Journal Article (237)

151.
Journal Article
Orsi, E.; Beekwilder, J.; Eggink, G.; Kengen, S.W.M.; Weusthuis, R.A.: The transition of Rhodobacter sphaeroides into a microbial cell factory. Biotechnology and Bioengineering 118 (2), pp. 531 - 541 (2020)
152.
Journal Article
Osorio, S.; Carneiro, R. T.; Lytovchenko, A.; McQuinn, R.; Sorensen, I.; Vallarino, J. G.; Giovannoni, J. J.; Fernie, A. R.; Rose, J. K. C.: Genetic and metabolic effects of ripening mutations and vine detachment on tomato fruit quality. Plant Biotechnology Journal 18 (1), pp. 106 - 118 (2020)
153.
Journal Article
Pan, K.: Energy security and “big stick” legislation. Environmental and Planning Law Journal 37 (5), pp. 607 - 625 (2020)
154.
Journal Article
Parween, S.; Anonuevo, J.J.; Butardo, V.M.; Misra, G.; Anacleto, R.; Llorente, C.; Kosik, O.; Romero, M.V.; Bandonill, E.H.; Mendioro, M.S. et al.; Lovegrove, A.; Fernie, A. R.; Brotman, Y.; Sreenivasulu, N.: Balancing the double-edged sword effect of increased resistant starch content and its impact on rice texture: its genetics and molecular physiological mechanisms. Plant Biotechnology Journal 18 (8), pp. 1763 - 1777 (2020)
155.
Journal Article
Patterson, J.A.; He, H.; Folz, J.S.; Li, Q.; Wilson, M.A.; Fiehn, O.; Bruner, S.D.; Bar-Even, A.; Hanson, A.D.: Thioproline formation as a driver of formaldehyde toxicity in Escherichia coli. Biochemical Journal 477 (9), pp. 1745 - 1757 (2020)
156.
Journal Article
Perlikowski, D.; Augustyniak, A.; Skirycz, A.; Pawłowicz, I.; Masajada, K.; Eckhardt, Ä.; Kosmala, A.: Efficient root metabolism improves drought resistance of Festuca arundinacea. Plant and Cell Physiology 61 (3), pp. 492 - 504 (2020)
157.
Journal Article
Ponnu, J.; Schlereth, A.; Zacharaki, V.; Dzialo, M.; Abel, C.; Feil, R.; Schmid, M.; Wahl, V.: The Trehalose 6-Phosphate Pathway Impacts Vegetative Phase Change in Arabidopsis thaliana. The Plant Journal (accepted)
158.
Journal Article
Pott, D. M.; Vallarino, J. G.; Cruz-Rus, E.; Willmitzer, L.; Sanchez-Sevilla, J. F.; Amaya, I.; Osorio, S.: Genetic analysis of phenylpropanoids and antioxidant capacity in strawberry fruit reveals mQTL hotspots and candidate genes. Scientific Reports 10 (1), 20197 (2020)
159.
Journal Article
Pott, D. M.; de Abreu e Lima, F.; Soria, C.; Willmitzer, L.; Fernie, A. R.; Nikoloski, Z.; Osorio, S.; Vallarino, J. G.: Metabolic reconfiguration of strawberry physiology in response to postharvest practices. Food Chemistry 321, 126747 (2020)
160.
Journal Article
Pott, D. M.; Vallarino, J. G.; Osorio, S.: Metabolite Changes during Postharvest Storage: Effects on Fruit Quality Traits. Metabolites (accepted)
161.
Journal Article
Qiu, Y.; Köhler, C.: Mobility connects: transposable elements wire new transcriptional networks by transferring transcription factor binding motifs. Biochemical Society Transactions 48 (3), pp. 1005 - 1017 (2020)
162.
Journal Article
Qiu, H.; Zhu, X.; Wan, H.; Xu, L.; Zhang, Q.; Hou, P.; Fan, Z.; Lyu, Y.; Ni, D.; Usadel, B. et al.; Fernie, A. R.; Wen, W.: Parallel Metabolomic and Transcriptomic Analysis Reveals Key Factors for Quality Improvement of Tea Plants. Journal of Agricultural and Food Chemistry 68 (19), pp. 5483 - 5495 (2020)
163.
Journal Article
Razaghi-Moghadam, Z.; Nikoloski, Z.: Supervised Learning of Gene Regulatory Networks. Current Protocols in Plant Biology 5 (2), e20106 (2020)
164.
Journal Article
Richter, A. S.; Tohge, T.; Fernie, A. R.; Grimm, B.: The genomes uncoupled -dependent signalling pathway coordinates plastid biogenesis with the synthesis of anthocyanins. Philosophical Transactions of the Royal Society of London, Series B: Biological Sciences 375 (1801), 20190403 (2020)
165.
Journal Article
Robaina-Estévez, S.; Nikoloski, Z.: Flux-based hierarchical organization of Escherichia coli’s metabolic network. PLoS Computational Biology 16 (4), e1007832 (2020)
166.
Journal Article
Rödiger, A.; Galonska, J.; Bergner, E.; Agne, B.; Helm, S.; Alseekh, S.; Fernie, A. R.; Thieme, D.; Hoehenwarter, W.; Hause, G. et al.; Pfannschmidt, T.; Baginsky, S.: Working day and night: Plastid casein kinase 2 catalyses phosphorylation of proteins with diverse functions in light- and dark-adapted plastids. The Plant Journal 104 (2), pp. 546 - 558 (2020)
167.
Journal Article
Rosa-Téllez, S.; Anoman, A.D.; Alcántara-Enguídanos, A.; Garza-Aguirre, R.A.; Alseekh, S.; Ros, R.: PGDH family genes differentially affect Arabidopsis tolerance to salt stress. Plant Science 290, 110284 (2020)
168.
Journal Article
Rosado-Souza, L.; Fernie, A. R.; Aarabi, F.: Ascorbate and Thiamin: Metabolic Modulators in Plant Acclimation Responses. Plants 9 (SI-1), 101 (2020)
169.
Journal Article
Sakai, Y.; Koyama-Honda, I.; Tachikawa, M.; Knorr, R. L.; Mizushima, N.: Modeling Membrane Morphological Change during Autophagosome Formation. iScience 23 (9), 10146 (2020)
170.
Journal Article
Salem, M. A.; de Souza, L. P.; Serag, A.; Fernie, A. R.; Farag, M. A.; Ezzat, S. M.; Alseekh, S.: Metabolomics in the Context of Plant Natural Products Research: From Sample Preparation to Metabolite Analysis. Metabolites 10 (1), 37 (2020)
171.
Journal Article
Salem, M. A.; Radwan, R. A.; Mostafa, E. S.; Alseekh, S.; Fernie, A. R.; Ezzat, S. M.: Using an UPLC/MS-based untargeted metabolomics approach for assessing the antioxidant capacity and anti-aging potential of selected herbs. RSC Advances 10, pp. 31511 - 31524 (2020)
172.
Journal Article
Salem, M.A.; Yoshida, T.; de Souza, L. P.; Alseekh, S.; Bajdzienko, K.; Fernie, A. R.; Giavalisco, P.: An improved extraction method enables the comprehensive analysis of lipids, proteins, metabolites and phytohormones from a single sample of leaf tissue under water-deficit stress. The Plant Journal 103 (4), pp. 1614 - 1632 (2020)
173.
Journal Article
Sampathkumar, A.: Mechanical feedback-loop regulation of morphogenesis in plants. Development 147 (16), dev177964 (2020)
174.
Journal Article
Sánchez-Andrea, I.; Guedes, I.A.; Hornung, B.; Boeren, S.; Lawson, C.E.; Sousa, D.Z.; Bar-Even, A.; Claassens, N. J.; Stams, A.J.M.: The reductive glycine pathway allows autotrophic growth of Desulfovibrio desulfuricans. Nature Communications 11 (1), 5090 (2020)
175.
Journal Article
Sanchez-Bragado, R.; Vicente, R.; Molero, G.; Serret, M.D.; Maydup, M.L.; Araus, J.L.: New avenues for increasing yield and stability in C3 cereals: exploring ear photosynthesis. Current Opinion in Plant Biology 56, pp. 223 - 234 (2020)
176.
Journal Article
Santos Reginaldo, F. P.; Bueno, P.C.P.; de Matos Costa, I. C.; Roque, A. d. A.; Fett-Neto, A. G.; Cavalheiro, A. J.; Giordani, R. B.: Molecular Networking Discloses the Chemical Diversity of Flavonoids and Selaginellins in Selaginella convoluta. Planta Medica (2020)
177.
Journal Article
Satanowski, A.; Dronsella, B.; Noor, E.; Vögeli, B.; He, H.; Wichmann, P.; Erb, T.J.; Lindner, S. N.; Bar-Even, A.: Awakening a latent carbon fixation cycle in Escherichia coli. Nature Communications 11 (1), 5812 (2020)
178.
Journal Article
Satanowski, A.; Bar-Even, A.: A one-carbon path for fixing CO2. EMBO reports 21 (4), e50273 (2020)
179.
Journal Article
Schaarschmidt, S.; Fischer, A.; Lawas, L.M.F.; Alam, R.; Septiningsih, E. M.; Bailey-Serres, J.; Jagadish, S. V. K.; Huettel, B.; Hincha, D. K.; Zuther, E.: Utilizing PacBio Iso-Seq for Novel Transcript and Gene Discovery of Abiotic Stress Responses in Oryza sativa L. International Journal of Molecular Sciences 21 (21), 8148 (2020)
180.
Journal Article
Schaarschmidt, S.; Fischer, A.; Zuther, E.; Hincha, D. K.: Evaluation of seven different rna-seq alignment tools based on experimental data from the model plant arabidopsis thaliana. International Journal of Molecular Sciences 21 (5), 1720 (2020)
181.
Journal Article
Schaarschmidt, S.; Lawas, L.M.F.; Glaubitz, U.; Li, X.; Erban, A.; Kopka, J.; Krishna Jagadish, S.V.; Hincha, D. K.; Zuther, E.: Season affects yield and metabolic profiles of rice (Oryza sativa) under high night temperature stress in the field. International Journal of Molecular Sciences 21 (9), 3187 (2020)
182.
Journal Article
Schuster, M.; Gao, Y.; Schöttler, M. A.; Bock, R.; Zoschke, R.: Limited Responsiveness of Chloroplast Gene Expression during Acclimation to High Light in Tobacco. Plant Physiology 182 (1), pp. 424 - 435 (2020)
183.
Journal Article
Scossa, F.; Fernie, A. R.: The evolution of metabolism: How to test evolutionary hypotheses at the genomic level. Computational and Structural Biotechnology Journal 18, pp. 482 - 500 (2020)
184.
Journal Article
Seibert, T.; Abel, C.; Wahl, V.: Flowering time and the identification of floral marker genes in Solanum tuberosum ssp. andigena. Journal of Experimental Botany 71 (3), pp. 986 - 996 (2020)
185.
Journal Article
Shameer, S.; Vallarino, J. G.; Fernie, A. R.; Ratcliffe, R. G.; Sweetlove, L. J.: Flux balance analysis of metabolism during growth by osmotic cell expansion and its application to tomato fruits. The Plant Journal 103 (1), pp. 68 - 82 (2020)
186.
Journal Article
Shapiguzov, A.; Nikkanen, L.; Fitzpatrick, D.; Vainonen, J. P.; Gossens, R.; Alseekh, S.; Aarabi, F.; Tiwari, A.; Blokhina, O.; Panzarová, K. et al.; Benedikty, Z.; Tyystjärvi, E.; Fernie, A. R.; Trtílek, M.; Aro, E.-M.; Rintamäki, E.; Kangasjärvi, J.: Dissecting the interaction of photosynthetic electron transfer with mitochondrial signalling and hypoxic response in the Arabidopsis rcd1 mutant. Philosophical Transactions of the Royal Society of London, Series B: Biological Sciences 375 (1801), 20190413 (2020)
187.
Journal Article
Shi, T.; Zhu, A.; Jia, J.; Hu, X.; Chen, J.; Liu, W.; Ren, X.; Sun, D.; Fernie, A. R.; Cui, F. et al.; Chen, W.: Metabolomics analysis and metabolite-agronomic trait associations using kernels of wheat (Triticum aestivum) recombinant inbred lines. The Plant Journal 103 (1), pp. 279 - 292 (2020)
188.
Journal Article
Silvestri, A.; Pätzold, J.; Fratzl, P.; Scheffel, A.; Faivre, D.: Surface-Enhanced Raman Scattering Microspectroscopy Enables the Direct Characterization of Biomineral-Associated Organic Material on Single Calcareous Microskeletons. The Journal of Physical Chemistry Letters 11 (20), pp. 8623 - 8629 (2020)
189.
Journal Article
Skeffington, A. W.; Donath, A.: ProminTools: shedding light on proteins of unknown function in biomineralization with user friendly tools illustrated using mollusc shell matrix protein sequences. PeerJ 8, e9852 (2020)
190.
Journal Article
Skeffington, A. W.; Grimm, A.; Schönefeld, S.; Petersen, K.; Scheffel, A.: An efficient method for the plating of haploid and diploid Emiliania huxleyi on solid medium. Journal of Phycology 56 (1), pp. 238 - 242 (2020)
191.
Journal Article
Song, S.; Timm, S.; Lindner, S. N.; Reimann, V.; Hess, W. R.; Hagemann, M.; Brouwer, E.-M.: Expression of Formate-Tetrahydrofolate Ligase Did Not Improve Growth but Interferes With Nitrogen and Carbon Metabolism of Synechocystissp. PCC 6803. Frontiers in Microbiology 11, 1650 (2020)
192.
Journal Article
Sonnewald, U.; Fernie, A. R.; Gruissem, W.; Schläpfer, P.; Anjanappa, R. B.; Chang, S.-H.; Ludewig, F.; Rascher, U.; Muller, O.; van Doorn, A. M. et al.; Rabbi, I. Y.; Zierer, W.: The Cassava Source-Sink project: Opportunities and challenges for crop improvement by metabolic engineering. The Plant Journal 103 (5), pp. 1655 - 1665 (2020)
193.
Journal Article
Sujeeth, N.; Mehterov, N.; Gupta, S.; Qureshi, M. K.; Fischer, A.; Proost, S.; Omidbakhshfard, M. A.; Obata, T.; Benina, M.; Staykov, N. et al.; Balazadeh, S.; Walther, D.; Fernie, A. R.; Mueller-Roeber, B.; Hille, J.; Gechev, T. S.: A novel seed plants gene regulates oxidative stress tolerance in Arabidopsis thaliana. Cellular and Molecular Life Sciences 77, pp. 705 - 718 (2020)
194.
Journal Article
Suzuki, M.; Wu, S.; Mimura, M.; Alseekh, S.; Fernie, A. R.; Hanson, A. D.; McCarty, D. R.: Construction and applications of a B vitamin genetic resource for investigation of vitamin dependent metabolism in maize. The Plant Journal 101 (2), pp. 442 - 454 (2020)
195.
Journal Article
Tan, J.; Zhang, F.; Karcher, D.; Bock, R.: Expanding the genome-targeting scope and the site selectivity of high-precision base editors. Nature Communications 11 (1), 629 (2020)
196.
Journal Article
Tedesco, S.; Pina, A.; Fevereiro, P.; Kragler, F.: A Phenotypic Search on Graft Compatibility in Grapevine. Agronomy 10 (5), 706 (2020)
197.
Journal Article
Thirumalaikumar, V. P.; Gorka, M.; Schulz, K.; Masclaux-Daubresse, C.; Sampathkumar, A.; Skirycz, A.; Vierstra, R. D.; Balazadeh, S.: Selective autophagy regulates heat stress memory in Arabidopsis by NBR1-mediated targeting of HSP90 and ROF1. Autophagy 19 (9), pp. 2184 - 2199 (2020)
198.
Journal Article
Thole, V.; Vain, P.; Yang, R.-Y.; Almeida Barros da Silva, J.; Enfissi, E.M.A.; Nogueira, M.; Price, E.J.; Alseekh, S.; Fernie, A. R.; Fraser, P.D. et al.; Hanson, P.; Martin, C.: Analysis of Tomato Post-Harvest Properties: Fruit Color, Shelf Life, and Fungal Susceptibility. Current protocols in plant biology 5 (2), e20108 (2020)
199.
Journal Article
Tohge, T.; Scossa, F.; Wendenburg, R.; Frasse, P.; Balbo, I.; Watanabe, M.; Alseekh, S.; Jadha, S. S.; Delfin, J. C.; Lohse, M. et al.; Giavalisco, P.; Usadel, B.; Zhang, Y.; Luo, J.; Bouzayen, M.; Fernie, A. R.: Exploiting natural variation in tomato to define pathway structure and metabolic regulation of fruit polyphenolics in the lycopersicum complex. Molecular Plant 13 (7), pp. 1027 - 1046 (2020)
200.
Journal Article
Tohge, T.; Fernie, A. R.: Co-Regulation of Clustered and Neo-Functionalized Genes in Plant-Specialized Metabolism. Plants 9 (5), 622 (2020)
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