Publications of the MPI

151.

Journal Article

Habibpour , M.; Razaghi-Moghadam, Z.; Nikoloski, Z.: Machine learning of metabolite-protein interactions from model-derived metabolic phenotypes. NAR: genomics and bioinformatics 6 (3), lqae114 (2024)

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152.

Journal Article

Lopes, F. L.; Formosa-Jordan, P.; Malivert, A.; Margalha, L.; Confraria, A.; Feil, R.; Lunn, J. E.; Jönsson, H.; Landrein, B.; Baena-González, E.: Sugar signaling modulates SHOOT MERISTEMLESS expression and meristem function in Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America 121 (37), e2408699121 (2024)

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153.

Journal Article

Muino, J. M.; Ruwe, H.; Qu, Y.; Maschmann, S.; Chen, W.; Zoschke, R.; Ohler, U.; Kaufmann, K.; Schmitz-Linneweber, C.: MatK impacts differential chloroplast translation by limiting spliced tRNA-K(UUU) abundance. The Plant Journal 119 (6), pp. 2737 - 2752 (2024)

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154.

Journal Article

Pholo-Tait, M.; Le Maitre, N.C.; Lloyd, J.R.; Kossmann, J.; Hills, P.N.; Schulze, W.X.; Alseekh, S.; Valentine, A.J.: Proteome profiling of lumichrome-treated Arabidopsis thaliana suggests that various regulatory mechanisms mediate enhanced photosynthesis and plant growth. South African Journal of Botany 172, pp. 515 - 528 (2024)

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155.

Journal Article

Pulido-Capiz, A.; Chimal-Vega, B.; Avila-Barrientos, L. P.; Campos-Valenzuela, A.; Díaz-Molina, R.; Muñiz-Salazar, R.; Galindo-Hernández, O.; García-González, V.: Auraptene Boosts the Efficacy of the Tamoxifen Metabolites Endoxifen and 4-OH-Tamoxifen in a Chemoresistant ER plus Breast Cancer Model. Pharmaceutics 16 (9), 1179 (2024)

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156.

Journal Article

Qian, L.; Yan, B.; Zhou, J.; Fan, Y.; Tao, M.; Zhu, W.; Wang, C.; Tu, Q.; Tian, Y.; He, Q. et al.; Wu, K.; Niu, M.; Yan, Q.; Nikoloski, Z.; Liu, G.; Yu, X.; He, Z.: Comprehensive profiles of sulfur cycling microbial communities along a mangrove sediment depth. Science of the Total Environment 944, 173961 (2024)

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157.

Journal Article

Ting, M. K. Y.; Gao, Y.; Barahimipour, R.; Ghandour, R.; Liu, J.; Martinez-Seidel, F.; Smirnova, J.; Gotsmann, V. L.; Fischer, A.; Haydon, M. J. et al.; Willmund, F.; Zoschke, R.: Optimization of ribosome profiling in plants including structural analysis of rRNA fragments. Plant Methods 20 (1), 143 (2024)

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158.

Journal Article

Van Gelder, K.; Lindner, S. N.; Hanson, A.D.; Zhou, J.: Strangers in a foreign land: ‘Yeastizing’ plant enzymes. Microbial Biotechnology 17 (9), e14525 (2024)

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159.

Journal Article

von Steimker, J.; Tripodi, P.; Wendenburg, R.; Tringovska, I.; Nankar, A. N.; Stoeva, V.; Pasev, G.; Klemmer, A.; Todorova, V.; Bulut, M. et al.; Tikunov, Y.; Bovy, A.; Gechev, T.; Kostova, D.; Fernie, A. R.; Alseekh, S.: The genetic architecture of the pepper metabolome and the biosynthesis of its signature capsianoside metabolites. Current Biology 34 (18), pp. 4209 - 4223 (2024)

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160.

Journal Article

Badoni, S.; Pasion-Uy, E. A.; Kor, S.; Kim, S.-R.; Tiozon, R. J. N.; Misra, G.; Buenafe, R. J. Q.; Labarga, L. M.; Ramos-Castrosanto, A. R.; Pratap, V. et al.; Slamet-Loedin, I.; von Steimker, J.; Alseekh, S.; Fernie, A. R.; Kohli, A.; Khush, G. S.; Sreenivasulu, N.: Multiomics of a rice population identifies genes and genomic regions that bestow low glycemic index and high protein content. Proceedings of the National Academy of Sciences of the United States of America 121 (36), e2410598121 (2024)

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161.

Journal Article

Boix, M.; Garcia-Rodriguez, A.; Castillo, L.; Miró, B.; Hamilton, F.; Tolak, S.; Pérez, A.; Monte Bello, C.C.; Caldana, C.; Henriques, R.: 40S Ribosomal Protein S6 Kinase Integrates Daylength Perception and Growth Regulation in Arabidopsis thaliana. Plant Physiology 195 (4), pp. 3039 - 3052 (2024)

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162.

Journal Article

Gutschker, S.; Ruescher, D.; Rabbi, I.Y.; Rosado-Souza, L.; Pommerrenig, B.; Pauly, M.; Robertz, S.; van Doorn, A.M.; Schlereth, A.; Neuhaus, H.E. et al.; Fernie, A. R.; Reinert, S.; Sonnewald, U.; Zierer, W.: Carbon usage in yellow-fleshed Manihot esculenta storage roots shifts from starch biosynthesis to cell wall and raffinose biosynthesis via the myo-inositol pathway. The Plant Journal 119 (4), pp. 2045 - 2062 (2024)

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163.

Journal Article

Hayashi, K.; Fernie, A. R.: A neat wheat trick to hide genes from selection. Trends in Plant Science 29 (8), pp. 837 - 838 (2024)

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164.

Journal Article

Legen, J.; Lenzen, B.; Kachariya, N.; Feltgen, S.; Gao, Y.; Mergenthal, S.; Weber, W.; Klotzsch, E.; Zoschke, R.; Sattler, M. et al.; Schmitz-Linneweber, C.: A prion-like domain is required for phase separation and chloroplast RNA processing during cold acclimation in Arabidopsis. The Plant Cell 36 (8), pp. 2851 - 2872 (2024)

MPG.PuRe

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165.

Journal Article

Liu, Y.; Li, H.; Liu, J.; Wang, Y.; Jiang, C.; Zhou, Z.; Zhuo, L.; Li, W.; Fernie, A. R.; Jackson, D. et al.; Yan, J.; Luo, Y.: The additive function of YIGE2 and YIGE1 in regulating maize ear length. The Plant Journal 119 (3), pp. 1327 - 1335 (2024)

MPG.PuRe

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166.

Journal Article

Moshelion, M.; Dietz, K.-J.; Dodd, I. C.; Muller, B.; Lunn, J. E.: Guidelines for designing and interpreting drought experiments in controlled conditions. Journal of Experimental Botany 75 (16), pp. 4671 - 4679 (2024)

MPG.PuRe

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167.

Journal Article

Olivieri, P.; Zupok, A.; Yildiz, T.; Oltmanns, J.; Lehmann, A.; Sokolowska, E.; Skirycz, A.; Schünemann, V.; Leimkühler, S.: TusA influences Fe-S cluster assembly and iron homeostasis in E. coli by reducing the translation efficiency of Fur. Microbiology Spectrum 12 (8), e00556-24 (2024)

MPG.PuRe

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168.

Journal Article

Rahimi-Majd, M.; Leverett, A.; Neumann, A.; Kromdijk, J.; Nikoloski, Z.: Nonlinear models based on leaf architecture traits explain the variability of mesophyll conductance across plant species. Plant, Cell and Environment 47 (12), pp. 5158 - 5171 (2024)

MPG.PuRe

DOI

169.

Journal Article

Singh, P.; Kumari, A.; Khaladhar, V.C.; Singh, N.; Pathak, P.K.; Kumar, V.; Kumar, R.J.; Jain, P.; Thakur, J.K.; Fernie, A. R. et al.; Bauwe, H.; Raghavendra, A.S.; Gupta, K.J.: Serine hydroxymethyltransferase6 is involved in growth and resistance against pathogens via ethylene and lignin production in Arabidopsis. The Plant Journal 119 (4), pp. 1920 - 1936 (2024)

MPG.PuRe

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170.

Journal Article

Stolle, D.S.; Osterhoff, L.; Treimer, P.; Lambertz, J.; Karstens, M.; Keller, J.-M.; Gerlach, I.; Bischoff, A.; Dünschede, B.; Rödiger, A. et al.; Herrmann, C.; Baginsky, S.; Hofmann, E.; Zoschke, R.; Armbruster, U.; Nowaczyk, M.M.; Schünemann, D.: STIC2 selectively binds ribosome-nascent chain complexes in the cotranslational sorting of Arabidopsis thylakoid proteins. The EMBO Journal 43, pp. 4699 - 4719 (2024)

MPG.PuRe

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171.

Journal Article

Tariq, A.; Meng, M.; Jiang, X.; Bolger, A.; Beier, S.; Buchmann, J.P.; Fernie, A. R.; Wen, W.; Usadel, B.: In-depth exploration of the genomic diversity in tea varieties based on a newly constructed pangenome of Camellia sinensis. The Plant Journal 119 (4), pp. 2096 - 2115 (2024)

MPG.PuRe

DOI

172.

Journal Article

Yang, C.; Shen, S.; Zhan, C.; Li, Y.; Zhang, R.; Lv, Y.; Yang, Z.; Zhou, J.; Shi, Y.; Liu, X. et al.; Shi, J.; Zhang, D.; Fernie, A. R.; Luo, J.: Variation in a Poaceae-conserved fatty acid metabolic gene cluster controls rice yield by regulating male fertility. Nature Communications 15 (1), 6663 (2024)

MPG.PuRe

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173.

Journal Article

Yokoyama, R.: Enzyme promiscuity powers plant chemical diversity ー a case of prenyltransferases in biosynthesis of quinone derivatives. Plant Physiology 195 (4), pp. 2485 - 2487 (2024)

MPG.PuRe

DOI

174.

Journal Article

Zhu, F.; Wijesingha Ahchige, M.; Wen, W.; Cheng, Y.; Alseekh, S.; Fernie, A. R.: The natural variance of Arabidopsis secondary metabolism on extended darkness. Scientific Data 11 (1), 841 (2024)

MPG.PuRe

DOI

175.

Journal Article

Araguirang, G. E.; Venn, B.; Kelber, N.-M.; Feil, R.; Lunn, J. E.; Kleine, T.; Leister, D.; Mühlhaus, T.; Richter, A. S.: Spliceosomal complex components are critical for adjusting the C:N balance during high-light acclimation. The Plant Journal 119 (1), pp. 153 - 175 (2024)

MPG.PuRe

DOI

176.

Journal Article

Chen, J.; Zhang, Y.; Wei, J.; Hu, X.; Yin, H.; Liu, W.; Li, D.; Tian, W.; Hao, Y.; He, Z. et al.; Fernie, A. R.; Chen, W.: Beyond pathways: Accelerated flavonoids candidate identification and novel exploration of enzymatic properties using combined mapping populations of wheat. Plant Biotechnology Journal 22 (7), pp. 2033 - 2050 (2024)

MPG.PuRe

DOI

177.

Journal Article

Del Toro-De León, G.; van Boven, J.; Santos-González, J.; Jiao, W.-B.; Peng, H.; Schneeberger, K.; Köhler, C.: Epigenetic and transcriptional consequences in the endosperm of chemically induced transposon mobilization in Arabidopsis. Nucleic Acids Research 53 (15), pp. 8833 - 8848 (2024)

MPG.PuRe

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178.

Journal Article

Florez-Rueda, A.M.; Miguel, C.M.; Figueiredo, D.D.: Comparative transcriptomics of seed nourishing tissues: uncovering conserved and divergent pathways in seed plants. The Plant Journal 119 (2), pp. 1134 - 1157 (2024)

MPG.PuRe

DOI

179.

Journal Article

Jasinska, W.; Dindo, M.; Correa Cordoba, S. M.; Serohijos, A.W.R.; Laurino, P.; Brotman, Y.; Bershtein, S.: Correction to: Non-consecutive enzyme interactions within TCA cycle supramolecular assembly regulate carbon-nitrogen metabolism (Nature Communications, (2024), 15, 1, (5285), 10.1038/s41467-024-49646-7). Nature Communications 15 (1), 6196 (2024)

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180.

Journal Article

Olas, J. J.; Apelt, F.; Watanabe, M.; Hoefgen, R.; Wahl, V.: Corrigendum to “Developmental stage-specific metabolite signatures in Arabidopsis thaliana under optimal and mild nitrogen limitation” [Plant Sci. 303 (2021) 110746] (Plant Science (2021) 303, (S0168945220303526), (10.1016/j.plantsci.2020.110746)). Plant Science 344, 112102 (2024)

MPG.PuRe

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181.

Journal Article

Pérez-Alfocea, F.; Borghi, M.; Guerrero, J. J.; Jiménez, A. R.; Jiménez-Gómez, J. M.; Fernie, A. R.; Bartomeus, I.: Pollinator-assisted plant phenotyping, selection, and breeding for crop resilience to abiotic stresses. The Plant Journal 119 (1), pp. 56 - 64 (2024)

MPG.PuRe

DOI

182.

Journal Article

Pieri, A.; Beleggia, R.; Gioia, T.; Tong, H.; Di Vittori, V.; Frascarelli, G.; Bitocchi, E.; Nanni, L.; Bellucci, E.; Fiorani, F. et al.; Pecchioni, N.; Marzario, S.; De Quattro, C.; Limongi, A.; De Vita, P.; Rossato, M.; Schurr, U.; David, J.; Nikoloski, Z.; Papa, R.: Transcriptomic response to nitrogen availability reveals signatures of adaptive plasticity during tetraploid wheat domestication. Plant Cell 36 (9), pp. 3809 - 3823 (2024)

MPG.PuRe

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183.

Journal Article

Schann, K.; Bakker, J.; Boinot, M.; Kuschel, P.; He, H.; Nattermann, M.; Paczia, N.; Erb, T.; Bar-Even, A.; Wenk, S.: Design, construction and optimization of formaldehyde growth biosensors with broad application in biotechnology. Microbial Biotechnology 17 (7), e14527 (2024)

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184.

Journal Article

Schulz-Mirbach, H. A. M.; Kruesemann, J. L.; Andreadaki, T.; Nerlich, J. N.; Mavrothalassiti, E.; Boecker, S.; Schneider, P.; Weresow, M.; Abdelwahab, O.; Paczia, N. et al.; Dronsella, B.; Erb, T. J.; Bar-Even, A.; Klamt, S.; Lindner, S. N.: Engineering new-to-nature biochemical conversions by combining fermentative metabolism with respiratory modules. Nature Communications 15 (1), 6725 (2024)

MPG.PuRe

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185.

Journal Article

Tripathi, D.; Bhat, J.; Antoniou, C.; Kandhol, N.; Singh, V.; Fernie, A. R.; Fotopoulos, V.: Redox Regulation by Priming Agents Toward a Sustainable Agriculture. Plant and Cell Physiology 65 (7), pp. 1087 - 1102 (2024)

MPG.PuRe

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186.

Journal Article

Yin, Z.; Huang, W.; Li, K.; Fernie, A. R.; Yan, S.: Advances in mass spectrometry imaging for plant metabolomics—Expanding the analytical toolbox. The Plant Journal 119 (5), pp. 2168 - 2180 (2024)

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187.

Journal Article

Yoshida, T.; Mergner, J.; Yang, Z.; Liu, J.; Kuster, B.; Fernie, A. R.; Grill, E.: Integrating multi-omics data reveals energy and stress signaling activated by abscisic acid in Arabidopsis. The Plant Journal 119 (2), pp. 1112 - 1133 (2024)

MPG.PuRe

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188.

Journal Article

Chung, K. P.; Frieboese, D.; Waltz, F.; Engel, B.D.; Bock, R.: Identification and characterization of the COPII vesicle-forming GTPase Sar1 in Chlamydomonas. Plant Direct 8 (6), e614 (2024)

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189.

Journal Article

Hammel, A.; Cucos, L.-M.; Caras, I.; Ionescu, I.; Tucureanu, C.; Tofan, V.; Costache, A.; Onu, A.; Hoepfner, L.; Hippler, M. et al.; Neupert, J.; Popescu, C.-I.; Stavaru, C.; Branza-Nichita, N.; Bock, R.: The red alga Porphyridium as a host for molecular farming: Efficient production of immunologically active hepatitis C virus glycoprotein. PNAS 121 (24), e2400145121 (2024)

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190.

Journal Article

Jiang, C.; Fu, J.; Li, F.; Xia, K.; Li, S.; Chang, L.; Bock, R.; Zhang, J.: Plastid engineering with an efficient RNAi delivery system based on bacteriophage MS2 virus-like particles enhances plant resistance to cotton bollworm. Molecular Plant 17 (7), pp. 987 - 989 (2024)

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191.

Journal Article

Pei, L.; Gao, X.; Tian, X.; Liu, N.; Chen, M.; Fernie, A. R.; Li, H.: A microRNA528-ZmLac3 module regulates low phosphate tolerance in maize. The Plant Journal 118 (6), pp. 2233 - 2248 (2024)

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192.

Journal Article

Woźniak, N.J.; Sartori, K.; Kappel, C.; Tran, T.C.; Zhao, L.; Erban, A.; Gallinger, J.; Fehrle, I.; Jantzen, F.; Orsucci, M. et al.; Ninkovic, V.; Rosa, S.; Lenhard, M.; Kopka, J.; Sicard, A.: Convergence and molecular evolution of floral fragrance after independent transitions to self-fertilization. Current Biology 34 (12), pp. 2702 - 2711.e6 (2024)

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193.

Journal Article

Yuan, H.; Jiangfang, Y.; Liu, Z.; Su, R.; Li, Q.; Fang, C.; Huang, S.; Liu, X.; Fernie, A. R.; Luo, J.: WTV2.0: A high-coverage plant volatilomics method with a comprehensive selective ion monitoring acquisition mode. Molecular Plant 17 (6), pp. 972 - 985 (2024)

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194.

Journal Article

Yin, B.; Jia, J.; Sun, X.; Hu, X.; Ao, M.; Liu, W.; Tian, Z.; Liu, H.; Li, D.; Tian, W. et al.; Hao, Y.; Xia, X.; Sade, N.; Brotman, Y.; Fernie, A. R.; Chen, J.; He, Z.; Chen, W.: Dynamic metabolite QTL analyses provide novel biochemical insights into kernel development and nutritional quality improvement in common wheat. Plant Communications 5 (5), 100792 (2024)

MPG.PuRe

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195.

Journal Article

Bente, H.; Köhler, C.: Molecular basis and evolutionary drivers of endosperm-based hybridization barriers. Plant Physiology 195, pp. 155 - 169 (2024)

MPG.PuRe

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196.

Journal Article

Butel, N.; Köhler, C.: A family of maternally expressed auxin response factors trigger endosperm cellularization. Nature Plants 10, pp. 846 - 847 (2024)

MPG.PuRe

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197.

Journal Article

Butel, N.; Qiu, Y.; Xu, W.; Santos-González, J.; Köhler, C.: Parental conflict driven regulation of endosperm cellularization by a family of Auxin Response Factors. Nature Plants 10, pp. 1018 - 1026 (2024)

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198.

Journal Article

Dai, G.; Song, W.; Xu, H.; Tu, M.; Yu, C.; Li, Z.; Shang, J.; Jin, C.; Ding, C.; Zuo, L. et al.; Liu, Y.; Yan, W.; Zang, S.; Liu, K.; Zhang, Z.; Bock, R.; Qiu, B.: Hypothetical chloroplast reading frame 51 encodes a photosystem I assembly factor in cyanobacteria. Plant Cell 36 (5), pp. 1844 - 1867 (2024)

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199.

Journal Article

Fernie, A. R.; Bulut, M.: How cauliflower got its curd. Nature Genetics 56, pp. 1042 - 1044 (2024)

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200.

Journal Article

Gentry-Torfer, D.; Murillo, E.; Barrington, C. L.; Nie, S.; Leeming, M. G.; Suwanchaikasem, P.; Williamson, N. A.; Roessner, U.; Boughton, B. A.; Kopka, J. et al.; Martinez-Seidel, F.: Streamlining Protein Fractional Synthesis Rates Using SP3 Beads and Stable Isotope Mass Spectrometry: A Case Study on the Plant Ribosome. Bio-protocol 14 (9), e4981 (2024)

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Journal Article (4279)