K.; Lintermann, R.; Herde, M.; Schöttler, M. A.; Schmidt, L. K.; Ruf, S.; Kudla, J.; Romeis, T.; Bock, R.: Improving plant drought tolerance and growth under water limitation through combinatorial engineering of signaling networks. Plant Biotechnology Journal 19 (1), pp. 74 - 86 (2021)
23.
Journal Article
Hertle, A. P.; Haberl, B.; Bock, R.: Horizontal genome transfer by cell-to-cell travel of whole organelles. Science Advances 7 (1), eabd8215 (2021)
24.
Journal Article
Agudo-Canalejo, J.; Schultz, S. W.; Chino, H.; Migliano, S. M.; Saito, C.; Koyama-Honda, I.; Stenmark, H.; Brech, A.; May, A. I.; Mizushima, N. et al.; Knorr, R. L.: Wetting regulates autophagy of phase-separated compartments and the cytosol. Nature 591, pp. 142 - 146 (2021)
25.
Journal Article
Altman, A.; Fan, L.; Foyer, C.; Cowling, W.; Mittler, R.; Qaim, M.; Weber, A. P. M.; Reynolds, M.; Varshney, R. K.; Fernie, A. R.: Past and Future Milestones of Plant Breeding. Trends in Plant Science 26 (6), pp. 530 - 538 (2021)
26.
Journal Article
Aneklaphakij, C.; Saigo, T.; Watanabe, M.; Naake, T.; Fernie, A. R.; Bunsupa, S.; Satitpatipan, V.; Tohge, T.: Diversity of Chemical Structures and Biosynthesis of Polyphenols in Nut-Bearing Species. Frontiers in Plant Science 12, 642581 (2021)
27.
Journal Article
Bachmann, J. A.; Tedder, A.; Fracassetti, M.; Steige, K. A.; Lafon-Placette, C.; Köhler, C.; Slotte, T.: On the origin of the widespread self-compatible allotetraploid Capsella bursa-pastoris (Brassicaceae). Heredity (2021)
28.
Journal Article
Back, G.; Walther, D.: Identification of cis-regulatory motifs in first introns and the prediction of intron-mediated enhancement of gene expression in Arabidopsis thaliana. BMC Genomics 22 (1), 390 (2021)
29.
Journal Article
Baptistella, J. L. C.; Llerena, J. P. P.; Domingues-Júnior, A. P.; Fernie, A. R.; Favarin, J. L.; Mazzafera, P.: Differential responses of three Urochloa species to low phosphorus availability. Annals of Applied Biology (2021)
30.
Journal Article
Barja, M.V.; Ezquerro, M.; Beretta, S.; Diretto, G.; Florez-Sarasa, I.; Feixes, E.; Fiore, A.; Karlova, R.; Fernie, A. R.; Beekwilder, J. et al.; Rodríguez-Concepción, M.: Several geranylgeranyl diphosphate synthase isoforms supply metabolic substrates for carotenoid biosynthesis in tomato. New Phytologist 231 (1), pp. 255 - 272 (2021)
31.
Journal Article
Beleggia, R.; Omranian, N.; Holtz, Y.; Gioia, T.; Fiorani, F.; Nigro, F.M.; Pecchioni, N.; De Vita, P.; Schurr, U.; David, J.L. et al.; Nikoloski, Z.; Papa, R.: Comparative analysis based on transcriptomics and metabolomics data reveal differences between emmer and durum wheat in response to nitrogen starvation. International Journal of Molecular Sciences 22 (9), 4790 (2021)
32.
Journal Article
Bottcher, A.; Domingues Júnior, A.P.; de Souza, L. P.; Tohge, T.; Araujo, W. L.; Fernie, A. R.; Mazzafera, P.: Sugarcane cell suspension reveals major metabolic changes under different nitrogen starvation regimes. BRAGANTIA 80, e2921 (2021)
33.
Journal Article
Breitel, D.; Brett, P.; Alseekh, S.; Fernie, A. R.; Butelli, E.; Martin, C.: Diverting tyrosine: Data from untargeted metabolic analysis of tomato fruit accumulating L-DOPA. Data in Brief 34, 106678 (2021)
34.
Journal Article
Brotman, Y.; Llorente-Wiegand, C.; Oyong, G.; Badoni, S.; Misra, G.; Anacleto, R.; Parween, S.; Pasion, E.; Tiozon Jr., R. N.; Anonuevo, J. J. et al.; Krishna deGuzman, M.; Alseekh, S.; Mbanjo, E. G.N.; Boyd, L. A.; Fernie, A. R.; Sreenivasulu, N.: The genetics underlying metabolic signatures in a brown rice diversity panel and their vital role in human nutrition. The Plant Journal 106 (2), pp. 507 - 527 (2021)
35.
Journal Article
Cárcamo-Fincheira, P.; Reyes-Díaz, M.; Omena-García, R.P.; Vargas, J.R.; Alvear, M.; Florez-Sarasa, I.; Rosado-Souza, L.; Rengel, Z.; Fernie, A. R.; Nunes-Nesi, A. et al.; Inostroza-Blancheteau, C.: Metabolomic analyses of highbush blueberry (Vaccinium corymbosum L.) cultivars revealed mechanisms of resistance to aluminum toxicity. Environmental and Experimental Botany 183, 104338 (2021)
36.
Journal Article
Caroca, R.; Howell, K. A.; Malinova, I.; Burgos, A.; Tiller, N.; Pellizzer, T.; Annunziata, M. G.; Hasse, C.; Ruf, S.; Karcher, D. et al.; Bock, R.: Knock-down of the plastid-encoded acetyl-CoA carboxylase gene uncovers functions in metabolism and development. Plant Physiology 185 (3), pp. 1091 - 1110 (2021)
37.
Journal Article
Casatejada-Anchel, R.; Munoz-Bertomeu, J.; Rosa-Tellez, S.; Anoman, A. D.; Nebauer, S. G.; Torres-Moncho, A.; Fernie, A. R.; Ros, R.: Phosphoglycerate dehydrogenase genes differentially affect Arabidopsis metabolism and development. Plant Science 306, 110863 (2021)
38.
Journal Article
Cheong, B.E.; Beine-Golovchuk, O.; Gorka, M.; Ho, W.W.H.; Martinez-Seidel, F.; Firmino, A.; Skirycz, A.; Roessner, U.; Kopka, J.: Arabidopsis REI-LIKE proteins activate ribosome biogenesis during cold acclimation. Scientific Reports 11 (1), 2410 (2021)
39.
Journal Article
Coluccio Leskow, C.; Conte, M.; Del Pozo, T.; Bermúdez, L.; Lira, B.S.; Gramegna, G.; Baroli, I.; Burgos, E.; Zavallo, D.; Kamenetzky, L. et al.; Asís, R.; Gonzalez, M.; Fernie, A. R.; Rossi, M.; Osorio, S.; Carrari, F.: The cytosolic invertase NI6 affects vegetative growth, flowering, fruit set, and yield in tomato. Journal of Experimental Botany 72 (7), pp. 2525 - 2543 (2021)
40.
Journal Article
da Fonseca-Pereira, P.; Souza, P. V. L.; Fernie, A. R.; Timm, S.; Daloso, D. M.; Araújo, W. L.: Thioredoxin-mediated regulation of (photo)respiration and central metabolism. Journal of Experimental Botany (2021)
41.
Journal Article
da Silva, V. C. H.; Martins, M. C. M.; Calderan-Rodrigues, M.J.; Artins, A.; Monte Bello, C.C.; Gupta, S.; Sobreira, T. J. P.; Riano-Pachon, D. M.; Mafra, V.; Caldana, C.: Shedding Light on the Dynamic Role of the "Target of Rapamycin" Kinase in the Fast-Growing C-4 Species Setaria viridis, a Suitable Model for Biomass Crops. Frontiers in Plant Science 12, 637508 (2021)
42.
Journal Article
Duarte, G. T.; Volkova, P. Y.; Geras'kin, S. A.: A Pipeline for Non-model Organisms for de novo Transcriptome Assembly, Annotation, and Gene Ontology Analysis Using Open Tools: Case Study with Scots Pine. Bio-protocol 11 (3), e3912 (2021)
43.
Journal Article
Dziasek, K.; Simon, L.; Lafon-Placette, C.; Laenen, B.; Wärdig, C.; Santos-González, J.; Slotte, T.; Köhler, C.: Hybrid seed incompatibility in Capsella is connected to chromatin condensation defects in the endosperm. PLoS Genetics 17 (2), e1009370 (2021)
44.
Journal Article
Fernie, A. R.: Using landrace transcription factor alleles to increase yield in modern rice under low input agriculture. Journal of Plant Physiology 258-259, 153362 (2021)
45.
Journal Article
Fernie, A. R.; Alseekh, S.; Liu, J.; Yan, J.: Using Precision Phenotyping to Inform de novo Domestication. Plant Physiology (2021)
46.
Journal Article
Fernie, A. R.; Sonnewald, U.: Plant biotechnology for sustainable agriculture and food safety. Journal of Plant Physiology 261, 153416 (2021)
47.
Journal Article
Fichtner, F.; Barbier, F. F.; Annunziata, M. G.; Feil, R.; Olas, J. J.; Mueller-Roeber, B.; Stitt, M.; Beveridge, C. A.; Lunn, J. E.: Regulation of shoot branching in Arabidopsis by trehalose 6-phosphate. New Phytologist 229 (4), pp. 2135 - 2151 (2021)
48.
Journal Article
Filippou, P.; Zarza, X.; Antoniou, C.; Obata, T.; Villarroel, C.A.; Ganopoulos, I.; Harokopos, V.; Gohari, G.; Aidinis, V.; Madesis, P. et al.; Christou, A.; Fernie, A. R.; Tiburcio, A.F.; Fotopoulos, V.: Systems biology reveals key tissue-specific metabolic and transcriptional signatures involved in the response of Medicago truncatula plant genotypes to salt stress. Computational and Structural Biotechnology Journal 19, pp. 2133 - 2147 (2021)
49.
Journal Article
Florez-Sarasa, I.; Welchen, E.; Racca, S.; Gonzalez, D.H.; Vallarino, J. G.; Fernie, A. R.; Ribas-Carbo, M.; Del-Saz, N.F.: Cytochrome c deficiency differentially affects the in vivo mitochondrial electron partitioning and primary metabolism depending on the photoperiod. Plants 10 (3), 444 (2021)
50.
Journal Article
Franzisky, B. L.; Geilfus, C.-M.; Romo-Perez, M. L.; Fehrle, I.; Erban, A.; Kopka, J.; Zorb, C.: Acclimatisation of guard cell metabolism to long-term salinity. Plant, Cell and Environment 44 (3), pp. 870 - 884 (2021)
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