Publications of the MPI

Journal Article (193)

151.

Journal Article

Wu, P.-Y.; Stich, B.; Weisweiler, M.; Shrestha, A.; Erban, A.; Westhoff, P.; Inghelandt, D. V.: Improvement of prediction ability by integrating multi-omic datasets in barley. BMC Genomics 23 (1), 200 (2022)

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152.

Journal Article

Eiteneuer, C.; Velasco, D.; Atemia, J.; Wang, D.; Schwacke, R.; Wahl, V.; Schrader, A.; Reimer, J.J.; Fahrner, S.; Pieruschka, R. et al.; Schurr, U.; Usadel, B.; Hallab, A.: GXP: Analyze and Plot Plant Omics Data in Web Browsers. Plants 11 (6), 745 (2022)

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153.

Journal Article

Sepulveda, C.; Guzman, M.; Li, Q.; Villaecija-Aguilar, J.; Martinez, S.; Kamran, M.; Khosla, A.; Liu, W.; Gendron, J.; Gutjahr, C. et al.; Waters, M.; Nelson, D.: KARRIKIN UP-REGULATED F-BOX 1 (KUF1) imposes negative feedback regulation of karrikin and KAI2 ligand metabolism in Arabidopsis thaliana. Proceedings of the National Academy of Sciences of the United States of America 119 (11), e2112820119 (2022)

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154.

Journal Article

Borghi, M.; Arrivault, S.; Günther, M.; Medeiros, D.B.; Dell'Aversana, E.; Fusco, G.; Carillo, P.; Ludwig, M.; Fernie, A. R.; Lunn, J. E. et al.; Stitt, M.: Metabolic profiles in C-3, C-3-C-4 intermediate, C-4-like, and C-4 species in the genus Flaveria. Journal of Experimental Botany 73 (5), pp. 1581 - 1601 (2022)

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155.

Journal Article

Fernie, A. R.: On the role of transposons in balancing drought tolerance and yield. Trends in Plant Science 28 (3), pp. 262 - 263 (2022)

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156.

Journal Article

Fichtner, F.; Barbier, F.; Kerr, S.; Dudley, C.; Cubas, P.; Turnbull, C.; Brewer, P.; Beveridge, C.: Plasticity of bud outgrowth varies at cauline and rosette nodes in Arabidopsis thaliana. Plant Physiology 188 (3), pp. 1586 - 1603 (2022)

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157.

Journal Article

Meng, Y.; Varshney , K.; Incze, N.; Badics, E.; Kamran, M.; Davies, S.; Oppermann, L.; Magne, K.; Dalmais, M.; Bendahmane, A. et al.; Sibout, R.; Vogel, J.; Laudencia-Chingcuanco, D.; Bond, C.; Soos, V.; Gutjahr, C.; Waters, M.: KARRIKIN INSENSITIVE2 regulates leaf development, root system architecture and arbuscular-mycorrhizal symbiosis in Brachypodium distachyon. The Plant Journal 109 (6), pp. 1559 - 1574 (2022)

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158.

Journal Article

Perlikowski, D.; Lechowicz, K.; Skirycz, A.; Eckhardt, Ä.; Pawłowicz, I.; Kosmala, A.: The Role of Triacylglycerol in the Protection of Cells against Lipotoxicity under Drought in Lolium multiflorum/Festucaarundinacea Introgression Forms. Plant and Cell Physiology 63 (3), pp. 353 - 368 (2022)

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159.

Journal Article

Rui, G.; Bourceret, A.; Guan, R.; Dorau, K.; Mansfeldt, T.; Omidbakhshfard, M. A.; Medeiros, D.B.; Fernie, A. R.; Hofmann, J.; Sonnewald, U. et al.; Mayer, J.; Gerlach, N.; Bucher, M.; Garrido-Oter, R.; Spaepen, S.; Schulze-Lefert, P.: Maize Field Study Reveals Covaried Microbiota and Metabolic Changes in Roots over Plant Growth. mBio 13 (2), e02584-21 (2022)

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160.

Journal Article

Skirycz, A.; Caldana, C.; Fernie, A. R.: Regulation of Plant Primary Metabolism - How Results From Novel Technologies Are Extending Our Understanding From Classical Targeted Approaches. Critical Reviews in Plant Sciences 41 (1), pp. 32 - 51 (2022)

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161.

Journal Article

Trösch, R.; Ries, F.; Westrich, L. D.; Gao, Y.; Herkt, C.; Hoppstädter, J.; Heck-Roth, J.; Mustas, M.; Scheuring, D.; Choquet, Y. et al.; Räschle, M.; Zoschke, R.; Willmund, F.: Fast and global reorganization of the chloroplast protein biogenesis network during heat acclimation. The Plant Cell 34 (3), pp. 1075 - 1099 (2022)

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162.

Journal Article

Zhang, Z.; Shi, Q.; Wang, B.; Ma, A.; Wang, Y.; Xue, Q.; Shen, B.; Hamaila, H.; Tang, T.; Qi, X. et al.; Fernie, A. R.; Luo, J.; Li, X.: Jujube metabolome selection determined the edible properties acquired during domestication. The Plant Journal 109 (5), pp. 1116 - 1133 (2022)

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163.

Journal Article

Chen, Q.; Shen, P.; Bock, R.; Li, S.; Zhang, J.: Comprehensive analysis of plastid gene expression during fruit development and ripening of kiwifruit. Plant Cell Reports 41, pp. 1103 - 1114 (2022)

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164.

Journal Article

Fernie, A. R.; Alseekh, S.: Metabolomic selection–based machine learning improves fruit taste prediction. Proceedings of the National Academy of Sciences of the United States of America 199 (9), e2201078119 (2022)

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165.

Journal Article

Salem, M.A.; Aborehab, N.; Al-Karmalawy, A.; Fernie, A. R.; Alseekh, S.; Ezzat, S.: Potential Valorization of Edible Nuts By-Products: Exploring the Immune-Modulatory and Antioxidants Effects of Selected Nut Shells Extracts in Relation to Their Metabolic Profiles. Antioxidants: open access journal 11 (3), 462 (2022)

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166.

Journal Article

Salem, M.A.; Ezzat, S.M.; Ahmed, K.A.; Alseekh, S.; Fernie, A. R.; Essam, R.M.: A Comparative Study of the Antihypertensive and Cardioprotective Potentials of Hot and Cold Aqueous Extracts of Hibiscus sabdariffa L. in Relation to Their Metabolic Profiles. Frontiers in Pharmacology 13, 840478 (2022)

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167.

Journal Article

Kirst, H.; Ferlez, B.H.; Lindner, S. N.; Cotton, C. A. R.; Bar-Even, A.; Kerfeld, C.A.: Toward a glycyl radical enzyme containing synthetic bacterial microcompartment to produce pyruvate from formate and acetate. Proceedings of the National Academy of Sciences of the United States of America 119 (8), e2116871119 (2022)

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168.

Journal Article

Rocchetti, L.; Gioia, T.; Logozzo, G.; Brezeanu, C.; Pereira, L. G.; la Rosa; De, L.; Marzario, S.; Pieri, A.; Fernie, A. R. et al.; Alseekh, S.; Susek, K.; Cook, D. R.; Varshney, R. K.; Agrawal, S. K.; Hamwieh, A.; Bitocchi, E.; Papa, R.: Towards the Development, Maintenance and Standardized Phenotypic Characterization of Single-Seed-Descent Genetic Resources for Chickpea. Current Protocols 2 (2), e371 (2022)

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169.

Journal Article

Gao, Y.; Thiele, W.; Saleh, O.; Scossa, F.; Aarabi, F.; Zhang, H.; Sampathkumar, A.; Kühn, K.; Fernie, A. R.; Bock, R. et al.; Schöttler, M. A.; Zoschke, R.: Chloroplast translational regulation uncovers nonessential photosynthesis genes as key players in plant cold acclimation. Plant Cell 34 (5), pp. 2056 - 2079 (2022)

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170.

Journal Article

Guercio, A.; Torabi, S.; Cornu, D.; Dalmais, M.; Bendahmane, A.; Le Signor, C.; Pillot, J.; Le Bris, P.; Boyer, F.; Rameau, C. et al.; Gutjahr, C.; Germain, A.; Shabek, N.: Structural and functional analyses explain Pea KAI2 receptor diversity and reveal stereoselective catalysis during signal perception. COMMUNICATIONS BIOLOGY 5 (1), 126 (2022)

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171.

Journal Article

Ribeiro, C.; Stitt, M.; Hotta, C.: How Stress Affects Your Budget-Stress Impacts on Starch Metabolism. Frontiers in Plant Science 13, 774060 (2022)

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172.

Journal Article

Dong, S.; Tarkowska, D.; Sedaghatmehr, M.; Welsch, M.; Gupta, S.; Mueller-Roeber, B.; Balazadeh, S.: The HB40-JUB1 transcriptional regulatory network controls gibberellin homeostasis in Arabidopsis. Molecular Plant 15, pp. 322 - 339 (2022)

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173.

Journal Article

Fernie, A. R.; Zhang, Y.: The Bacillus subtilis glutamate anti-metabolon. Nature Metabolism 4 (2), pp. 161 - 162 (2022)

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174.

Journal Article

Yang, C.; Shen, S.; Zhou, S.; Li, Y.; Mao, Y.; Zhou, J.; Shi, Y.; An, L.; Zhou, Q.; Peng, W. et al.; Lyu, Y.; Liu, X.; Chen, W.; Wang, S.; Qu, L.; Liu, X.; Fernie, A. R.; Luo, J.: Rice metabolic regulatory network spanning its entire life cycle. Molecular Plant 15 (2), pp. 258 - 275 (2022)

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175.

Journal Article

Apelt, F.; Mavrothalassiti, E.; Gupta, S.; Machin, F.; Olas, J. J.; Annunziata, M. G.; Schindelasch, D.; Kragler, F.: Shoot and root single cell sequencing reveals tissue- and daytime-specific transcriptome profiles. Plant Physiology 188 (2), pp. 861 - 878 (2022)

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176.

Journal Article

Balazadeh, S.: A ‘hot’ cocktail: The multiple layers of thermomemory in plants. Current Opinion in Plant Biology 65, 102147 (2022)

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177.

Journal Article

Fernie, A. R.: Asserting dominance: the subgenome networks underlying Canola seed development. The Plant Journal 109 (3), pp. 475 - 476 (2022)

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178.

Journal Article

Lemaire-Chamley, M.; Koutouan, C.; Jorly, J.; Assali, J.; Yoshida, T.; Nogueira, M.; Tohge, T.; Ferrand, C.; Peres, L.; Asamizu, E. et al.; Ezura, H.; Fraser, P.; Hajirezaei, M.; Fernie, A. R.; Rothan, C.: A Chimeric TGA Repressor Slows Down Fruit Maturation and Ripening in Tomato. Plant and Cell Physiology 63 (1), pp. 120 - 134 (2022)

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179.

Journal Article

Wendering, P.; Nikoloski, Z.: Genome-Scale Modeling Specifies the Metabolic Capabilities of Rhizophagus irregularis. mSystems 7 (1), e01216-21 (2022)

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180.

Journal Article

Das, D.; Paries, M.; Hobecker, K.; Gigl, M.; Dawid, C.; Lam, H.; Zhang, J.; Chen, M.; Gutjahr, C.: PHOSPHATE STARVATION RESPONSE transcription factors enable arbuscular mycorrhiza symbiosis. Nature Communications 13 (1), 477 (2022)

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181.

Journal Article

Koschmieder, J.; Alseekh, S.; Shabani, M.; Baltenweck, R.; Maurino, V. G.; Palme, K.; Fernie, A. R.; Hugueney, P.; Welsch, R.: Color recycling: metabolization of apocarotenoid degradation products suggests carbon regeneration via primary metabolic pathways. Plant Cell Reports 41, pp. 961 - 977 (2022)

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182.

Journal Article

Boinot, M.; Karakas, E.; Koehl, K. I.; Pagter, M.; Zuther, E.: Cold stress and freezing tolerance negatively affect the fitness of Arabidopsis thaliana accessions under field and controlled conditions. Planta 255 (2), 39 (2022)

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183.

Journal Article

Thieme, S.; Walther, D.: Biclique extension as an effective approach to identify missing links in metabolic compound-protein interaction networks. Bioinformatics advances 2 (1), vbac001 (2022)

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184.

Journal Article

Mi, J.; Vallarino, J. G.; Petřík, I.; Novák, O.; Correa, S. M.; Kosmacz, M.; Havaux, M.; Rodriguez-Concepcion, M.; Al-Babili, S.; Fernie, A. R. et al.; Skirycz, A.; Moreno, J.C.: A manipulation of carotenoid metabolism influence biomass partitioning and fitness in tomato. Metabolic Engineering 70, pp. 166 - 180 (2022)

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185.

Journal Article

Simeoni, F.; Skirycz, A.; Simoni, L.; Castorina, G.; de Souza, L. P.; Fernie, A. R.; Alseekh, S.; Giavalisco, P.; Conti, L.; Tonelli, C. et al.; Galbiati, M.: The AtMYB60 transcription factor regulates stomatal opening by modulating oxylipin synthesis in guard cells. Scientific Reports 12 (1), 533 (2022)

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186.

Journal Article

Klein, H.; Gallagher, J.; Demesa-Arevalo, E.; Abraham-Juárez, M. J.; Heeney, M.; Feil, R.; Lunn, J. E.; Xiao, Y.; Chuck, G.; Whipple, C. et al.; Jackson, D.; Bartlett, M.: Recruitment of an ancient branching program to suppress carpel development in maize flowers. Proceedings of the National Academy of Sciences of the United States of America 119 (2), e2115871119 (2022)

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187.

Journal Article

Da Fonseca-Pereira, P.; Souza, P.V.L.; Fernie, A. R.; Timm, S.; Daloso, D.M.; Araújo, W.L.: Erratum: Thioredoxin-mediated regulation of (photo)respiration and central metabolism (Journal of Experimental Botany (2021) 72:17 (5987-6002) DOI: 10.1093/jxb/erab098). Journal of Experimental Botany 73 (5), 1653 (2022)

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188.

Journal Article

Fernie, A. R.; Alseekh, S.: Unravelling the molecular networks that regulate kiwifruit flavor. New Phytologist 233 (1), pp. 8 - 10 (2022)

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189.

Journal Article

Saint-Sorny, M.; Brzezowski, P.; Arrivault, S.; Alric, J.; Johnson, X.: Interactions Between Carbon Metabolism and Photosynthetic Electron Transport in a Chlamydomonas reinhardtii Mutant Without CO2 Fixation by RuBisCO. Frontiers in Plant Science 13, 876439 (2022)

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190.

Journal Article

Schlossarek, D.; Luzarowski, M.; Sokolowska, E.; Thirumalaikumar, V. P.; Dengler, L.; Willmitzer, L.; Ewald, J. C.; Skirycz, A.: Rewiring of the protein–protein–metabolite interactome during the diauxic shift in yeast. Cellular and Molecular Life Sciences 79 (11), 550 (2022)

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191.

Journal Article

Tian, Z.; Liu, F.; Li, D.; Fernie, A. R.; Chen, W.: Strategies for structure elucidation of small molecules based on LC–MS/MS data from complex biological samples. Computational and Structural Biotechnology Journal 20, pp. 5085 - 5097 (2022)

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192.

Journal Article

Villaecija-Aguilar, J.; Korosy, C.; Maisch, L.; Hamon-Josse, M.; Petrich, A.; Magosch, S.; Chapman, P.; Bennett, T.; Gutjahr, C.: KAI2 promotes Arabidopsis root hair elongation at low external phosphate by controlling local accumulation of AUX1 and PIN2. Current Biology 32 (1), pp. 228 - 236 (2022)

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193.

Journal Article

Wan, H.; Qiu, H.; Li, Z.; Zhang, X.; Zhang, J.; Jiang, D.; Fernie, A. R.; Lyu, Y.; Cheng, Y.; Wen, W.: Transcription factor CsESE3 positively modulates both jasmonic acid and wax biosynthesis in citrus. aBIOTECH 3, pp. 250 - 266 (2022)

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Book (1)

194.

Book

Yoshida, T. (Ed.): Abscisic Acid. (2022)

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Book Chapter (7)

195.

Book Chapter

Wen, W.; Jia, X.; Zhang, W.; Jiang, X.; Fernie, A. R.: Understanding carotenoid biosynthetic pathway control points using metabolomic analysis and natural genetic variation. In: Methods in Enzymology, Vol. 671, pp. 127 - 151 (2022)

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196.

Book Chapter

Zhu, F.; Fernie, A. R.; Scossa, F.: Preparation and Curation of Omics Data for Genome-Wide Association Studies. In: Methods in Molecular Biology, Vol. 2481 (Eds. Torkamabeh, D.; Belzile, F.). Humana, New York, NY (2022)

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197.

Book Chapter

Machin, F.; Hasbioğlu, Y.; Kragler, F.: An Arabidopsis Callus Grafting Method to Test Cell-to-Cell Mobility of Proteins. In: Plasmodesmata, Vol. 2457, pp. 299 - 312 (Eds. Benitez-Alfonso, Y.; Heinlein, M.) (2022)

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198.

Book Chapter

Borghi, M.; de Souza, L. P.; Fernie, A. R.: Measurement of Flower Metabolite Concentrations Using Gas Chromatography–Mass Spectrometry and High-Performance Liquid Chromatography–Mass Spectrometry. In: Methods in Molecular Biology, Vol. 2484 (Ed. Lambing, C.) (2022)

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199.

Book Chapter

Claassens, N. J.; Satanowski, A.; Bysani, V.R.; Dronsella, B.; Orsi, E.; Rainaldi, V.; Yilmaz, S.; Wenk, S.; Lindner, S. N.: Engineering the Reductive Glycine Pathway: A Promising Synthetic Metabolism Approach for C1-Assimilation. In: Advances in Biochemical Engineering/Biotechnology (Eds. Scheper, T.; Ulber, R.). Springer, Cham (2022)

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200.

Book Chapter

Martins, M.C.M.; Mafra, V.; Monte-Bello, C.C.; Caldana, C.: The Contribution of Metabolomics to Systems Biology: Current Applications Bridging Genotype and Phenotype in Plant Science. In: Advances in experimental medicine and biology, Vol. 1346, pp. 91 - 105 (Ed. Winck, F. W.) (2022)

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