Publications of the MPI

Journal Article (238)

201.

Journal Article

Tohge, T.; Fernie, A. R.: Co-Regulation of Clustered and Neo-Functionalized Genes in Plant-Specialized Metabolism. Plants 9 (5), 622 (2020)

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202.

Journal Article

Toleco, M.R.; Naake, T.; Zhang, Y.; Heazlewood, J. L.; Fernie, A. R.: Plant Mitochondrial Carriers: Molecular Gatekeepers That Help to Regulate Plant Central Carbon Metabolism. Plants 9 (1 - SI), 117 (2020)

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203.

Journal Article

Tong, H.; Küken, A.; Nikoloski, Z.: Integrating molecular markers into metabolic models improves genomic selection for Arabidopsis growth. Nature Communications 11 (1), 2410 (2020)

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204.

Journal Article

Trejo-Arellano, M. S.; Mehdi, S.; de Jonge, J.; Tomastikova, E. D.; Köhler, C.; Hennig, L.: Dark-Induced Senescence Causes Localized Changes in DNA Methylation. Plant Physiology 182 (2), pp. 949 - 961 (2020)

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205.

Journal Article

Treves, H.; Siemiatkowska, B.; Luzarowska, U.; Murik, O.; Fernandez-Pozo, N.; Moraes, T. A.; Erban, A.; Armbruster, U.; Brotman, Y.; Kopka, J. et al.; Rensing, S. A.; Szymanski, J.; Stitt, M.: Multi-omics reveals mechanisms of total resistance to extreme illumination of a desert alga. Nature Plants 6, pp. 1031 - 1043 (2020)

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206.

Journal Article

Upadhyaya, S.; Agrawal, S.; Gorakshakar, A.; Rao, B.J.: TOR kinase activity in Chlamydomonas reinhardtii is modulated by cellular metabolic states. FEBS Letters 594 (19), pp. 3122 - 3141 (2020)

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207.

Journal Article

Urrea Castellanos, R.; Friedrich, T.; Petrovic, N.; Altmann, S.; Brzezinka, K.; Gorka, M.; Graf, A.; Bäurle, I.: FORGETTER2 protein phosphatase and phospholipase D modulate heat stress memory in Arabidopsis. The Plant Journal 104 (1), pp. 7 - 17 (2020)

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208.

Journal Article

Vaid, N.; Ishihara, H.; Plötner, B.; Sageman-Furnas, K.; Wiszniewski, A.A.G.; Laitinen, R.: Leaf chlorosis in Arabidopsis thaliana hybrids is associated with transgenerational decline and imbalanced ribosome number. New Phytologist 228 (3), pp. 989 - 1000 (2020)

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209.

Journal Article

Vallarino, J. G.; Kubiszewski-Jakubiak, S.; Ruf, S.; Rößner, M.; Timm, S.; Bauwe, H.; Carrari, F.; Rentsch, D.; Bock, R.; Sweetlove, L.J. et al.; Fernie, A. R.: Multi-gene metabolic engineering of tomato plants results in increased fruit yield up to 23. Scientific Reports 10 (1), 17219 (2020)

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210.

Journal Article

Vallarino, J.G.; Merchante, C.; Sánchez-Sevilla, J.F.; de Luis Balaguer, M.A.; Pott, D.M.; Ariza, M.T.; Casañal, A.; Posé, D.; Vioque, A.; Amaya, I. et al.; Willmitzer, L.; Solano, R.; Sozzani, R.; Fernie, A. R.; Botella, M.A.; Giovannoni, J.J.; Valpuesta, V.; Osorio, S.: Characterizing the involvement of FaMADS9 in the regulation of strawberry fruit receptacle development. Plant Biotechnology Journal 18 (4), pp. 929 - 943 (2020)

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211.

Journal Article

van Eerde, A.; Várnai, A.; Jameson, J.K.; Paruch, L.; Moen, A.; Anonsen, J.H.; Chylenski, P.; Steen, H.S.; Heldal, I.; Bock, R. et al.; Eijsink, V.G.H.; Liu-Clarke, J.: In-depth characterization of Trichoderma reesei cellobiohydrolase TrCel7A produced in Nicotiana benthamiana reveals limitations of cellulase production in plants by host-specific post-translational modifications. Plant Biotechnology Journal 18 (3), pp. 631 - 643 (2020)

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212.

Journal Article

Vergara-Diaz, O.; Vatter, T.; Kefauver, S. C.; Obata, T.; Fernie, A. R.; Araus, J. L.: Assessing durum wheat ear and leaf metabolomes in the field through hyperspectral data. The Plant Journal 102 (3), pp. 615 - 630 (2020)

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213.

Journal Article

Vergara-Diaz, O.; Vatter, T.; Vicente, R.; Obata, T.; Nieto-Taladriz, M.T.; Aparicio, N.; Carlisle Kefauver, S.; Fernie, A. R.; Araus, J.L.: Metabolome Profiling Supports the Key Role of the Spike in Wheat Yield Performance. Cells 9 (4), 1025 (2020)

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214.

Journal Article

Vidal-Meireles, A.; Tóth, D.; Kovács, L.; Neupert, J.; Tóth, S.Z.: Ascorbate Deficiency Does Not Limit Nonphotochemical Quenching in Chlamydomonas reinhardtii. Plant Physiology 182 (1), pp. 597 - 611 (2020)

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215.

Journal Article

Vyse, K.; Faivre, L.; Romich, M.; Pagter, M.; Schubert, D.; Hincha, D. K.; Zuther, E.: Transcriptional and Post-Transcriptional Regulation and Transcriptional Memory of Chromatin Regulators in Response to Low Temperature. Frontiers in Plant Science 11, 39 (2020)

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216.

Journal Article

Vyse, K.; Penzlin, J.; Sergeant, K.; Hincha, D. K.; Arora, R.; Zuther, E.: Repair of sub-lethal freezing damage in leaves of Arabidopsis thaliana. BMC Plant Biology 20 (1), 35 (2020)

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217.

Journal Article

Wang, Z.; Butel, N.; Santos-Gonzalez, J.; Borges, F.; Yi, J.; Martienssen, R. A.; Martinez, G.; Köhler, C.: Polymerase IV Plays a Crucial Role in Pollen Development in Capsella([OPEN]). The Plant Cell 32 (4), pp. 950 - 966 (2020)

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218.

Journal Article

Wang, Y.; Wang, L.; Micallef, B. J.; Tetlow, I. J.; Mullen, R. T.; Feil, R.; Lunn, J. E.; Emes, M. J.: AKINβ1, a regulatory subunit of SnRK1, regulates organic acid metabolism and acts as a global regulator of genes involved in carbon, lipid and nitrogen metabolism. Journal of Experimental Botany 71 (3), pp. 1010 - 1028 (2020)

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219.

Journal Article

Wan, H.; Liu, H.; Zhang, J.; Lyu, Y.; Li, Z.; He, Y.; Zhang, X.; Deng, X.; Brotman, Y.; Fernie, A. R. et al.; Cheng, Y.; Wen, W.: Lipidomic and transcriptomic analysis reveals reallocation of carbon flux from cuticular wax into plastid membrane lipids in a glossy “Newhall” navel orange mutant. Horticulture Research 7, 41 (2020)

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220.

Journal Article

Watanabe, M.; Ueda, Y.; Kondo, K.; Ishikawa, S.; Tohge, T.; Burgos, A.; Brotman, Y.; Fernie, A. R.; Walther, D.; Hoefgen, R. et al.; Wissuwa, M.: Metabolomic markers and physiological adaptations for high phosphate utilization efficiency in rice. Plant, Cell and Environment 43 (9), pp. 2066 - 2079 (2020)

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221.

Journal Article

Wenk, S.; Schann, K.; He, H.; Rainaldi, V.; Kim, S.; Lindner, S. N.; Bar-Even, A.: An “energy-auxotroph” E. coli provides an in vivo platform for assessing NADH regeneration systems. Biotechnology and Bioengineering 117 (11), pp. 3422 - 3434 (2020)

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222.

Journal Article

Wen, W.; Alseekh, S.; Fernie, A. R.: Conservation and diversification of flavonoid metabolism in the plant kingdom. Current Opinion in Plant Biology 55, pp. 100 - 108 (2020)

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223.

Journal Article

Whitcomb, S. J.; Rakpenthai, A.; Brückner, F.; Fischer, A.; Parmar, S.; Erban, A.; Kopka, J.; Hawkesford, M.J.; Hoefgen, R.: Cysteine and Methionine Biosynthetic Enzymes Have Distinct Effects on Seed Nutritional Quality and on Molecular Phenotypes Associated With Accumulation of a Methionine-Rich Seed Storage Protein in Rice. Frontiers in Plant Science 11, 1118 (2020)

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224.

Journal Article

Xu, P.; Chukhutsina, V.U.; Nawrocki, W.J.; Schansker, G.; Bielczynski, L.W.; Lu, Y.; Karcher, D.; Bock, R.; Croce, R.: Photosynthesis without β-carotene. eLife 9, e58984 (2020)

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225.

Journal Article

Yu, Q.; He, Z.; Zubkov, D.; Huang, S.; Kurochkin, I.; Yang, X.; Halene, T.; Willmitzer, L.; Giavalisco, P.; Akbarian, S. et al.; Khaitovich, P.: Lipidome alterations in human prefrontal cortex during development, aging, and cognitive disorders. Molecular Psychiatry 25 (11), pp. 2952 - 2969 (2020)

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226.

Journal Article

Zhan, C.; Lei, L.; Liu, Z.; Zhou, S.; Yang, C.; Zhu, X.; Guo, H.; Zhang, F.; Peng, M.; Zhang, M. et al.; Li, Y.; Yang, Z.; Sun, Y.; Shi, Y.; Li, K.; Liu, L.; Shen, S.; Wang, X.; Shao, J.; Jing, X.; Wang, Z.; Li, Y.; Czechowski, T.; Hasegewa, M.; Graham, I.; Tohge, T.; Qu, L.; Liu, X.; Fernie, A. R.; Chen, L.-L.; Yuan, M.; Luo, J.: Selection of a subspecies-specific diterpene gene cluster implicated in rice disease resistance. Nature Plants 6 (12), pp. 1447 - 1454 (2020)

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227.

Journal Article

Zhan, C.; Lei, L.; Liu, Z.; Zhou, S.; Yang, C.; Zhu, X.; Guo, H.; Zhang, F.; Peng, M.; Zhang, M. et al.; Li, Y.; Yang, Z.; Sun, Y.; Shi, Y.; Li, K.; Liu, L.; Shen, S.; Wang, X.; Shao, J.; Jing, X.; Wang, Z.; Li, Y.; Czechowski, T.; Hasegawa, M.; Graham, I.; Tohge, T.; Qu, L.; Liu, X.; Fernie, A. R.; Chen, L.-L.; Yuan, M.; Luo, J.: Author Correction: Selection of a subspecies-specific diterpene gene cluster implicated in rice disease resistance (Nature Plants, (2020), 6, 12, (1447-1454), 10.1038/s41477-020-00816-7). Nature Plants (accepted)

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228.

Journal Article

Zhang, W.; Alseekh, S.; Zhu, X.; Zhang, Q.; Fernie, A. R.; Kuang, H.; Wen, W.: Dissection of the domestication-shaped genetic architecture of lettuce primary metabolism. The Plant Journal 104 (3), pp. 613 - 630 (2020)

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229.

Journal Article

Zhang, Y.; Chen, M.; Siemiatkowska, B.; Toleco, M.R.; Jing, Y.; Strotmann, V.; Zhang, J.; Stahl, Y.; Fernie, A. R.: A Highly Efficient Agrobacterium-Mediated Method for Transient Gene Expression and Functional Studies in Multiple Plant Species. Plant Communications 1 (5), 100028 (2020)

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230.

Journal Article

Zhang, Y.; Sampathkumar, A.; Kerbler, S.M.-L.; Swart, C.; Hille, C.; Seerangan, K.; Graf, A.; Sweetlove, L.; Fernie, A. R.: A moonlighting role for enzymes of glycolysis in the co-localization of mitochondria and chloroplasts. Nature Communications 11 (1), 4509 (2020)

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231.

Journal Article

Zhang, W.; Zhang, Y.; Qiu, H.; Guo, Y.; Wan, H.; Zhang, X.; Scossa, F.; Alseekh, S.; Zhang, Q.; Wang, P. et al.; Xu, L.; Schmidt, M.H.-W.; Jia, X.; Li, D.; Zhu, A.; Guo, F.; Chen, W.; Ni, D.; Usadel, B.; Fernie, A. R.; Wen, W.: Genome assembly of wild tea tree DASZ reveals pedigree and selection history of tea varieties. Nature Communications 11 (1), 3719 (2020)

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232.

Journal Article

Zhang, Y.; Fernie, A. R.: On the Detection and Functional Significance of the Protein–Protein Interactions of Mitochondrial Transport Proteins. Biomolecules 10 (8), 1107 (2020)

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233.

Journal Article

Zhang, Y.; Fernie, A. R.: Resolving the metabolon: is the proof in the metabolite? EMBO Reports 21 (8), e50774 (2020)

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234.

Journal Article

Zhang, Y.; Krahnert, I.; Bolze, A.; Gibon, Y.; Fernie, A. R.: Adenine Nucleotide and Nicotinamide Adenine Dinucleotide Measurements in Plants. Current Protocols in Plant Biology 5 (3), e20115 (2020)

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235.

Journal Article

Zhang, Y.; Skirycz, A.; Fernie, A. R.: An Abundance and Interaction Encyclopedia of Plant Protein Function. Trends in Plant Science 25 (7), pp. 627 - 630 (2020)

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236.

Journal Article

Zhao, F.; Du, F.; Oliveri, H.; Zhou, L.; Ali, O.; Chen, W.; Feng, S.; Wang, Q.; Lü, S.; Long, M. et al.; Schneider, R.; Sampathkumar, A.; Godin, C.; Traas, J.; Jiao, Y.: Microtubule-Mediated Wall Anisotropy Contributes to Leaf Blade Flattening. Current Biology 30 (20), pp. 3972 - 3985 (2020)

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237.

Journal Article

Zhu, J.; Loubéry, S.; Broger, L.; Zhang, Y.; Lorenzo-Orts, L.; Utz-Pugin, A.; Fernie, A. R.; Young-Tae, C.; Hothorn, M.: A genetically validated approach to detect inorganic polyphosphates in plants. The Plant Journal 102 (3), pp. 507 - 516 (2020)

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238.

Journal Article

Zwaag, J.; Horst, R.; Blaženovic, I.; Stoessel, D.; Ratter, J.; Worseck, J.M.; Schauer, N.; Stienstra, R.; Netea, M.G.; Jahn, D. et al.; Pickkers, P.; Kox, M.: Involvement of lactate and pyruvate in the anti-inflammatory effects exerted by voluntary activation of the sympathetic nervous system. Metabolites 10 (4), 148 (2020)

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Book Chapter (8)

239.

Book Chapter

Erban, A.; Martinez-Seidel, F.; Rajarathinam, Y.; Dethloff, F.; Orf, I.; Fehrle, I.; Alpers, J.; Beine-Golovchuk, O.; Kopka, J.: Multiplexed Profiling and Data Processing Methods to Identify Temperature-Regulated Primary Metabolites Using Gas Chromatography Coupled to Mass Spectrometry. In: Plant Cold Acclimation: Methods in molecular biology, Vol. 2156, pp. 203 - 239 (Eds. Hincha, D. K.; Zuther, E.) (2020)

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240.

Book Chapter

Forner, J.: Germline-Transmitted Genome Editing Methodology in Arabidopsis thaliana Using TAL Effector Nucleases. In: Plant Stem Cells: Methods and Protocols, pp. 23 - 30 (Eds. Naseem, M.; Dandekar, T.). Springer US, New York, NY (2020)

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241.

Book Chapter

Hincha, D. K.; Zuther, E.: Introduction: Plant Cold Acclimation and Winter Survival. In: Plant Cold Acclimation: Methods and Protocols, Vol. 2156, pp. 1 - 7 (Eds. Hincha, D. K.; Zuther, E.). Springer US, New York, NY (2020)

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242.

Book Chapter

Naake, T.; Gaquerel, E.; Fernie, A. R.: Annotation of Specialized Metabolites from High-Throughput and High Resolution Mass Spectrometry Metabolomics. In: Computational Methods and Data Analysis for Metabolomics, pp. 209 - 225 (Ed. Li, S.). Springer US, New York, NY (2020)

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243.

Book Chapter

Naseri, G.; Mueller-Roeber, B.: A Step-by-Step Protocol for COMPASS, a Synthetic Biology Tool for Combinatorial Gene Assembly. In: DNA Cloning and Assembly: Methods and Protocols, pp. 277 - 303 (Eds. Chandran, S.; George, K. W.). Springer US, New York, NY (2020)

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244.

Book Chapter

Seerangan, K.; van Spoordonk, R.; Sampathkumar, A.; Eng, R.C.: Long-term live-cell imaging techniques for visualizing pavement cell morphogenesis. In: Methods in cell biology, Vol. 160, pp. 365 - 380 (2020)

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245.

Book Chapter

Takahashi, D.; Zuther, E.; Hincha, D. K.: Analysis of Changes in Plant Cell Wall CompositionCell wallcompositions and Structure During Cold Acclimation. In: Plant Cold Acclimation: Methods and Protocols, Vol. 2156, pp. 255 - 268 (Eds. Hincha, D. K.; Zuther, E.). Springer US, New York, NY (2020)

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246.

Book Chapter

Thalhammer, A.; Pagter, M.; Hincha, D. K.; Zuther, E.: Measuring Freezing Tolerance of Leaves and Rosettes: Electrolyte Leakage and Chlorophyll Fluorescence Assays. In: Plant Cold Acclimation: Methods in Molecular Biology, Vol. 2156, pp. 9 - 21 (Eds. Hincha, D. K.; Zuther, E.). Springer, US (2020)

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Conference Paper (1)

247.

Conference Paper

Razaghi-Moghadam, Z.; Masoudi-Nejad, A.; Nowzari-Dalini, A.: ParaKavosh: A Parallel Algorithm for Finding Biological Network Motifs. In: 2020 11th International Conference on Information and Knowledge Technology (IKT), pp. 45 - 49. (2020)

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Editorial (4)

248.

Editorial

Armarego-Marriott, T.: Ralph Bock. Plant Cell 32 (1), pp. 4 - 6 (2020)

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249.

Editorial

Fernie, A. R.; Hashida, S.-N.; Yoshimura, K.; Gakière, B.; Mou, Z.; Pétriacq, P.: Editorial: NAD Metabolism and Signaling in Plants. Frontiers in Plant Science 11, 146 (2020)

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250.

Editorial

Fernie, A. R.; Wen, W.: Editorial overview: Evolution of metabolic diversity. Current Opinion in Plant Biology 55, pp. A1 - A4 (2020)

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