Journal Article (183)

Journal Article
Serra, T. S.; Figueiredo, D.D.; Cordeiro, A. M.; Almeida, D. M.; Lourenço, T.; Abreu, I. A.; Sebastián, A.; Fernandes, L.; Contreras-Moreira, B.; Oliveira, M. M. et al.; Saibo, N. J. M.: OsRMC, a negative regulator of salt stress response in rice, is regulated by two AP2/ERF transcription factors. Plant Molecular Biology 82 (4), pp. 439 - 455 (2013)
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Shanmugabalaji, V.; Besagni, C.; Piller, L. E.; Douet, V.; Ruf, S.; Bock, R.; Kessler, F.: Dual targeting of a mature plastoglobulin/fibrillin fusion protein to chloroplast plastoglobules and thylakoids in transplastomic tobacco plants. Plant Molecular Biology 81 (1-2), pp. 13 - 25 (2013)
Journal Article
Sieh, D.; Watanabe, M.; Devers, E. A.; Brueckner, F.; Hoefgen, R.; Krajinski, F.: The arbuscular mycorrhizal symbiosis influences sulfur starvation responses of Medicago truncatula. New Phytologist 197 (2), pp. 606 - 616 (2013)
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Spielbauer, G.; Li, L.; Romisch-Margl, L.; Do, P. T.; Fouquet, R.; Fernie, A. R.; Eisenreich, W.; Gierl, A.; Settles, A. M.: Chloroplast-localized 6-phosphogluconate dehydrogenase is critical for maize endosperm starch accumulation. Journal of Experimental Botany 64 (8), pp. 2231 - 2242 (2013)
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Strehmel, N.; Kopka, J.; Scheel, D.; Böttcher, C.: Annotating unknown components from GC/EI-MS-based metabolite profiling experiments using GC/APCI(+)-QTOFMS. Metabolics 10 (2), pp. 324 - 336 (2013)
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Sulpice, R.; Nikoloski, Z.; Tschoep, H.; Antonio, C.; Kleeson, S.; Lahrlimi, A.; Selbig, J.; Hirofumi, I.; Gibon, Y.; Fernie, A. R. et al.; Stitt, M.: Impact of the carbon and nitrogen supply on relationships and connectivity between metabolism and biomass in a broad panel of Arabidopsis accessions. Plant Physiology 162 (1), pp. 347 - 363 (2013)
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Sweetlove, L. J.; Fernie, A. R.: The Spatial Organization of Metabolism Within the Plant Cell. Annual Review of Plant Biology 64, pp. 723 - 746 (2013)
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Szecowka, M.; Heise, R.; Tohge, T.; Nunes-Nesi, A.; Vosloh, D.; Huege, J.; Feil, R.; Lunn, J.; Nikoloski, Z.; Stitt, M. et al.; Fernie, A. R.; Arrivault, S.: Metabolic Fluxes in an Illuminated Arabidopsis Rosette. The Plant Cell 25 (2), pp. 694 - 714 (2013)
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Szymanski, W. G.; Kierszniowska, S.; Schulze, W. X.: Metabolic Labeling and Membrane Fractionation for Comparative Proteomic Analysis of Arabidopsis thaliana Suspension Cell Cultures. Journal of visualized experiments: JoVE (79) (2013)
Journal Article
Szymanski, W. G.; Kierszniowska, S.; Schulze, W. X.: Metabolic labeling and membrane fractionation for comparative proteomic analysis of Arabidopsis thaliana suspension cell cultures. Journal of visualized experiments: JoVE (79), e50535 (2013)
Journal Article
Tahir, J.; Watanabe, M.; Jing, H. C.; Hunter, D. A.; Tohge, T.; Nunes-Nesi, A.; Brotman, Y.; Fernie, A. R.; Hoefgen, R.; Dijkwel, P. P.: Activation of R-mediated innate immunity and disease susceptibility is affected by mutations in a cytosolic O-acetylserine (thiol) lyase in Arabidopsis. The Plant Journal 73 (1), pp. 118 - 130 (2013)
Journal Article
Timm, S.; Florian, A.; Wittmiss, M.; Jahnke, A.; Hagemann, M.; Fernie, A.; Bauwe, H.: Serine acts as metabolic signal for the transcriptional control of photorespiration-related genes in Arabidopsis thaliana. Plant Physiology 162 (1), pp. 379 - 389 (2013)
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Tisserant, E.; Malbreil, M.; Kuo, A.; Kohler, A.; Symeonidi, A.; Balestrini, R.; Charron, P.; Duensing, N.; Frey, N. F. D.; Gianinazzi-Pearson, V. et al.; Gilbert, L. B.; Handa, Y.; Herr, J. R.; Hijri, M.; Koul, R.; Kawaguchi, M.; Krajinski, F.; Lammers, P. J.; Masclauxm, F. G.; Murat, C.; Morin, E.; Ndikumana, S.; Pagni, M.; Petitpierre, D.; Requena, N.; Rosikiewicz, P.; Riley, R.; Saito, K.; Clemente, H. S.; Shapiro, H.; Van Tuinen, D.; Becard, G.; Bonfante, P.; Paszkowski, U.; Shachar-Hill, Y. Y.; Tuskan, G. A.; Young, P. W.; Sanders, I. R.; Henrissat, B.; Rensing, S. A.; Grigoriev, I. V.; Corradi, N.; Roux, C.; Martin, F.: Genome of an arbuscular mycorrhizal fungus provides insight into the oldest plant symbiosis. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 110 (50), pp. 20117 - 20122 (2013)
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Tohge, T.; Watanabe, M.; Hoefgen, R.; Fernie, A. R.: Shikimate and phenylalanine biosynthesis in the green lineage. Frontiers in Plant Science 4, p. 62 (2013)
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Tohge, T.; Watanabe, M.; Hoefgen, R.; Fernie, A. R.: The evolution of phenylpropanoid metabolism in the green lineage. Critical Reviews in Biochemistry and Molecular Biology 48 (2), pp. 123 - 152 (2013)
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Toubiana, D.; Fernie, A. R.; Nikoloski, Z.; Fait, A.: Network analysis: tackling complex data to study plant metabolism. Trends in Biotechnology 31 (1), pp. 29 - 36 (2013)
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van Houtte, H.; Vandesteene, L.; López-Galvis, L.; Lemmens, L.; Kissel, E.; Carpentier, S.; Feil, R.; Avonce, N.; Beeckman, T.; Lunn, J. E. et al.; van Dijck, P.: Over-expression of the trehalase gene AtTRE1 leads to increased drought stress tolerance in Arabidopsis and is involved in ABA-induced stomatal closure. Plant Physiology 161 (3), pp. 1158 - 1171 (2013)
Journal Article
Wahl, V.; Ponnu, J.; Schlereth, A.; Arrivault, S.; Langenecker, T.; Franke, A.; Feil, R.; Lunn, J.; Stitt, M.; Schmid, M.: Regulation of Flowering by Trehalose-6-Phosphate Signaling in Arabidopsis thaliana. Science 339 (6120), pp. 704 - 707 (2013)
Journal Article
Walentowski, H.; Schulze, E. D.; Teodosiu, M.; Bouriaud, O.; von Hessberg, A.; Bussler, H.; Baldauf, L.; Schulze, I.; Waeldchen, J.; Boecker, R. et al.; Herzog, S.; Schulze, W. X.: Sustainable forest management of Natura 2000 sites: a case study from a private forest in the Romanian Southern Carpathians. ANNALS OF FOREST RESEARCH 56 (1), pp. 217 - 245 (2013)
Journal Article
Watanabe, M.; Balazadeh, S.; Tohge, T.; Erban, A.; Giavalisco, P.; Kopka, J.; Mueller-Roeber, B.; Fernie, A. R.; Hoefgen, R.: Comprehensive dissection of spatio-temporal metabolic shifts in primary, secondary and lipid metabolism during developmental senescence in Arabidopsis thaliana. Plant Physiology 162 (3), pp. 1290 - 1310 (2013)
Journal Article
Winck, F. V.; Arvidsson, S.; Mauricio Riano-Pachon, D.; Hempel, S.; Koseska, A.; Nikoloski, Z.; Urbina Gomez, D. A.; Rupprecht, J.; Mueller-Roeber, B.: Genome-Wide Identification of Regulatory Elements and Reconstruction of Gene Regulatory Networks of the Green Alga Chlamydomonas reinhardtii under Carbon Deprivation. PLoS One 8 (11), e79909 (2013)
Journal Article
Wittenburg, D.; Melzer, N.; Willmitzer, L.; Lisec, J.; Kesting, U.; Reinsch, N.; Repsilber, D.: Milk metabolites and their genetic variability. Journal of Dairy Science 96 (4), pp. 2557 - 2569 (2013)
Journal Article
Wu, X. N.; Sanchez-Rodriguez, C.; Pertl-Obermeyer, H.; Obermeyer, G.; Schulze, W. X.: Sucrose-induced receptor kinase SIRK1 regulates a plasma membrane aquaporin in Arabidopsis. Molecular and Cellular Proteomics 12 (10), pp. 2856 - 2873 (2013)
Journal Article
Xue, W.; Batushansky, A.; Toubiana, D.; Botnick, I.; Szymanski, J.; Khozin-Goldberg, I.; Nikoloski, Z.; Lewinsohn, E.; Fait, A.: The Investment in Scent: Time-Resolved Metabolic Processes in Developing Volatile-Producing Nigella sativa L. Seeds. PLoS One 8 (9), e73061 (2013)
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Zakharova, A.; Nikoloski, Z.; Koseska, A.: Dimensionality reduction of multistable biological systems. Bulletin of Mathematical Biology 75 (3), pp. 373 - 392 (2013)
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Zauber, H.; Schuler, V.; Schulze, W.: Systematic evaluation of reference protein normalization in proteomic experiments. Frontiers in plant science 4, p. 25 (2013)
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Zauber, H.; Schüler, V.; Schulze, W. X.: Systematic evaluation of reference protein normalization in proteomic experiments. Frontiers in plant science 4, p. 25 (2013)
Journal Article
Zauber, H.; Szymanski, W. G.; Schulze, W. X.: Unraveling Sterol-dependent Membrane Phenotypes by Analysis of Protein Abundance-ratio Distributions in Different Membrane Fractions Under Biochemical and Endogenous Sterol Depletion. Molecular & cellular proteomics: MCP 12 (12), pp. 3732 - 3743 (2013)
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Zhang, Y.; Persson, S.; Giavalisco, P.: Differential Regulation of Carbon Partitioning by the Central Growth Regulator Target of Rapamycin (TOR). Molecular Plant 6 (6), pp. 1731 - 1733 (2013)
Journal Article
Zhou, W.; Karcher, D.; Bock, R.: Importance of adenosine-to-inosine editing adjacent to the anticodon in an Arabidopsis alanine tRNA under environmental stress. Nucleic Acids Research 41 (5), pp. 3362 - 3372 (2013)
Journal Article
Zoschke, R.; Qu, Y.; Zubo, Y. O.; Boerner, T.; Schmitz-Linneweber, C.: Mutation of the pentatricopeptide repeat-SMR protein SVR7 impairs accumulation and translation of chloroplast ATP synthase subunits in Arabidopsis thaliana. Journal of Plant Research 126 (3), pp. 403 - 414 (2013)
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Zoschke, R.; Watkins, K. P.; Barkan, A.: A Rapid Ribosome Profiling Method Elucidates Chloroplast Ribosome Behavior in Vivo. The Plant Cell 25 (6), pp. 2265 - 2275 (2013)
Journal Article
Zulawski, M.; Braginets, R.; Schulze, W. X.: PhosPhAt goes kinases--searchable protein kinase target information in the plant phosphorylation site database PhosPhAt. Nucleic Acids Research 41 (D1), pp. D1176 - D1184 (2013)

Book Chapter (5)

Book Chapter
Bock, R.: Engineering plastid transgenes for high level protein expression. In: Chloroplast Biotechnology: Methods and Protocols, p. In press (2013)
Book Chapter
Brotman, Y.: The use of metabolomic approaches to study Trichoderma-plant interactions. In: Trichoderma: biology and applications., pp. 209 - 221. CABI, Wallingford (2013)
Book Chapter
Groth, D.; Hartmann, S.; Klie, S.; Selbig, J.: Principal components analysis. In: Methods in Molecular Biology, Vol. 930, pp. 527 - 547 (2013)
Book Chapter
Thalhammer, A.; Hincha, D. K.: The Function and Evolution of Closely Related COR/LEA (Cold-Regulated/Late Embryogenesis Abundant) Proteins in Arabidopsis thaliana. In: Plant and Microbe Adaptations to Cold in a Changing World, pp. 89 - 105 (Ed. Imai, R.). Springer, New York (2013)
Book Chapter
Walther, D.: The combinatorics of cis-regulatory elements: from cooperatively acting motifs to gene regulatory networks. In: The analysis of cis-elements: Current developments, knowledge and applications to gene networking, pp. 176 - 188 (Eds. Berendzen, K.; Wanke, D.). Bentham Books, AG Bussum (2013)

Proceedings (1)

Subcellular alterations in leaves upon down-regulation on PRORP1 in Arabidopsis. (2013)

Conference Paper (2)

Conference Paper
Lu, Y.; Rijzaani, H.; Karcher, D.; Ruf, S.; Bock, R.: Efficient metabolic pathway engineering in transgenic tobacco and tomato plastids with synthetic multigene operons. In: Proceedings of the National Academy of Sciences of the United States of America, pp. E623 - E632. Proceedings of the National Academy of Sciences of the United States of America. (2013)
Conference Paper
Pick, T. R.; Brautigam, A.; Schulz, M. A.; Obata, T.; Fernie, A. R.; Weber, A. P.: PLGG1, a plastidic glycolate glycerate transporter, is required for photorespiration and defines a unique class of metabolite transporters. Proceedings of the National Academy of Sciences of the United States of America 110, pp. 3185 - 3190 (2013)

Poster (1)

Dai, Z. W.; Léona, C.; Feil, R.; Lunn, J. E.; Delrot, S.; Gomès, E.: Developmental regulation of primary carbohydrate metabolism in grape berry (Vitis vinifera L.) cv. Cabernet Sauvignon. (2013)

Working Paper (1)

Working Paper
Scialdone, A.; Mugford, S. T.; Feike, D.; Skeffington, A.; Borrill, P.; Graf, A.; Smith, A. M.; Howard, M.: Arabidopsis plants perform arithmetic division to prevent starvation at night. (2013)

Journal (1)

Dual Resistance of Melon to Fusarium oxysporum Races 0 and 2 and to Papaya ring-spot virus is Controlled by a Pair of Head-to-Head-Oriented NB-LRR Genes of Unusual Architecture.

Patent (1)

Bar-Even, A.; Milo, R.; Noor, E.; Yishai, O.: Use of the reductive glycine pathway for generating formatotrophic and autotrophic microorganisms. (2013)

Review Article (2)

Review Article
Gutjahr, C.; Parniske, M.: Cell and Developmental Biology of Arbuscular Mycorrhiza Symbiosis. (2013)
Review Article
Gutjahr, C.; Paszkowski, U.: Multiple control levels of root system remodeling in arbuscular mycorrhizal symbiosis. (2013)
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