Publications of the MPI

101.

Journal Article

Korkuc, P.; Walther, D.: The Identification of Cis-Regulatory Sequence Motifs in Gene Promoters Based on SNP Information. PLANT SYNTHETIC PROMOTERS: METHODS AND PROTOCOLS, pp. 31 - 47 (2016)

MPG.PuRe

DOI

102.

Journal Article

Lee, Y. P.; Funk, C.; Erban, A.; Kopka, J.; Koehl, K. I.; Zuther, E.; Hincha, D. K.: Salt stress responses in a geographically diverse collection of Eutrema/Thellungiella spp. accessions. Functional Plant Biology 43, pp. 590 - 606 (2016)

MPG.PuRe

DOI

103.

Journal Article

Li, L.; Kubiszewski-Jakubiak, S.; Radomiljac, J.; Wang, Y.; Law, S. R.; Keech, O.; Narsai, R.; Berkowitz, O.; Duncan, O.; Murcha, M. W. et al.; Whelan, J.: Characterization of a novel beta-barrel protein (AtOM47) from the mitochondrial outer membrane of Arabidopsis thaliana. Journal of Experimental Botany 67 (21), pp. 6061 - 6075 (2016)

MPG.PuRe

DOI

104.

Journal Article

Lis, M.; Walther, D.: The orientation of transcription factor binding site motifs in gene promoter regions: does it matter? BMC Genomics 17, 185 (2016)

MPG.PuRe

DOI

105.

Journal Article

Liu, Z.; Alseekh, S.; Brotman, Y.; Zheng, Y.; Fei, Z.; Tieman, D.; Giovannoni, J.; Fernie, A. R.; Klee, H.: Identification of a Solanum pennellii Chromosome 4 Fruit Flavor and Nutritional Quality-Associated Metabolite QTL. Frontiers in Plant Science 7, 1671 (2016)

MPG.PuRe

DOI

106.

Journal Article

Liu, Z.; Omranian, N.; Neumetzler, L.; Wang, T.; Herter, T.; Usadel, B.; Demura, T.; Giavalisco, P.; Nikoloski, Z.; Persson, S.: A transcriptional and metabolic framework for secondary wall formation in arabidopsis. Plant Physiology 172 (2), pp. 1334 - 1351 (2016)

MPG.PuRe

DOI

Full

107.

Journal Article

Liu, Z.; Tavares, R.; Forsythe, E. S.; André, F.; Lugan, R.; Jonasson, G.; Boutet-Mercey, S.; Tohge, T.; Beilstein, M. A.; Werck-Reichhart, D. et al.; Renault, H.: Evolutionary interplay between sister cytochrome P450 genes shapes plasticity in plant metabolism. Nature Communications (7), 13026 (2016)

MPG.PuRe

DOI

108.

Journal Article

Lortzing, T.; Calf, O. W.; Boehlke, M.; Schwachtje, J.; Kopka, J.; Geuss, D.; Kosanke, S.; van Dam, N. M.; Steppuhn, A.: Extrafloral nectar secretion from wounds of Solanum dulcamara. Nature Plants 2 (5), 16056 (2016)

MPG.PuRe

DOI

109.

Journal Article

Lu, Y.; Yasuda, S.; Li, X.; Fukao, Y.; Tohge, T.; Fernie, A. R.; Matsukura, C.; Ezura, H.; Sato, T.; Yamaguchi, J.: Characterization of ubiquitin ligase SlATL31 and proteomic analysis of 14-3-3 targets in tomato fruit tissue (Solanum lycopersicum L.). Journal of Proteomics 143, pp. 254 - 264 (2016)

MPG.PuRe

DOI

110.

Journal Article

Machado, M.; Bromke, M. A.; Domingues Júnior, A.P.; Marçal Vieira Vaz, M.G.; Rosa, R.M.; Vinson, C.C.; Sabir, J.S.; Rocha, D.I.; Martins, M.A.; Araújo, W.L. et al.; Willmitzer, L.; Szymanski, J.; Nunes-Nesi, A.: Comprehensive metabolic reprograming in freshwater Nitzschia palea strains undergoing nitrogen starvation is likely associated with its ecological origin. Algal Research 18, pp. 116 - 126 (2016)

MPG.PuRe

DOI

111.

Journal Article

Mahrez, W.; Arellano, M. S. T.; Moreno-Romero, J.; Nakamura, M.; Shu, H.; Nanni, P.; Köhler, C.; Gruissem, W.; Hennig, L.: H3K36ac Is an Evolutionary Conserved Plant Histone Modification That Marks Active Genes. Plant Physiology 170 (3), pp. 1566 - 1577 (2016)

MPG.PuRe

DOI

112.

Journal Article

Mahrez, W.; Shin, J.; Munoz-Viana, R.; Figueiredo, D.D.; Trejo-Arellano, M. S.; Exner, V.; Siretskiy, A.; Gruissem, W.; Köhler, C.; Hennig, L.: BRR2a Affects Flowering Time via FLC Splicing. PLoS Genetics 12 (4), e1005924 (2016)

MPG.PuRe

DOI

113.

Journal Article

Martin, A. P.; Palmer, W. M.; Brown, C.; Abel, C.; Lunn, J. E.; Furbank, R. T.; Grof, C. P. L.: A developing Setaria viridis internode: an experimental system for the study of biomass generation in a C-4 model species. Biotechnology for Biofuels 9, 45 (2016)

MPG.PuRe

DOI

114.

Journal Article

Martinez, G.; Panda, K.; Köhler, C.; Slotkin, R. K.: Silencing in sperm cells is directed by RNA movement from the surrounding nurse cell. Nature Plants 2 (4), 16030 (2016)

MPG.PuRe

DOI

115.

Journal Article

Medeiros, D. B.; Martins, S. C. V.; Cavalcanti, J. H. F.; Daloso, D. M.; Martinoia, E.; Nunes-Nesi, A.; DaMatta, F. M.; Fernie, A. R.; Araujo, W. L.: Enhanced Photosynthesis and Growth in atquac1 Knockout Mutants Are Due to Altered Organic Acid Accumulation and an Increase in Both Stomatal and Mesophyll Conductance. Plant Physiology 170 (1), pp. 86 - 101 (2016)

MPG.PuRe

DOI

116.

Journal Article

Montero, R.; Luisa Perez-Bueno, M.; Baron, M.; Florez-Sarasa, I. D.; Tohge, T.; Fernie, A. R.; El Aou Ouad, H.; Flexas, J.; Bota, J.: Alterations in primary and secondary metabolism in Vitis vinifera "Malvasia de Banyalbufar' upon infection withGrapevine leafroll-associated virus 3. Physiologia Plantarum 157 (4), pp. 442 - 452 (2016)

MPG.PuRe

DOI

117.

Journal Article

Monti, L. L.; Bustamante, C. A.; Osorio, S.; Gabilondo, J.; Borsani, J.; Lauxmann, M. A.; Maulion, E.; Valentini, G.; Budde, C. O.; Fernie, A. R. et al.; Lara, M. V.; Drincovich, M. F.: Metabolic profiling of a range of peach fruit varieties reveals high metabolic diversity and commonalities and differences during ripening. Food Chemistry 190, pp. 879 - 888 (2016)

MPG.PuRe

DOI

118.

Journal Article

Moreno, J.C.; Cerda, A.; Simpson, K.; Lopez-Diaz, I.; Carrera, E.; Handford, M.; Stange, C.: Increased Nicotiana tabacum fitness through positive regulation of carotenoid, gibberellin and chlorophyll pathways promoted by Daucus carota lycopene beta-cyclase (Dclcyb1) expression. Journal of Experimental Botany 67 (8), pp. 2325 - 2338 (2016)

MPG.PuRe

DOI

119.

Journal Article

Moreno-Romero, J.; Jiang, H.; Santos-Gonzalez, J.; Köhler, C.: Parental epigenetic asymmetry of PRC2-mediated histone modifications in the Arabidopsis endosperm. EMBO Journal 35 (12), pp. 1298 - 1311 (2016)

MPG.PuRe

DOI

120.

Journal Article

Mozgova, I.; Köhler, C.: DNA-sequence-specific erasers of epigenetic memory. Nature Genetics 48 (6), pp. 591 - 592 (2016)

MPG.PuRe

DOI

121.

Journal Article

Mumm, R.; Hageman, J. A.; Calingacion, M. N.; de Vos, R. C. H.; Jonker, H. H.; Erban, A.; Kopka, J.; Hansen, T. H.; Laursen, K. H.; Schjoerring, J. K. et al.; Ward, J. L.; Beale, M. H.; Jongee, S.; Rauf, A.; Habibi, F.; Indrasari, S. D.; Sakhan, S.; Ramli, A.; Romero, M.; Reinke, R. F.; Ohtsubo, K.; Boualaphanh, C.; Fitzgerald, M. A.; Hall, R. D.: Multi-platform metabolomics analyses of a broad collection of fragrant and non-fragrant rice varieties reveals the high complexity of grain quality characteristics. Metabolomics 12 (2), 38 (2016)

MPG.PuRe

DOI

122.

Journal Article

Navarro-Retamal, C.; Bremer, A.; Alzate-Morales, J.; Caballero, J.; Hincha, D. K.; Gonzalez, W.; Thalhammer, A.: Molecular dynamics simulations and CD spectroscopy reveal hydration-induced unfolding of the intrinsically disordered LEA proteins COR15A and COR15B from Arabidopsis thaliana. Physical Chemistry Chemical Physics 18 (37), pp. 25806 - 25816 (2016)

MPG.PuRe

DOI

123.

Journal Article

Nietzsche, M.; Landgraf, R.; Tohge, T.; Börnke, F.: A protein-protein interaction network linking the energy-sensor kinase SnRK1 to multiple signaling pathways in Arabidopsis thaliana. Current Opinion in Plant Biology 5, pp. 36 - 44 (2016)

MPG.PuRe

DOI

124.

Journal Article

Noor, E.; Flamholz, A.; Bar-Even, A.; Davidi, D.; Milo, R.; Liebermeister, W.: The Protein Cost of Metabolic Fluxes: Prediction from Enzymatic Rate Laws and Cost Minimization. PLoS Computational Biology 12 (11), e1005167 (2016)

MPG.PuRe

DOI

Full

125.

Journal Article

Obata, T.; Florian, A.; Timm, S.; Bauwe, H.; Fernie, A. R.: On the metabolic interactions of (photo)respiration. Journal of Experimental Botany 67 (10), pp. 3003 - 3014 (2016)

MPG.PuRe

DOI

126.

Journal Article

Orf, I.; Schwarz, D.; Kaplan, A.; Kopka, J.; Hess, W.R.; Hagemann, M.; Klähn, S.: CyAbrB2 contributes to the transcriptional regulation of low CO2 acclimation in synechocystis sp. PCC 6803. Plant and Cell Physiology 57 (10), pp. 2232 - 2243 (2016)

MPG.PuRe

DOI

Full

127.

Journal Article

Orf, I.; Timm, S.; Bauwe, H.; Fernie, A. R.; Hagemann, M.; Kopka, J.; Nikoloski, Z.: Can cyanobacteria serve as a model of plant photorespiration? - a comparative meta-analysis of metabolite profiles. Journal of Experimental Botany 67 (10), pp. 2941 - 2952 (2016)

MPG.PuRe

DOI

128.

Journal Article

Ostendorp, A.; Pahlow, S.; Krüßel, L.; Hanhart, P.; Garbe, M. Y.; Deke, J.; Giavalisco, P.; Kehr, J.: Functional analysis of Brassica napus phloem protein and ribonucleoprotein complexes. New Phytologist 214 (3), pp. 1188 - 1197 (2016)

MPG.PuRe

DOI

129.

Journal Article

Pade, N.; Erdmann, S.; Enke, H.; Dethloff, F.; Duehring, U.; Georg, J.; Wambutt, J.; Kopka, J.; Hess, W. R.; Zimmermann, R. et al.; Kramer, D.; Hagemann, M.: Insights into isoprene production using the cyanobacterium Synechocystis sp PCC 6803. Biotechnology for Biofuels 9, 89 (2016)

MPG.PuRe

DOI

130.

Journal Article

Perlikowski, D.; Kierszniowska, S.; Sawikowska, A.; Krajewski, P.; Rapacz, M.; Eckhardt, Ä.; Kosmala, A.: Remodeling of Leaf Cellular Glycerolipid Composition under Drought and Re-hydration Conditions in Grasses from the Lolium-Festuca Complex. Frontiers in Plant Science 7, 1027 (2016)

MPG.PuRe

DOI

131.

Journal Article

Pires, M. V.; Pereira Junior, A. A.; Medeiros, D. B.; Daloso, D. M.; Pham, P. A.; Barros, K. A.; Engqvist, M. K. M.; Florian, A.; Krahnert, I.; Maurino, V. G. et al.; Araujo, W. L.; Fernie, A. R.: The influence of alternative pathways of respiration that utilize branched-chain amino acids following water shortage in Arabidopsis. Plant, Cell and Environment 39 (6), pp. 1304 - 1319 (2016)

MPG.PuRe

DOI

132.

Journal Article

Popova, A. V.; Hincha, D. K.: Effects of flavonol glycosides on liposome stability during freezing and drying. Biochimica et Biophysica Acta (BBA) - Biomembranes 1858 (12), pp. 3050 - 3060 (2016)

MPG.PuRe

DOI

Full

133.

Journal Article

Prodhan, M. A.; Jost, R.; Watanabe, M.; Hoefgen, R.; Lambers, H.; Finnegan, P. M.: Tight control of nitrate acquisition in a plant species that evolved in an extremely phosphorus-impoverished environment. Plant, Cell and Environment 39 (12), pp. 2754 - 2761 (2016)

MPG.PuRe

DOI

134.

Journal Article

Riewe, D.; Jeon, H.-J.; Lisec, J.; Heuermann, M. C.; Schmeichel, J.; Seyfarth, M.; Meyer, R. C.; Willmitzer, L.; Altmann, T.: A naturally occurring promoter polymorphism of the Arabidopsis FUM2 gene causes expression variation, and is associated with metabolic and growth traits. The Plant Journal 88, pp. 826 - 838 (2016)

MPG.PuRe

DOI

135.

Journal Article

Rozier, C.; Erban, A.; Hamzaoui, J.; Prigent-Combaret, C.; Comte, G.; Kopka, J.; Legendre, S. C. L.: Xylem Sap Metabolite Profile Changes During Phytostimulation of Maize by the Plant Growth-Promoting Rhizobacterium, Azospirillum lipoferum CRT1. Metabolomics 6 (3), 1000182 (2016)

MPG.PuRe

DOI

136.

Journal Article

Rudovich, N. N.; Pivovarova, O.; Mazuch, J.; Wendt, S.; Tuvia, N.; Kruse, M.; Nikiforova, V.; Murahovschi, V.; Erban, A.; Mosig, A. et al.; Sticht, C.; Goegebakan, O.; Willmitzer, L.; Kramer, A.; Pfeiffer, A. F.: Insulin directly regulates clock gene expression in the insulin-dependent tissues in vivo and in vitro. Diabetologia 59, p. S324 - S324 (2016)

MPG.PuRe

137.

Journal Article

Ruprecht, C.; Mendrinna, A.; Tohge, T.; Sampathkumar, A.; Klie, S.; Fernie, A. R.; Nikoloski, Z.; Persson, S.; Mutwil, M.: FamNet: A Framework to Identify Multiplied Modules Driving Pathway Expansion in Plants. Plant Physiology 170 (3), pp. 1878 - 1894 (2016)

MPG.PuRe

DOI

138.

Journal Article

Sajitz-Hermstein, M.; Nikoloski, Z.: Functional centrality as a predictor of shifts in metabolic flux states. BMC research notes 9 (1), 317 (2016)

MPG.PuRe

DOI

139.

Journal Article

Sajitz-Hermstein, M.; Nikoloski, Z.: Multi-objective shadow prices point at principles of metabolic regulation. Biosystems [Elektronische Ressource]: Journal of Biological and Information Processing Sciences 146, pp. 91 - 101 (2016)

MPG.PuRe

DOI

140.

Journal Article

Sajitz-Hermstein, M.; Töpfer, N.; Kleessen, S.; Fernie, A. R.; Nikoloski, Z.: iReMet-flux: constraint-based approach for integrating relative metabolite levels into a stoichiometric metabolic models. Bioinformatics 32 (17), pp. i755 - i762 (2016)

MPG.PuRe

141.

Journal Article

Salem, M.A.; Jueppner, J.; Bajdzienko, K.; Giavalisco, P.: Protocol: A fast, comprehensive and reproducible one-step extraction method for the rapid preparation of polar and semi-polar metabolites, lipids, proteins, starch and cell wall polymers from a single sample. Plant Methods 12 (1), 45 (2016)

MPG.PuRe

DOI

Full

142.

Journal Article

Sarnowska, E.; Gratkowska, D. M.; Sacharowski, S. P.; Cwiek, P.; Tohge, T.; Fernie, A. R.; Siedlecki, J. A.; Koncz, C.; Sarnowski, T. J.: The Role of SWI/SNF Chromatin Remodeling Complexes in Hormone Crosstalk. Trends in Plant Science 21 (7), pp. 594 - 608 (2016)

MPG.PuRe

143.

Journal Article

Saxe, F.; Weichold, S.; Reinecke, A.; Lisec, J.; Döring, A.; Neumetzler, L.; Burgert, I.; Eder, M.: Age effects on hypocotyl mechanics. PLoS One 11 (12), e0167808 (2016)

MPG.PuRe

DOI

Full

144.

Journal Article

Schimmeyer, J.; Bock, R.; Meyer, E. H.: L-Galactono-1,4-lactone dehydrogenase is an assembly factor of the membrane arm of mitochondrial complex I in Arabidopsis. Plant Molecular Biology 90 (1-2), pp. 117 - 26 (2016)

MPG.PuRe

DOI

145.

Journal Article

Schulz, E.; Tohge, T.; Zuther, E.; Fernie, A. R.; Hincha, D. K.: Flavonoids are determinants of freezing tolerance and cold acclimation in Arabidopsis thaliana. Scientific Reports 6, 34027 (2016)

MPG.PuRe

DOI

146.

Journal Article

Schwahn, K.; Küken, A.; Kliebenstein, D.J.; Fernie, A. R.; Nikoloski, Z.: Observability of plant metabolic networks is reflected in the correlation of metabolic profiles. Plant Physiology 172 (2), pp. 1324 - 1333 (2016)

MPG.PuRe

DOI

Full

147.

Journal Article

Scossa, F.; Brotman, Y.; de Abreu e Lima, F.; Willmitzer, L.; Nikoloski, Z.; Tohge, T.; Fernie, A. R.: Genomics-based strategies for the use of natural variation in the improvement of crop metabolism. Plant Science 242, pp. 47 - 64 (2016)

MPG.PuRe

DOI

148.

Journal Article

Seibert, T.; Thieme, N.; Benz, J. P.: The Renaissance of Neurospora crassa: How a Classical Model System is Used for Applied Research. Gene Expression Systems in Fungi: Advancements and Applications, pp. 59 - 96 (2016)

MPG.PuRe

DOI

149.

Journal Article

Sequera-Mutiozabal, M.I.; Erban, A.; Kopka, J.; Atanasov, K.E.; Bastida, J.; Fotopoulos, V.; Alcázar, R.; Tiburcio, A.F.: Global metabolic profiling of arabidopsis polyamine oxidase 4 (AtPAO4) loss-of-function mutants exhibiting delayed dark-induced senescence. Frontiers in Plant Science 7, 173 (2016)

MPG.PuRe

DOI

150.

Journal Article

Shahnejat-Bushehri, S.; Nobmann, B.; Allu, A. D.; Balazadeh, S.: JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins. Plant Signaling & Behavior 11 (6), e1181245 (2016)

MPG.PuRe

DOI

Journal Article (172)