Journal Article (196)

101.
Journal Article
Zhao, L.; Wang, H.-J.; Martins, P. D.; van Dongen; T., J.; Bolger, A. M.; Schmidt, R. R.; Jing, H.-C.; Mueller-Roeber, B.; Schippers, J. H. M.: The Arabidopsis thaliana onset of leaf death 12 mutation in the lectin receptor kinase P2K2 results in an autoimmune phenotype. BMC Plant Biology 23 (1), 294 (2023)
102.
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Aarabi, F.; Salem, M. A.; Arrivault, S.; Bulut, M.; Schöttler, M. A.; Giavalisco, P.; Fernie, A. R.; Hoefgen, R.: The regulation of sulfolipids under sulfur starvation. Plant Molecular Biology 112, pp. 195 - 198 (2023)
103.
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Alseekh, S.; Fernie, A. R.: Expanding our coverage: Strategies to detect a greater range of metabolites. Current Opinion in Plant Biology 73, 102335 (2023)
104.
Journal Article
Apodiakou, A.; Hoefgen, R.: New insights into the regulation of plant metabolism by O-acetyl-serine: sulfate and beyond. Journal of Experimental Botany 74 (11), pp. 3361 - 3378 (2023)
105.
Journal Article
Cerqueira, J. V. A.; de Andrade; T., M.; Rafael, D. D.; Zhu, F.; Martins, S. V. C.; Nunes-Nesi, A.; Benedito, V.; Fernie, A. R.; Zsögön, A.: Anthocyanins and reactive oxygen species: a team of rivals regulating plant development? Plant Molecular Biology 112, pp. 213 - 223 (2023)
106.
Journal Article
Geng, R.; Pang, X.; Li, X.; Shi, S.; Hedtke, B.; Grimm, B.; Bock, R.; Huang, J.; Zhou, W.: PROGRAMMED CELL DEATH8 interacts with tetrapyrrole biosynthesis enzymes and ClpC1 to maintain homeostasis of tetrapyrrole metabolites in Arabidopsis. New Phytologist 238 (6), pp. 2545 - 2560 (2023)
107.
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Julca, I.; Mutwil-Anderwald, D.; Manoj, V.; Khan, Z.; Lai, S. K.; Yang, L. K.; Beh, I. T.; Dziekan, J.; Lim, Y. P.; Lim, S. K. et al.; Low, Y. W.; Lam, Y. I.; Tjia, S.; Mu, Y.; Tan, Q. W.; Nuc, P.; Choo, L. M.; Khew, G.; Shining, L.; Kam, A.; Tam, J. P.; Bozdech, Z.; Schmidt, M.; Usadel, B.; Kanagasundaram, Y.; Alseekh, S.; Fernie, A. R.; Li, H. Y.; Mutwil, M.: Genomic, transcriptomic, and metabolomic analysis of Oldenlandia corymbosa reveals the biosynthesis and mode of action of anti-cancer metabolites. Journal of Integrative Plant Biology 65 (6), pp. 1442 - 1466 (2023)
108.
Journal Article
Luzarowska, U.; Ruß, A.-K.; Joubès, J.; Batsale, M.; Szymański, J.; Thirumalaikumar, V. P.; Luzarowski, M.; Wu, S.; Zhu, F.; Endres, N. et al.; Khedhayir, S.; Schumacher, J.; Jasinska, W.; Xu, K.; Cordoba, S. M. C.; Weil, S.; Skirycz, A.; Fernie, A. R.; Li-Beisson, Y.; Fusari, C. M.; Brotman, Y.: Hello darkness, my old friend: 3-KETOACYL-COENZYME A SYNTHASE4 is a branch point in the regulation of triacylglycerol synthesis in Arabidopsis thaliana. The Plant Cell 35 (6), pp. 1984 - 2005 (2023)
109.
Journal Article
Skeffington, A. W.; Fischer, A.; Sviben, S.; Brzezinka , M.; Gorka, M.; Bertinetti, L.; Woehle, C.; Huettel, B.; Graf, A.; Scheffel, A.: A joint proteomic and genomic investigation provides insights into the mechanism of calcification in coccolithophores. Nature Communications 14, 3749 (2023)
110.
Journal Article
Smirnova, J.; Loerke, J.; Kleinau, G.; Schmidt, A.; Bürger, J.; Meyer, E. H.; Mielke, T.; Scheerer, P.; Bock, R.; Spahn, C. M. T. et al.; Zoschke, R.: Structure of the actively translating plant 80S ribosome at 2.2 Å resolution. Nature Plants 9, pp. 987 - 1000 (2023)
111.
Journal Article
Soltani, F.; Nouri, M.; Shokrpour, M.; Alabboud, M.; Erban, A.; Fehrle, I.; Kopka, J.: Breeding of Persian melon: Purpose to increase volatile compounds in melon (Cucumis melo) intergroup F1 cross population. Plant Breeding 142 (3), pp. 372 - 387 (2023)
112.
Journal Article
Souza, P. V. L.; Hou, L.-Y.; Sun, H.; Poeker, L.; Lehman, M.; Bahadar, H.; Domingues-Junior, A. P.; Dard, A.; Bariat, L.; Reichheld, J.-P. et al.; Silveira, J. A. G.; Fernie, A. R.; Timm, S.; Geigenberger, P.; Daloso, D. M.: Plant NADPH-dependent thioredoxin reductases are crucial for the metabolism of sink leaves and plant acclimation to elevated CO2. Plant, Cell and Environment 46, pp. 2337 - 2357 (2023)
113.
Journal Article
Valifard, M.; Fernie, A. R.; Kitashova, A.; Nägele, T.; Schröder, R.; Meinert, M.; Pommerrenig, B.; Mehner-Breitfeld, D.; Witte, C.-P.; Brüser, T. et al.; Keller, I.; Neuhaus, H. E.: The novel chloroplast glucose transporter pGlcT2 affects adaptation to extended light periods. The Journal of Biological Chemistry 299 (6), 104741 (2023)
114.
Journal Article
Yokoyama, R.: EngineeRING the gear of ATP synthase: a way to address complexity and flexibility of photosynthesis. Plant Physiology 192 (2), pp. 691 - 693 (2023)
115.
Journal Article
Zhang, Q.; Shi, Y.; Hu, H.; Shi, Y.; Tang, D.; Ruan, J.; Fernie, A. R.; Liu, M.-Y.: Magnesium promotes tea plant growth via enhanced glutamine synthetase-mediated nitrogen assimilation. Plant Physiology 192 (2), pp. 1321 - 1337 (2023)
116.
Journal Article
Gulyas, Z.; Székely, A.; Kulman, K.; Kocsy, G.: Light-Dependent Regulatory Interactions between the Redox System and miRNAs and Their Biochemical and Physiological Effects in Plants. International Journal of Molecular Sciences 24 (9), 8323 (2023)
117.
Journal Article
Avidan, O.; Moraes, T. A.; Mengin, V.; Feil, R.; Rolland, F.; Stitt, M.; Lunn, J. E.: In vivo protein kinase activity of SnRK1 fluctuates in Arabidopsis rosettes during light-dark cycles. Plant Physiology 192, pp. 387 - 408 (2023)
118.
Journal Article
Durand, M.; Brehaut, V.; Clement, G.; Kelemen, Z.; Macé, J.; Feil, R.; Duville, G.; Launay-Avon, A.; Paysant-Le Roux, C.; Lunn, J. E. et al.; Roudier, F.; Krapp, A.: The Arabidopsis transcription factor NLP2 regulates early nitrate responses and integrates nitrate assimilation with energy and carbon skeleton supply. The Plant Cell (5), pp. 1429 - 1454 (2023)
119.
Journal Article
Jia, Z.-C.; Das, D.; Zhang, Y.; Fernie, A. R.; Liu, Y.-G.; Chen, M.; Zhang, J.: Plant serine/arginine-rich proteins: versatile players in RNA processing. Planta 257 (6), 109 (2023)
120.
Journal Article
Koehl, K. I.; Mulugeta Aneley, G.; Haas, M.: Finding Phenotypic Biomarkers for Drought Tolerance in Solanum tuberosum. Agronomy 13, 1457 (2023)
121.
Journal Article
López, C. M.; Alseekh, S.; Torralbo, F.; Martinez Rivas, F.J.; Fernie, A. R.; Amil-Ruiz, F.; Alamillo, J. M.: Transcriptomic and metabolomic analysis reveals that symbiotic nitrogen fixation enhances drought resistance in common bean. Journal of Experimental Botany 74 (10), pp. 3203 - 3219 (2023)
122.
Journal Article
Martinez Rivas, F.J.; Blanco-Portales, R.; Pérez-Serratosa, M.; Ric-Varas, P.; Sánchez, V. G.; Puche, L. M.; Moyano, L.; Mercado, J. Á.; Alseekh, S.; Caballero, J. L. et al.; Fernie, A. R.; Muñoz-Blanco, J.; Molina-Hidalgo, F. J.: FaMYB123 interacts with FabHLH3 to regulate the late steps of anthocyanin and flavonol accumulation during ripening. The Plant Journal 114 (3), pp. 683 - 698 (2023)
123.
Journal Article
Moghe, G.; Kruse, L. H.; Petersen, M.; Scossa, F.; Fernie, A. R.; Gaquerel, E.; D'Auria, J. C.: BAHD Company: The Ever-Expanding Roles of the BAHD Acyltransferase Gene Family in Plants. Annual Review of Plant Biology 74, pp. 165 - 194 (2023)
124.
Journal Article
Stitz, M.; Kuster, D.; Reinert, M.; Schepetilnikov, M.; Berthet, B.; Reyes-Hernández, J.; Janocha, D.; Artins, A.; Boix, M.; Henriques, R. et al.; Pfeiffer, A.; Lohmann, J.; Gaquerel, E.; Maizel, A.: TOR acts as a metabolic gatekeeper for auxin-dependent lateral root initiation in Arabidopsis thaliana. EMBO Journal 42 (10), e111273 (2023)
125.
Journal Article
Wijesingha Ahchige, M.; Fernie, A. R.; Alseekh, S.: PANTOTHENATE KINASE4, LOSS OF GDU2, and TRANSPOSON PROTEIN1 affect the canalization of tomato fruit metabolism. Plant Physiology 192 (1), pp. 442 - 468 (2023)
126.
Journal Article
Zhan, C.; Lei, L.; Guo, H.; Zhou, S.; Xu, C.; Liu, Z.; Wu, Z.; Deng, Y.; Miao, Y.; Han, Y. et al.; Zhang, M.; Li, H.; Huang, S.; Yang, C.; Zhang, F.; Li, Y.; Liu, L.; Liu, X.; Abbas, H.M.K.; Fernie, A. R.; Yuan, M.; Luo, J.: Disease resistance conferred by components of essential chrysanthemum oil and the epigenetic regulation of OsTPS1. Science China Life Sciences 66, pp. 1108 - 1118 (2023)
127.
Journal Article
Zhang, Y.; Chen, M.; Liu, T.; Qin, K.; Fernie, A. R.: Investigating the dynamics of protein-protein interactions in plants. The Plant Journal 114 (4), pp. 965 - 983 (2023)
128.
Journal Article
Neri-Silva, R.; Monteiro-Batista, R. D.; Fonseca-Pereira, P. D.; Nunes, M. D.; Viana-Silva, A. L.; Palhares Ribeiro, T.; Pérez-Díaz, J. L.; Medeiros, D.B.; Araújo, W. L.; Fernie, A. R. et al.; Nunes-Nesi, A.: On the Significance of the ADNT1 Carrier in Arabidopsis thaliana under Waterlogging Conditions. Biomolecules 13 (5), 731 (2023)
129.
Journal Article
Bulut, M.; Alseekh, S.; Fernie, A. R.: Natural variation of respiration-related traits in plants. Plant Physiology 191 (4), pp. 2120 - 2132 (2023)
130.
Journal Article
Chen, Y.; Wang, Y.; Liang, X.; Zhang, Y.; Fernie, A. R.: Mass spectrometric exploration of phytohormone profiles and signaling networks. Trends in Plant Science 28 (4), pp. 399 - 414 (2023)
131.
Journal Article
Gago, J.; Nadal, M.; Clemente-Moreno, M. J.; Figueroa, C. M.; Medeiros, D.B.; Cubo-Ribas, N.; Cavieres, L. A.; Gulías, J.; Fernie, A. R.; Flexas, J. et al.; Bravo, L. A.: Nutrient availability regulates Deschampsia antarctica photosynthetic and stress tolerance performance in Antarctica. Journal of Experimental Botany 74, pp. 2620 - 2637 (2023)
132.
Journal Article
Ghandour, R.; Gao, Y.; Laskowski, J.; Barahimipour, R.; Ruf, S.; Bock, R.; Zoschke, R.: Transgene insertion into the plastid genome alters expression of adjacent native chloroplast genes at the transcriptional and translational levels. Plant Biotechnology Journal 21 (4), pp. 711 - 725 (2023)
133.
Journal Article
Hong, J.; Rosental, L.; Xu, Y.; Xu, D.; Orf, I.; Wang, W.; Hu, Z.; Su, S.; Bai, S.; Ashraf, M. et al.; Hu, C.; Zhang, C.; Li, Z.; Xu, J.; Liu, Q.; Zhang, H.; Zhang, F.; Luo, Z.; Chen, M.; Chen, X.; Betts, N.; Fernie, A. R.; Liang, W.; Chen, G.; Brotman, Y.; Zhang, D.; Shi, J.: Genetic architecture of seed glycerolipids in Asian cultivated rice. Plant, Cell and Environment 46 (4 - Special Issue: Rice 2050), pp. 1278 - 1294 (2023)
134.
Journal Article
Lohmann, J.; de Luxán-Hernández, C.; Gao, Y.; Zoschke, R.; Weingartner, M.: Arabidopsis Translation factor eEF1Bγ impacts plant development and associates with heat-induced cytoplasmic foci. Journal of Experimental Botany 74 (8), pp. 2585 - 2602 (2023)
135.
Journal Article
Machens, F.; Ran, G.; Ruehmkorff, C.; Meyer auf der Heyde, J.; Mueller-Roeber, B.; Hochrein, L.: PhiReX 2.0: A Programmable and Red Light-Regulated CRISPR-dCas9 System for the Activation of Endogenous Genes in Saccharomyces cerevisiae. ACS Synthetic Biology 12 (4), pp. 1046 - 1057 (2023)
136.
Journal Article
Röhricht, H.; Przybyla-Toscano, J.; Forner, J.; Boussardon, C.; Keech, O.; Rouhier, N.; Meyer, E. H.: Mitochondrial ferredoxin-like is essential for forming complex I-containing supercomplexes in Arabidopsis. Plant Physiology 191 (4), pp. 2170 - 2184 (2023)
137.
Journal Article
Wendering, P.; Nikoloski, Z.: Toward mechanistic modeling and rational engineering of plant respiration. Plant Physiology 191 (4), pp. 2150 - 2166 (2023)
138.
Journal Article
Mutwil, M.; Fernie, A. R.: Ancestral Genome Reconstruction for Studies of the Green Lineage. Molecular Plant 16 (4), pp. 657 - 659 (2023)
139.
Journal Article
Aghajanzadeh, T.A.; Watanabe, M.; Tohge, T.; Hawkesford, M.J.; Fernie, A. R.; Hoefgen, R.; Elzenga, J.T.M.; De Kok, L.J.: Necrotrophic fungal infection affects indolic glucosinolate metabolism in Brassica rapa. Acta Physiologiae Plantarum 45 (5), 64 (2023)
140.
Journal Article
Aharoni, A.; Goodacre, R.; Fernie, A. R.: Plant and microbial sciences as key drivers in the development of metabolomics research. Proceedings of the National Academy of Sciences of the United States of America 120 (12), e2217383120 (2023)
141.
Journal Article
Bruinsma, L.; Wenk, S.; Claassens, N.J.; Martins dos Santos, V.A.P.: Paving the way for synthetic C1. Metabolic Engineering 76, pp. 215 - 224 (2023)
142.
Journal Article
Campana, P.; Nikoloski, Z.: Self- and cross-attention accurately predicts metabolite–protein interactions. NAR: genomics and bioinformatics 5 (1), lqad008 (2023)
143.
Journal Article
Chen, J.; Zhang, Y.; Yin, H.; Liu, W.; Hu, X.; Li, D.; Lan, C.; Gao, L.; He, Z.; Cui, F. et al.; Fernie, A. R.; Chen, W.: The pathway of melatonin biosynthesis in common wheat (Triticum aestivum). Journal of Pineal Research 74 (2), e12841 (2023)
144.
Journal Article
Fan, R.; Zhu, C.; Qiu, D.; Mao, G.; Mueller-Roeber, B.; Zeng, J.: Integrated transcriptomic and metabolomic analyses reveal key genes controlling flavonoid biosynthesis in Citrus grandis ‘Tomentosa’ fruits. Plant Physiology and Biochemistry 196, pp. 210 - 221 (2023)
145.
Journal Article
Guo, H.; Cao, P.; Wang, C.; Lai, J.; Deng, Y.; Li, C.; Hao, Y.; Wu, Z.; Chen, R.; Qiang, Q. et al.; Fernie, A. R.; Yang, J.; Wang, S.: Population analysis reveals the roles of DNA methylation in tomato domestication and metabolic diversity. Science China Life Sciences 66, pp. 1888 - 1902 (2023)
146.
Journal Article
Martínez-Peña, R.; Vergara-Díaz, O.; Schlereth, A.; Höhne, M.; Morcuende, R.; Nieto-Taladriz, M.T.; Araus, J.L.; Aparicio, N.; Vicente, R.: Analysis of durum wheat photosynthetic organs during grain filling reveals the ear as a water stress-tolerant organ and the peduncle as the largest pool of primary metabolites. Planta 257 (4), 81 (2023)
147.
Journal Article
Novaković, L.; Yakubov, G.E.; Ma, Y.; Bacic, A.; Blank, K.G.; Sampathkumar, A.; Johnson, K.L.: DEFECTIVE KERNEL1 regulates cellulose synthesis and affects primary cell wall mechanics. Frontiers in Plant Science 14, 1150202 (2023)
148.
Journal Article
Schada von Borzyskowski, L.; Schulz-Mirbach, H.; Troncoso Castellanos, M.; Severi, F.; Gomez Coronado, P. A.; Paczia, N.; Glatter, T.; Bar-Even, A.; Lindner, S. N.; Erb, T.J.: Implementation of the β-hydroxyaspartate cycle increases growth performance of Pseudomonas putida on the PET monomer ethylene glycol. Metabolic Engineering 76, pp. 97 - 109 (2023)
149.
Journal Article
Sheng, O.; Yin, Z.; Huang, W.; Chen, M.; Du, M.; Kong, Q.; Fernie, A. R.; Yi, G.; Yan, S.: Metabolic profiling reveals genotype-associated alterations in carotenoid content during banana postharvest ripening. Food Chemistry 403, 134380 (2023)
150.
Journal Article
Strand, D.; Karcher, D.; Ruf, S.; Schadach, A.; Schöttler, M. A.; Sandoval-Ibanez, O.; Hall, D.; Kramer, D. M.; Bock, R.: Characterization of mutants deficient in N-terminal phosphorylation of the chloroplast ATP synthase subunit β. Plant Physiology 191 (3), pp. 1818 - 1835 (2023)
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