Publications of the MPI

101.

Journal Article

Wu, X.-X.; Li, F.; Zhu, C.; Sun, S.-Y.; Mu, W.-H.; Ruf, S.; Bock, R.; Zhang, Y.; Zhou, F.: Protocol for the purification of the plastid-encoded RNA polymerase from transplastomic tobacco plants. STAR Protocols 6 (1), 103528 (2025)

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102.

Journal Article

Yokoyama, R.; Maeda, H.: Arabidopsis 3-Deoxy-d-Arabino-Heptulosonate 7-Phosphate (DAHP) Synthases of the Shikimate Pathway Display Both Manganese- and Cobalt-Dependent Activities. Plant Direct 9 (1), e70037 (2025)

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103.

Journal Article

Yu, Y.; Li, W.; Liu, Y.; Liu, Y.; Zhang, Q.; Ouyang, Y.; Ding, W.; Xue, Y.; Zou, Y.; Yan, J. et al.; Jia, A.; Yan, J.; Hao, X.; Gou, Y.; Zhai, Z.; Liu, L.; Zheng, Y.; Zhang, B.; Xu, J.; Yang, N.; Xiao, Y.; Zhuo, L.; Lai, Z.; Yin, P.; Liu, H.-J.; Fernie, A. R.; Jackson, D.; Yan, J.: A Zea genus-specific micropeptide controls kernel dehydration in maize. Cell 188, pp. 44 - 59 (2025)

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104.

Journal Article

D'Auria, J.C.; Fernie, A. R.: The BAHD and the bold: the mitochondria's role in alkaloid artistry. Trends in Plant Science 29 (12), pp. 1290 - 1291 (2024)

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105.

Journal Article

Domer, A.; Jasinska, W.; Rosental, L.; Shochat, E.; Alseekh, S.; Fernie, A. R.; Brotman, Y.; Ovadia, O.: Comparative analysis of the plasma metabolome of migrating passerines: novel insights into stopover metabolism. Journal of Avian Biology 2025 (2), e03331 (2024)

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106.

Journal Article

Fontanet-Manzaneque, J. B.; Laibach, N.; Herrero-García, I.; Coleto-Alcudia, V.; Blasco-Escámez, D.; Zhang, C.; Orduña, L.; Alseekh, S.; Miller, S.; Bjarnholt, N. et al.; Fernie, A. R.; Matus, J. T.; Caño-Delgado, A. I.: Untargeted mutagenesis of brassinosteroid receptor SbBRI1 confers drought tolerance by altering phenylpropanoid metabolism in Sorghum bicolor. Plant Biotechnology Journal 22 (12), pp. 3406 - 3423 (2024)

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107.

Journal Article

Guillory, A.; Fournier, J.; Kelner, A.; Hobecker, K.; Auriac, M.-C.; Frances, L.; Delers, A.; Pedinotti, L.; Le Ru, A.; Keller, J. et al.; Delaux, P.-M.; Gutjahr, C.; Frei Dit Frey, N.; de Carvalho-Niebel, F.: Annexin- and calcium-regulated priming of legume root cells for endosymbiotic infection. Nature Communications 15 (1), 10639 (2024)

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108.

Journal Article

He, J.; Hao, Y.; He, Y.; Li, W.; Shi, Y.; Khurshid, M.; Lai, D.; Ma, C.; Wang, X.; Li, J. et al.; Cheng, J.; Fernie, A. R.; Ruan, J.; Zhang, K.; Zhou, M.: Genome-wide associated study identifies FtPMEI13 gene conferring drought resistance in Tartary buckwheat. The Plant Journal 120 (6), pp. 2398 - 2419 (2024)

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109.

Journal Article

Jasinska, W.; Dindo, M.; Correa Cordoba, S. M.; Serohijos, A.W.R.; Laurino, P.; Brotman, Y.; Bershtein, S.: Non-consecutive enzyme interactions within TCA cycle supramolecular assembly regulate carbon-nitrogen metabolism. Nature Communications 15 (1), 5285 (2024)

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110.

Journal Article

Kanojia, A.; Lyall, R.; Sujeeth, N.; Alseekh, S.; Martinez Rivas, F.J.; Fernie, A. R.; Gechev, T.S.; Petrov, V.: Physiological and molecular insights into the effect of a seaweed biostimulant on enhancing fruit yield and drought tolerance in tomato. Plant Stress 14, 100692 (2024)

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111.

Journal Article

Lehr, P.P.; Erban, A.; Hartwig, R.P.; Wimmer, M.A.; Kopka, J.; Zörb, C.: Grapevine and maize: Two guard cell shaped strategies to cope with repeated drought stress. Plant Physiology and Biochemistry 217, 109262 (2024)

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112.

Journal Article

Li, B.; Armarego-Marriott, T.; Kowalewska, Ł.; Thiele, W.; Erban, A.; Ruf, S.; Kopka, J.; Schöttler, M. A.; Bock, R.: Membrane protein provision controls prothylakoid biogenesis in tobacco etioplasts. The Plant Cell 36 (12), pp. 4862 - 4880 (2024)

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113.

Journal Article

Luo, J.; He, C.; Yan, S.; Jiang, C.; Chen, A.; Li, K.; Zhu, Y.; Gui, S.; Yang, N.; Xiao, Y. et al.; Wu, S.; Zhang, F.; Liu, T.; Wang, J.; Huang, W.; Yang, Y.; Wang, H.; Yang, W.; Li, W.; Zhuo, L.; Fernie, A. R.; Zhan, J.; Wang, L.; Yan, J.: A metabolic roadmap of waxy corn flavor. Molecular Plant 17 (12), pp. 1883 - 1898 (2024)

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114.

Journal Article

Mazzarella, T.; Chialva, M.; de Souza, L. P.; Wang, J.Y.; Votta, C.; Tiozon, R.; Vaccino, P.; Salvioli di Fossalunga, A.; Sreenivasulu, N.; Asami, T. et al.; Fernie, A. R.; Al-Babili, S.; Lanfranco, L.; Fiorilli, V.: Effect of exogenous treatment with zaxinone and its mimics on rice root microbiota across different growth stages. Scientific Reports 14, 31374 (2024)

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115.

Journal Article

Orsi, E.; Schada von Borzyskowski, L.; Noack, S.; Nikel, P.I.; Lindner, S. N.: Automated in vivo enzyme engineering accelerates biocatalyst optimization. Nature Communications 15, 3447 (2024)

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116.

Journal Article

Pankaj, R.; Shoejaeyfar, S.; Figueiredo, D.D.: An epiQTL underlying asexual seed formation in Arabidopsis. Plant Reproduction 37, pp. 463 - 468 (2024)

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117.

Journal Article

Piotrowska, J.; Wawrzyńska, A.; Olszak, M.; Krzyszton, M.; Apodiakou, A.; Alseekh, S.; Ramos, J. M. L.; Hoefgen, R.; Kopriva, S.; Sirko, A.: Analysis of the quadruple lsu mutant reveals molecular determinants of the role of LSU proteins in sulfur assimilation in Arabidopsis. The Plant Journal 120 (6), pp. 2919 - 2936 (2024)

MPG.PuRe

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118.

Journal Article

Tiozon, R. J. N.; Alseekh, S.; Fernie, A. R.; Bonto, A. P.; Yu, J.; Buenafe, R. J. Q.; Sreenivasulu, N.: Comprehensive lipidomic insights of differentially accumulating lipids in large pigmented rice sprout collection and the changes in the starch composition upon germination. Food Chemistry 460 (Part 2), 140677 (2024)

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119.

Journal Article

Weiller, F.; Diniz, I.; Pimentel, D.; Erban, A.; Reis, P.; Soares, F.; Rego, C.; Kopka, J.; Fortes, A.M.: Metabolomic analysis of grapes and leaves from symptomatic and asymptomatic Vitis vinifera grapevines with Esca disease. Current Opinion in Plant Biology 40, 100378 (2024)

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120.

Journal Article

Wijesingha Ahchige, M.; Fisher, J.; Sokolowska, E.; Lyall, R.; Illing, N.; Skirycz, A.; Zamir, D.; Alseekh, S.; Fernie, A. R.: The variegated canalized-1 tomato mutant is linked to photosystem assembly. Computational and Structural Biotechnology Journal 23, pp. 3967 - 3988 (2024)

MPG.PuRe

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121.

Journal Article

Yokoyama, R.: Spatial sugar separation is key to how fast you get old. Plant Physiology 196 (4), pp. 2269 - 2270 (2024)

MPG.PuRe

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122.

Journal Article

Bortolami, G.; de Werk, T.; Larter, M.; Thonglim, A.; Mueller-Roeber, B.; Balazadeh, S.; Lens, F.: Integrating gene expression analysis and ecophysiological responses to water deficit in leaves of tomato plants. Scientific Reports 14, 29024 (2024)

MPG.PuRe

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123.

Journal Article

Dziasek, K.; Santos-González, J.; Wang, K.; Qiu, Y.; Zhu, J.; Rigola, D.; Nijbroek, K.; Köhler, C.: Dosage-sensitive maternal siRNAs determine hybridization success in Capsella. Nature Plants 10, pp. 1969 - 1983 (2024)

MPG.PuRe

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124.

Journal Article

Farag, M.; Baky, M.; Kuehnhold, H.; Kriege, E.; Kunzmann, A.; Alseekh, S.; Al-Hammady, M.; Ezz, S.; Fernie, A. R.; Westphal, H. et al.; Stuhr, M.: Effects of thermal and UV stress on the polar and non-polar metabolome of photosymbiotic jellyfish and sea anemones. Marine Pollution Bulletin 208, 116983 (2024)

MPG.PuRe

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125.

Journal Article

Fichtner, F.; Humphreys, J.L.; Barbier, F.F.; Feil, R.; Westhoff, P.; Moseler, A.; Lunn, J.E.; Smith, S.M.; Beveridge, C.A.: Strigolactone signalling inhibits trehalose 6-phosphate signalling independently of BRC1 to suppress shoot branching. New Phytologist 244 (3), pp. 900 - 913 (2024)

MPG.PuRe

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126.

Journal Article

Huang, X.; He, Y.; Zhang, K.; Shi, Y.; Zhao, H.; Lai, D.; Lin, H.; Wang, X.; Yang, Z.; Xiao, Y. et al.; Li, W.; Ouyang, Y.; Woo, S.H.; Quinet, M.; Georgiev, M.I.; Fernie, A. R.; Liu, X.; Zhou, M.: Evolution and Domestication of a Novel Biosynthetic Gene Cluster Contributing to the Flavonoid Metabolism and High-Altitude Adaptability of Plants in the Fagopyrum Genus. Advanced Science 11 (43), 2403603 (2024)

MPG.PuRe

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127.

Journal Article

Kazakov, P.; Alseekh, S.; Ivanova, V.; Gechev, T.: Biostimulant-Based Molecular Priming Improves Crop Quality and Enhances Yield of Raspberry and Strawberry Fruits. Metabolites 14 (11), 594 (2024)

MPG.PuRe

DOI

128.

Journal Article

Lázaro-Gimeno, D.; Ferrari, C.; Delhomme, N.; Johansson, M.; Sjölander, J.; Singh, R. K.; Mutwil, M.; Eriksson, M. E.: The circadian clock participates in seasonal growth in Norway spruce (Picea abies). Tree Physiology 44 (11), tpae139 (2024)

MPG.PuRe

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129.

Journal Article

Liu, F.; Fernie, A. R.; Zhang, Y.: Can a nitrogen-fixing organelle be engineered within plants? Trends in Plant Science 29 (11), pp. 1168 - 1171 (2024)

MPG.PuRe

DOI

130.

Journal Article

Peng, H.: In the Spotlight: Journey from a Single Cell to a Flourishing Forest. Physiologia Plantarum 176 (6), e14609 (2024)

MPG.PuRe

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131.

Journal Article

Razaghi-Moghadam, Z.; Soleymani Babadi, F.; Nikoloski, Z.: Harnessing the optimization of enzyme catalytic rates in engineering of metabolic phenotypes. PLOS Computational Biology 20 (11), e1012576 (2024)

MPG.PuRe

DOI

132.

Journal Article

Schulz-Mirbach, H.; Wichmann, P.; Satanowski, A.; Meusel, H.; Wu, T.; Nattermann, M.; Burgener, S.; Paczia, N.; Bar-Even, A.; Erb, T. J.: New-to-nature CO2-dependent acetyl-CoA assimilation enabled by an engineered B12-dependent acyl-CoA mutase. Nature Communications 15, 10235 (2024)

MPG.PuRe

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133.

Journal Article

Wang, Y.; Strauss, S.; Smith, R. S.; Sampathkumar, A.: Actin-mediated avoidance of tricellular junction influences global topology at the Arabidopsis shoot apical meristem. Cell Reports 43 (11), 114844 (2024)

MPG.PuRe

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134.

Journal Article

Wojciechowska, I.; Mukherjee, T.; Knox-Brown, P.; Hu, X.; Khosla, A.; Subedi, B.; Ahmad, B.; Mathews, G.L.; Panagakis, A.A.; Thompson, K.A. et al.; Peery, S.T.; Szlachetko, J.; Thalhammer, A.; Hincha, D. K.; Skirycz, A.; Schrick, K.: Arabidopsis PROTODERMAL FACTOR2 binds lysophosphatidylcholines and transcriptionally regulates phospholipid metabolism. New Phytologist 244 (4), pp. 1498 - 1518 (2024)

MPG.PuRe

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135.

Journal Article

Che, Y.; Ding, Z.; Shen, C.; Fernie, A. R.; Tang, X.; Yao, Y.; Liu, J.; Wang, Y.; Li, R.; Guo, J.: Physiological and Microstructure Analysis Reveals the Mechanism by Which Formic Acid Delays Postharvest Physiological Deterioration of Cassava. Antioxidants: open access journal 13 (10), 1245 (2024)

MPG.PuRe

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136.

Journal Article

Ebert, A.; Alseekh, S.; D´Andrea, L.; Roessner, U.; Bock, R.; Kopka, J.: Detailed Profiling of 17-Hydroxygeranyllinalool Diterpene Glycosides from Nicotiana Species Reveals Complex Reaction Networks of Conjugation Isomers. Metabolites 14 (10), 562 (2024)

MPG.PuRe

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137.

Journal Article

El-Shiekh, R. A.; Elshimy, R.; Mandour, A. A.; Kassem, H. A. H.; Khaleel, A. E.; Alseekh, S.; Fernie, A. R.; Salem, M. A.: Phytochemical characterisation of leaves and stems of Murraya koenigii (L.) Sprengel and Murraya paniculata (L.) Jack and their antibacterial activity against multidrug-resistant Acinetobacter baumannii bacterial infection. International journal of food science & technology 59 (10), pp. 7998 - 8010 (2024)

MPG.PuRe

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138.

Journal Article

Göbel, A.-M.; Zhou, S.; Wang, Z.; Tzourtzou, S.; Himmelbach, A.; Zheng, S.; Pradillo, M.; Liu, C.; Jiang, H.: Mutations of PDS5 genes enhance TAD-like domain formation Arabidopsis thaliana. Nature Communications 15 (1), 9308 (2024)

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139.

Journal Article

Lima, R. B.; Pankaj, R.; Ehlert, S. T.; Finger, P.; Fröhlich, A.; Bayle, V.; Landrein, B.; Sampathkumar, A.; Figueiredo, D.D.: Seed coat-derived brassinosteroid signaling regulates endosperm development. Nature Communications 15 (1), 9352 (2024)

MPG.PuRe

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140.

Journal Article

Liu, Q.; Zhou, Y.; Flores Castellanos, J.; Fettke, J.: The maltose-related starch degradation pathway promotes the formation of large and spherical transitory starch granules. The Plant Journal 120 (2), pp. 712 - 728 (2024)

MPG.PuRe

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141.

Journal Article

Naake, T.; D'Auria, J.; Fernie, A. R.; Scossa, F.: Phylogenomic and synteny analysis of BAHD and SCP/SCPL gene families reveal their evolutionary histories in plant specialized metabolism. Philosophical Transactions of the Royal Society of London, Series B: Biological Sciences 379 (1914), 20230349 (2024)

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142.

Journal Article

Qiu, Y.; Li, Z.; Köhler, C.: Ancestral duplication of MADS-box genes in land plants empowered the functional divergence between sporophytes and gametophytes. New Phytologist 244 (2), pp. 358 - 363 (2024)

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143.

Journal Article

Rolo, D.; Sandoval-Ibanez, O.; Thiele, W.; Schöttler, M. A.; Gerlach, I.; Zoschke, R.; Schwartzmann, J.; Meyer, E. H.; Bock, R.: CO-EXPRESSED WITH PSI ASSEMBLY1 (CEPA1) is a photosystem I assembly factor in Arabidopsis. The Plant Cell 36 (10), pp. 4179 - 4211 (2024)

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144.

Journal Article

Rüscher, D.; Vasina, V. V.; Knoblauch, J.; Bellin, L.; Pommerrenig, B.; Alseekh, S.; Fernie, A. R.; Neuhaus, H. E.; Knoblauch, M.; Sonnewald, U. et al.; Zierer, W.: Symplasmic phloem loading and subcellular transport in storage roots are key factors for carbon allocation in cassava. Plant Physiology 196 (2), pp. 1322 - 1339 (2024)

MPG.PuRe

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145.

Journal Article

Saß, A.; Schneider, R.: Novel molecular insights into the machinery driving secondary cell wall synthesis and patterning. Current Opinion in Plant Biology 81, 102614 (2024)

MPG.PuRe

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146.

Journal Article

Tóth, D.; Tengölics, R.; Aarabi, F.; Karlsson, A.; Vidal-Meireles, A.; Kovács, L.; Kuntam, S.; Körmöczi, T.; Fernie, A. R.; Hudson, E. P. et al.; Papp, B.; Tóth, S. Z.: Chloroplastic ascorbate modifies plant metabolism and may act as a metabolite signal regardless of oxidative stress. Plant Physiology 196 (2), pp. 1691 - 1711 (2024)

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147.

Journal Article

Tran, T. C.; Mähl, K.; Kappel, C.; Dakhiya, Y.; Sampathkumar, A.; Sicard, A.; Lenhard, M.: Altered interactions between cis-regulatory elements partially resolve BLADE-ON-PETIOLE genetic redundancy in Capsella rubella. The Plant Cell 36 (10), pp. 4637 - 4657 (2024)

MPG.PuRe

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148.

Journal Article

Avidan, O.; Martins, M. C. M.; Feil, R.; Lohse, M.; Giorgi, F. M.; Schlereth, A.; Lunn, J. E.; Stitt, M.: Direct and indirect responses of the Arabidopsis transcriptome to an induced increase in trehalose 6-phosphate. Plant Physiology 196 (1), pp. 409 - 431 (2024)

MPG.PuRe

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149.

Journal Article

Dorrell, R. G.; Zhang, Y.; Liang, Y.; Gueguen, N.; Nonoyama, T.; Croteau, D.; Penot, M.; Adiba, S.; Bailleul, B.; Gros, V. et al.; Karlusich, P.; José, J.; Zweig, N.; Fernie, A. R.; Jouhet, J.; Maréchal, E.; Bowler, C.: Complementary environmental analysis and functional characterization of lower glycolysis-gluconeogenesis in the diatom plastid. The Plant Cell 36 (9), pp. 3584 - 3610 (2024)

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150.

Journal Article

Fu, C.-C.; Huang, B.-X.; Wang, S.-S.; Song, Y.-C.; Metok, D.; Tan, Y.-X.; Fan, T.-P.; Fernie, A. R.; Zargar, M.; Wang, Y. et al.; Chen, M.-X.; Yu, L.-W.; Zhu, F.-Y.: Deciphering the roles of bacterial and fungal communities in the formation and quality of agarwood. Stress Biology 4, 40 (2024)

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Journal Article (4279)