Journal Article (171)

Journal Article
Skirycz, A.; Memmi, S.; de Bodt, S.; Maleux, K.; Obata, T.; Fernie, A. R.; Devreese, B.; Inze, D.: A Reciprocal (15)N-Labeling Proteomic Analysis of Expanding Arabidopsis Leaves Subjected to Osmotic Stress Indicates Importance of Mitochondria in Preserving Plastid Functions. Journal of Proteome Research 10 (3), pp. 1018 - 1029 (2011)
Journal Article
Skirycz, A.; Vandenbroucke, K.; Clauw, P.; Maleux, K.; De Meyer, B.; Dhondt, S.; Pucci, A.; Gonzalez, N.; Hoeberichts, F.; Tognetti, V. B. et al.; Galbiati, M.; Tonelli, C.; Van Breusegem, F.; Vuylsteke, M.; Inze, D.: Survival and growth of Arabidopsis plants given limited water are not equal. Nature Biotechnology 29 (3), pp. 212 - 214 (2011)
Journal Article
Steinbrenner, A. D.; Gomez, S.; Osorio, S.; Fernie, A. R.; Orians, C. M.: Herbivore-Induced Changes in Tomato (Solanum lycopersicum) Primary Metabolism: A Whole Plant Perspective. Journal of Chemical Ecology 37 (12), pp. 1294 - 1303 (2011)
Journal Article
Steinhauser, M.-C.; Steinhauser, D.; Gibon, Y.; Bolger, M.; Arrivault, S.; Usadel, B.; Zamir, D.; Fernie, A. R.; Stitt, M.: Identification of Enzyme Activity Quantitative Trait Loci in a Solanum lycopersicum X Solanum pennellii Introgression Line Population. Plant Physiology 157 (3), pp. 998 - 1014 (2011)
Journal Article
Strenkert, D.; Schmollinger, S.; Schroda, M.: Protocol: methodology for chromatin immunoprecipitation (ChIP) in Chlamydomonas reinhardtii. Plant Methods 7, p. 35 (2011)
Journal Article
Strenkert, D.; Schmollinger, S.; Sommer, F.; Schulz-Raffelt, M.; Schroda, M.: Transcription Factor-Dependent Chromatin Remodeling at Heat Shock and Copper-Responsive Promoters in Chlamydomonas reinhardtii. Plant Cell 23 (6), pp. 2285 - 2301 (2011)
Journal Article
Stuttmann, J.; Hubberten, H.-M.; Rietz, S.; Kaur, J.; Muskett, P.; Guerois, R.; Bednarek, P.; Hoefgen, R.; Parker, J. E.: Perturbation of Arabidopsis Amino Acid Metabolism Causes Incompatibility with the Adapted Biotrophic Pathogen Hyaloperonospora arabidopsidis. Plant Cell 23 (7), pp. 2788 - 2803 (2011)
Journal Article
Thelin, L.; Mutwil, M.; Sommarin, M.; Persson, S.: Diverging functions among calreticulin isoforms in higher plants. Plant Signaling & Behavior 6 (6), pp. 905 - 910 (2011)
Journal Article
Thiel, J.; Rolletschek, H.; Friedel, S.; Lunn, J. E.; Nguyen, T. H.; Feil, R.; Tschiersch, H.; Mueller, M.; Borisjuk, L.: Seed-specific elevation of non-symbiotic hemoglobin AtHb1: beneficial effects and underlying molecular networks in Arabidopsis thaliana. BMC Plant Biology 11, p. 48 (2011)
Journal Article
Timm, S.; Florian, A.; Jahnke, K.; Nunes-Nesi, A.; Fernie, A. R.; Bauwe, H.: The Hydroxypyruvate-Reducing System in Arabidopsis: Multiple Enzymes for the Same End. Plant Physiology 155 (2), pp. 694 - 705 (2011)
Journal Article
Toepel, J.; Albaum, S. P.; Arvidsson, S.; Goesmann, A.; La Russa, M.; Rogge, K.; Kruse, O.: Construction and evaluation of a whole genome microarray of Chlamydomonas reinhardtii. BMC Genomics 12, p. 579 (2011)
Journal Article
Tohge, T.; Mettler, T.; Arrivault, S.; Carroll, A. J.; Stitt, M.; Fernie, A. R.: From models to crop species: caveats and solutions for translational metabolomics. Frontiers in Plant Science 2, p. 61 (2011)
Journal Article
Tohge, T.; Ramos, M. S.; Nunes-Nesi, A.; Mutwil, M.; Giavalisco, P.; Steinhauser, D.; Schellenberg, M.; Willmitzer, L.; Persson, S.; Martinoia, E. et al.; Fernie, A. R.: Toward the storage metabolome: profiling the barley vacuole. Plant Physiology 157 (3), pp. 1469 - 1482 (2011)
Journal Article
Winck, F. V.; Kwasniewski, M.; Wienkoop, S.; Mueller-Roeber, B.: An Optimized Method for the Isolation of Nuclei from Chlamydomonas Reinhardtii (Chlorophyceae). Journal of Phycology 47 (2), pp. 333 - 340 (2011)
Journal Article
Wolff, P.; Weinhofer, I.; Seguin, J.; Roszak, P.; Beisel, C.; Donoghue, M.T.A.; Spillane, C.; Nordborg, M.; Rehmsmeier, M.; Köhler, C.: High-Resolution analysis of parent-of-origin allelic expression in the Arabidopsis endosperm. PLoS Genetics 7 (6), e1002126 (2011)
Journal Article
Yazdanbakhsh, N.; Fisahn, J.: Stable diurnal growth rhythms modulate root elongation of Arabidopsis thaliana. Plant Root 5, pp. 17 - 23 (2011)
Journal Article
Yazdanbakhsh, N.; Fisahn, J.: Mutations in leaf starch metabolism modulate the diurnal root growth profiles of Arabidopsis thaliana. Plant Signaling & Behavior 6 (7), pp. 995 - 998 (2011)
Journal Article
Yazdanbakhsh, N.; Sulpice, R.; Graf, A.; Stitt, M.; Fisahn, J.: Circadian control of root elongation and C partitioning in Arabidopsis thaliana. Plant Cell and Environment 34 (6), pp. 877 - 894 (2011)
Journal Article
Zabalza, A.; Orcaray, L.; Igal, M.; Schauer, N.; Fernie, A. R.; Geigenberger, P.; van Dongen, J. T.; Royuela, M.: Unraveling the role of fermentation in the mode of action of acetolactate synthase inhibitors by metabolic profiling. Journal of Plant Physiology 168 (13), pp. 1568 - 1575 (2011)
Journal Article
Zhang, G.; Lukoszek, R.; Mueller-Roeber, B.; Ignatova, Z.: Different sequence signatures in the upstream regions of plant and animal tRNA genes shape distinct modes of regulation. Nucleic Acids Research 39 (8), pp. 3331 - 3339 (2011)
Journal Article
Zuther, E.; Hoermiller, I. I.; Heyer, A. G.: Evidence against sink limitation by the sucrose-to-starch route in potato plants expressing fructosyltransferases. Physiologia Plantarum 143 (2), pp. 115 - 125 (2011)

Book Chapter (10)

Book Chapter
Allwood, J. W.; De Vos, R. C.H.; Moing, A.; Deborde, C.; Erban, A.; Kopka, J.; Goodacre, R.; Hall, R. D.: Plant metabolomics and its potential for systems biology research: background concepts, technology and methodology. In: Methods in Enzymology, Vol. 500, pp. 299 - 336 (Eds. Jameson, D.; Verma, M.; Westerhoff, H.V.). Elsevier - Academic Press, Amsterdam, NED (2011)
Book Chapter
Endler, A.; Baginsky, S.: Use of Phosphoproteomics to Study Posttranslational Protein Modifications in Arabidopsis Chloroplasts. In: Chloroplast Research in Arabidopsis: Methods and Protocols, Vol II, pp. 283 - 296 (2011)
Book Chapter
Fernie, A. R.; Keurentjes, J. J. B.: Genetics, genomics and metabolomics. In: The biology of plant metabolomics, 8, 2011/05/03 Ed., pp. 219 - 260 (Ed. Hall, R. D.). Blackwell-Wiley, London, UK (2011)
Book Chapter
Kopka, J.; Walther, D.; Allwood, J. W.; Goodacre, R.: Progress in chemometrics and biostatistics for plant applications: Or a good red wine is a bad white wine. In: The biology of plant metabolomics, 10, 2011/05/03 Ed., pp. 317 - 342 (Ed. Hall, R. D.). Blackwell-Wiley, London, UK (2011)
Book Chapter
May, P.; Christian, N.; Ebenhoeh, O.; Weckwerth, W.; Walther, D.: Integration of proteomic and metabolomic profiling as well as metabolic modeling for the functional analysis of metabolic networks. In: Bioinformatics for Comparative Proteomics, 21, 2010/12/01 Ed., pp. 341 - 363 (Eds. Wu, C. H.; Chen, C.). Humana Press Inc., Totowa, NJ, USA (2011)
Book Chapter
Persson, S.; Sørensen, I.; Moller, I.; Willats, W.; Pauly, M.: Dissection of Plant Cell Walls by High-Throughput Methods. In: Plant Polysaccharides, Biosynthesis and Bioengineering, 2, 2010/11/23 Ed., pp. 43 - 64 (Ed. Ulvskov, P.). Wiley-Blackwell, Oxford, UK (2011)
Book Chapter
Redestig, H.; Szymanski, J.; Hirai, M. Y.; Selbig, J.; Willmitzer, L.; Saito, K.; Nikoloski, Z.: Data integration, Metabolic Networks and Systems Biology. In: Biology of Plant Metabolomics, 9 (Ed. Hall, R. D.). Wiley-Blackwell, Oxford, UK (2011)
Book Chapter
Ruf, S.; Bock, R.: In vivo analysis of RNA editing in plastids. In: RNA and DNA Editing: Methods and Protocols, 8, pp. 137 - 150 (Ed. Aphasizhev, R.). Humana Press Inc., Totowa, NJ, USA (2011)
Book Chapter
Scheible, W.-R.; Pant, B. D.; Musialak-Lange, M.; Nuc, P.: Nutrient-responsive plant microRNAs. In: Non Coding RNAs in Plants, pp. 313 - 337 (Eds. Erdmann, V.; Barciszewski, J.). Springer-Verlag, Berlin, Heidelberg (2011)
Book Chapter
Zoschke, R.; Kupsch, C.; Schmitz-Linneweber, C.: RNA-Binding Proteins Required for Chloroplast RNA Processing. In: PLANT MITOCHONDRIA, pp. 177 - 203 (2011)

Conference Paper (1)

Conference Paper
Araujo, W. L.; Trofimova, L.; Yu, K.; Steinhauser, D.; Krall, L.; Fernie, A. R.; Bunik, V. I.: On the role of the mitochondrial 2-oxoglutarate dehydrogenase complex in the amino acid metabolism. Amino Acids 41, p. S39 - S39 (2011)

Meeting Abstract (1)

Meeting Abstract
Goehring, I.; Sauter, N. S.; Catchpole, G.; Assmann, A.; Shu, L.; Zien, K. S.; Moehlig, M.; Pfeiffer, A. F.; Oberholzer, J.; Willmitzer, L. et al.; Spranger, J.; Maedler, K.: Identification of an intracellular metabolic signature impairing beta cell function in the rat beta cell line INS-1E and human islets. In Diabetologia, 53 (10), pp. 2584 - 2594. (2011)

Other (2)

Fernie, A. R.; Aharoni, A.; Willmitzer, L.; Stitt, M.; Tohge, T.; Kopka, J.; Carroll, A. J.; Saito, K.; Fraser, P. D.; DeLuca, V.: Recommendations for Reporting Metabolite Data, The Plant Cell 23, pp. 2477 - 2482 (2011)
van Dongen, J. T.; Nikoloski, Z.: Modeling alternatives for interpreting the change in oxygen-consumption rates during hypoxic conditions, New Phytologist 190, pp. 273 - 276 (2011)

Editorial (2)

Fernie, A. R.: Editorial overview - the Computational approaches in aid of advancing understanding in Plant Physiology. Frontiers in Plant Science 2, p. 78 (2011)
Gupta, K. J.; Hincha, D. K.; Mur, L. A. J.: NO way to treat a cold. New Phytologist 189 (2), pp. 360 - 363 (2011)

Patent (1)

Milo, R.; Bar-Even, A.; Noor, E.: Enzymatic systems for carbon fixation and methods of generating same. WO2011099006A2 (2011)

Review Article (21)

Review Article
Santos, A. P.; Serra, T.; Figueiredo, D.D.; Barros, P.; Lourenço, T.; Chander, S.; Oliveira, M. M.; Saibo, N. J.M.: Transcription Regulation of Abiotic Stress Responses in Rice: A Combined Action of Transcription Factors and Epigenetic Mechanisms. (2011)
Review Article
Larhlimi, A.; Blachon, S.; Selbig, J.; Nikoloski, Z.: Robustness of metabolic networks: A review of existing definitions. (2011)
Review Article
Araujo, W. L.; Fernie, A. R.; Nunes-Nesi, A.: Control of stomatal aperture: A renaissance of the old guard. (2011)
Review Article
Araujo, W. L.; Tohge, T.; Ishizaki, K.; Leaver, C. J.; Fernie, A. R.: Protein degradation - an alternative respiratory substrate for stressed plants. (2011)
Review Article
Arnold, A.; Nikoloski, Z.: A quantitative comparison of CalvinBenson cycle models. (2011)
Review Article
Brownfield, L.; Köhler, C.: Unreduced gamete formation in plants: mechanisms and prospects. (2011)
Review Article
Endler, A.; Persson, S.: Cellulose Synthases and Synthesis in Arabidopsis. (2011)
Review Article
Fernie, A. R.; Klee, H. J.: The use of natural genetic diversity in the understanding of metabolic organization and regulation. (2011)
Review Article
Greiner, S.; Rauwolf, U.; Meurer, J.; Herrmann, R. G.: The role of plastids in plant speciation. (2011)
Review Article
Gupta, K. J.; Fernie, A. R.; Kaiser, W. M.; van Dongen, J. T.: On the origins of nitric oxide. (2011)
Review Article
Haferkamp, I.; Fernie, A. R.; Neuhaus, H. E.: Adenine nucleotide transport in plants: much more than a mitochondrial issue. (2011)
Review Article
Köhler, C.; Kradolfer, D.: Epigenetic mechanisms in the endosperm and their consequences for the evolution of flowering plants. (2011)
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