Journal Article (106)

101.
Journal Article
von Gromoff, E. D.; Schroda, M.; Oster, U.; Beck, C. F.: Identification of a plastid response element that acts as an enhancer within the Chlamydomonas HSP70A promoter. Nucleic Acids Research 34 (17), pp. 4767 - 4779 (2006)
102.
Journal Article
Wagner, S.; Bernhardt, A.; Leuendorf, J. E.; Drewke, C.; Lytovchenko, A.; Mujahed, N.; Gurgui, C.; Frommer, W. B.; Leistner, E.; Fernie, A. R. et al.; Hellmann, H.: Analysis of the Arabidopsis rsr4-1/pdx1-3 mutant reveals the critical function of the PDX1 protein family in metabolism, development, and vitamin B6 biosynthesis. Plant Cell 18 (7), pp. 1722 - 1735 (2006)
103.
Journal Article
Wei, H.; Persson, S.; Mehta, T.; Srinivasasainagendra, V.; Chen, L.; Page, G. P.; Somerville, C.; Loraine, A.: Transcriptional coordination of the metabolic network in Arabidopsis. Plant Physiology 142 (2), pp. 762 - 774 (2006)
104.
Journal Article
Wienkoop, S.; Larrainzar, E.; Niemann, M.; Gonzalez, E. M.; Lehmann, U.; Weckwerth, W.: Stable isotope-free quantitative shotgun proteomics combined with sample pattern recognition for rapid diagnostics. Journal of Separation Science 29 (18), pp. 2793 - 2801 (2006)
105.
Journal Article
Wienkoop, S.; Weckwerth, W.: Relative and absolute quantitative shotgun proteomics: targeting low-abundance proteins in Arabidopsis thaliana. Journal of Experimental Botany 57 (7), pp. 1529 - 1535 (2006)
106.
Journal Article
Wood, C. C.; Poree, F.; Dreyer, I.; Koehler, G. J.; Udvardi, M. K.: Mechanisms of ammonium transport, accumulation, and retention in ooyctes and yeast cells expressing Arabidopsis AtAMT1; 1. FEBS Letters 580 (16), pp. 3931 - 3936 (2006)

Book (5)

107.
Book
Bancroft, I.; Barnes, S.; Li, J.; Meng, J.; Qiou, D.; Schmidt, R.; Trick, M.; Wilmer, J.: Establishment of an Integrated Marker System for Oilseed Rape Breeding (IMSORB) vol. 1. Y.P. Lim, Daejeon, KOR (2006), 195-202 pp.
108.
Book
Laitinen, R. A. E.: The Gerbera cDNA Microarray: A Tool for Large-Scale Identification of Genes Involved in Flower Development. University of Helsinki, Helsinki, FIN (2006)
109.
Book
Mueller-Roeber, B.: Grüne Gentechnologie. Aktuelle Entwicklungen in Wissenschaft und Wirtschaft ; Supplement zum Gentechnologiebericht. Elsevier, München, GER (2006), 180 pp.
110.
Book
Noesberger, J.; Long, S. P.; Norby, J.; Stitt, M.; Hendrey, G. R.; Blum, H.: Managed Ecosystems and CO2: Case Studies, Processes and Perspectives. Springer-Verlag, Berlin, GER (2006), 459 pp.
111.
Book
Wobus, A. M.; Hucho, F.; van den Daele, W.; Koechy, K.; Reich, J.; Rheinberger, H.-J.; Mueller-Roeber, B.; Sperling, K.; Boysen, M.; Koelsch, M.: Stammzellforschung und Zelltherapie. Stand des Wissens und der Rahmenbedingungen in Deutschland. Supplement zum Gentechnologiebericht. Elsevier Spektrum Akademischer Verlag, Heidelberg, Berlin (2006), 295 pp.

Book Chapter (26)

112.
Book Chapter
Carrari, F.; Schauer, N.; Willmitzer, L.; Fernie, A. R.: Systems biology: A renaissance of the Top-down approach for plant analysis. In: Plant Metabolomics, pp. 185 - 198 (Eds. Nagata, T.; Lörz, H.; Widholm, J. M.). Springer-Verlag, Heidelberg, GER (2006)
113.
Book Chapter
Doermann, P.: Galactolipids in plant membranes. In: Buch (Ed. Roberts, K.). Wiley & Sons, Chichester, UK (2006)
114.
Book Chapter
Doermann, P.: Lipid synthesis, metabolism and transport. In: Advances in photosynthesis and respiration. The structure and function of plastids., pp. 335 - 353 (Eds. Wise, R. R.; Hoober, J. K.). Springer-Verlag, Dordrecht, NED (2006)
115.
Book Chapter
Fiehn, O.; Weckwerth, W.: Mass spectrometry: quantitation. In: Encyclopedic Reference of Genomics and Proteomics in Molecular Medicine (Eds. Ganten, D.; Ruckpaul, K.). Springer-Verlag, New York, Heidelberg (2006)
116.
Book Chapter
Geigenberger, P.; Fernie, A. R.: Starch biosynthesis in the potato tuber. In: Food Biochemistry and Food Processing, pp. 253 - 270 (Eds. Hui, Y. H.; Corke, H.; DeLeyn, I.; Nip, W.-K.; Cross, N.). Blackwell Publ., Ames, IA, USA (2006)
117.
Book Chapter
Hawkesford, M.; Hoefgen, R.; Galili, G.; Amir, R.; Angenon, G.; Hesse, H.; Rentsch, D.; Schaller, J.; van der Meer, I.; Rouster, J. et al.; Banfalvi, Z.; Zsolt, P.; Szabados, L.; Szopa, J.; Sirko, A.: Optimising nutritional quality of crops. In: Plant Genetic Engineering: Improving the Nutritional & Therapeutic Qualities of Plants, pp. 85 - 116 (Ed. Jaiwal, P. K.). Studium Press LLC, Houston, TX, USA (2006)
118.
Book Chapter
Hesse, H.; Hoefgen, R.: Nutrient, stress and biological networks. In: European Training and Network Activity. Plant Genomics and Bioinformatics, Expression Microarrays and beyond - a course book, pp. 103 - 117 (Ed. Freitag, J.). Max-Planck-Institute of Molecular Plant Physiology, Potsdam, GER (2006)
119.
Book Chapter
Hincha, D. K.; Popova, A. V.; Cacela, C.: Effects of sugars on the stability and structure of lipid membranes during drying. In: Advances in Planar Lipid Bilayers and Liposomes, Vol. 3, pp. 189 - 217 (Ed. Leitmannova Liu, A.). Elsevier, Amsterdam, NED (2006)
120.
Book Chapter
Hincha, D. K.; Zuther, E.; Hundertmark, M.; Heyer, A. G.: The role of compatible solutes in plant freezing tolerance: a case study on raffinose. In: Cold Hardiness in Plants: Molecular Genetics, Cell Biology and Physiology, pp. 203 - 218 (Eds. Chen, T. H. H.; Uemura, M.; Fujikawa, S.). CABI Publishing (2006)
121.
Book Chapter
Kehr, J.: Gene expression analysis on a tissue-specific level. In: European Training and Network Activity. Plant Genomics and Bioinformatics. Expression Micro Arrays and Beyond - a Course Book, pp. 30 - 35 (Ed. Freitag, J.). Max-Planck-Institute of Molecular Plant Physiology, Potsdam-Golm, GER (2006)
122.
Book Chapter
Kehr, J.; Rep, M.: Protein extraction from xylem and phloem sap. In: Plant Proteomics, pp. 27 - 35 (Eds. Thiellement, H.; Zivy, M.; Damerval, C.; Mechin, V.). Humana Press Inc., Totowa, NJ, USA (2006)
123.
Book Chapter
Kleber, R.; Kehr, J.: Preparation and quality assessment of RNA from cell-specific samples obtained by laser microdissection. In: Arabidopsis Protocols, pp. 367 - 377 (Eds. Sanchez-Serrano, J.; Salinas, J.). Humana Press Inc., Totowa, NJ, USA (2006)
124.
Book Chapter
Kopka, J.: Metabolomics: Comprehensive analysis of metabolism. In: Encyclopedic Reference of Genomics and Proteomics in Molecular Medicine (Eds. Ganten, D.; Ruckpaul, K.). Springer-Verlag, Berlin, Heidelberg (2006)
125.
Book Chapter
Kopka, J.: Gas chromatography mass spectrometry. In: Biotechnology in Agriculture and Forestry, pp. 3 - 20 (Eds. Nagata, T.; Lörz, H.; Widholm, J. M.; Dixon, R. A.; Willmitzer, L.). Springer-Verlag, Berlin, Heidelberg, New York (2006)
126.
Book Chapter
Lytovchenko, A.; Geigenberger, P.; Willmitzer, L.; Fernie, A. R.: Starch content in plant tissues. In: Plant Genetic Engineering: Improving the Nutritional & Therapeutic Qualities of Plants, pp. 1 - 29 (Ed. Jaiwal, P. K.). Studium Press LLC, Houston, TX, USA (2006)
127.
Book Chapter
MacRae, E. A.; Lunn, J. E.: Control of sucrose biosynthesis. In: Advances in Plant Research - Control of Primary Metabolism in Plants, pp. 234 - 257 (Eds. Plaxton, W.; MacManus, M.). Blackwell Publ., Oxford, UK (2006)
128.
Book Chapter
Obel, N.; Erben, V.; Pauly, M.: Functional wall glycomics through oligosaccharide mass profiling. In: The Science and Lore of the Plant Cell Wall, pp. 258 - 266 (Ed. Hayashi, T.). Brown Walker Press, Boca Raton, FL, USA (2006)
129.
Book Chapter
Perrson, S.: The ER and cell calcium. In: The Plant Endoplasmic Reticulum (Plant Cell Monographs), Vol. 4 (Ed. Robinson, D. G.). Springer-Verlag, Berlin, GER (2006)
130.
Book Chapter
Roomp, K.; Beerenwinkel, N.; Sing, T.; Schuelter, E.; Buech, J.; Sierra-Aragon, S.; Daeumer, M.; Hoffmann, D.; Kaiser, R.; Lengauer, T. et al.; Selbig, J.: Arevir: a secure platform for designing personalized antiretroviral therapies against HIV. In: Lecture Notes in Bioinformatics, pp. 185 - 194 (Eds. Leser, U.; Naumann, F.; Eckman, B.). Springer-Verlag, Berlin, Heidelberg (2006)
131.
Book Chapter
Scheffel, A.; Schueler, D.: Magnetosomes in magnetotactic bacteria. In: Complex intracellular structures in prokaryotes, pp. 167 - 191 (Ed. Shively, J. M.). Springer-Verlag, Berlin, Heidelberg (2006)
132.
Book Chapter
Schmidt, R.: Comparative structural genome analysis - transfer of data across species. In: European Training and Network Activity. Plant Genomics and Bioinformatics Expression Micro Arrays and Beyond - a course book, pp. 16 - 29 (Ed. Freitag, J.). Max-Planck-Institute of Molecular Plant Physiology, Potsdam-Golm, GER (2006)
133.
Book Chapter
Steinfath, M.; Scholz, M.; Selbig, J.: Profile data analysis: missing value estimation, dimension reduction, clustering, and classification. In: European Training and Network Activity: Plant Genomics and Bioinformatics - Expression Micro Arrays and Beyong: a course book., pp. 193 - 200 (Ed. Freitag, J.). Max-Planck-Institute of Molecular Plant Physiology, Potsdam, GER (2006)
134.
Book Chapter
Steinhauser, D.; Usadel, B.: CSB.DB - A Comprehensive Systems-Biology Database: Overview and Transcriptional Co-Response (Correlation) Analysis. In: Plant Genomics and Bioinformatics Expression Micro Arrays and Beyond - a course book, pp. 190 - 192 (Ed. Freitag, J.). MPI-MP, Potsdam-Golm (2006)
135.
Book Chapter
Teeri, T. H.; Kotilainen, M.; Uimari, A.; Ruokolainen, S.; Ng, Y. P.; Malm, U.; Pollanen, E.; Broholm, S.; Laitinen, R.; Elomaa, P. et al.; Albert, V. A.: Floral developmental genetics of Gerbera (Asteraceae). In: Developmental Genetics of the Flower, 323, pp. 323 - 351 (Eds. Soltis, D. E.; Leebens-Mack, J. H.; Soltis, P. S.; Callow, J. A.). Academic Press, San Diego, CA, USA (2006)
136.
Book Chapter
Tiessen, A.; Lunn, J. E.; Geigenberger, P.: Carbohydrate metabolism under water limited conditions. In: Drought Tolerance In Cereals, pp. 449 - 503 (Ed. Ribaut, J. I. M.). The Haworth Press, Inc., Binghampton, NY, USA (2006)
137.
Book Chapter
Udvardi, M. K.; Ott, T.; Krusell, L.; Desbrosses, G.; Voroshilova, V.; Colebatch, G.; Wandrey, M.; Montanari, O.; Kakar, K.; Krause, K. et al.; Guenther, C.; van Dongen, J. T.; Vigeolas, H.; Geigenberger, P.; Kraemer, U.; Kloska, S.; Kopka, J.; Sato, S.; Nakamura, Y.; Tabata, S.; James, E. K.; Kawaguchi, M.; Miyamoto, A.; Suganuma, N.; Sandal, N.; Stougaard, J.: Insights into nodule physiology and metabolism from transcriptomics, metabolomics, bioinformatics, and genetics. In: Biology of plant-microbe interactions, Vol. 5, pp. 96 - 102 (Eds. Sánchez, F.; Quinto, C.; López-Lara, I. M.; Geiger, O.). ISMPMI, St. Paul, MN, USA (2006)

Conference Paper (1)

138.
Conference Paper
Grell, S.; Schaub, T.; Selbig, J.: Modelling biological networks by action languages via answer set programming. In: Twenty Second International Conference on Logic Programming (ICLP), pp. 285 - 299. Twenty Second International Conference on Logic Programming (ICLP), Seattle, Washington, USA. Springer, Heidelberg, Berlin (2006)

Meeting Abstract (1)

139.
Meeting Abstract
Salazar, C.; Schutze, J.; Ebenhoeh, O.: Bioinformatics meets systems biology. In Genome Biology, 7 (1), p. 303. (2006)

Other (1)

140.
Other
Wolschin, F.; Weckwerth, W.: Methionine oxidation in peptides-a source for false positive phosphopeptide identification in neutral loss driven MS(3), Rapid Communications in Mass Spectrometry 20, pp. 2516 - 2518 (2006)

Review Article (19)

141.
Review Article
Köhler, C.; Makarevich, G.: Epigenetic mechanisms governing seed development in plants. (2006)
142.
Review Article
Benedito, V. A.; Dai, X. B.; He, J.; Zhao, P. X.; Udvardi, M. K.: Functional genomics of plant transporters in legume nodules. (2006)
143.
Review Article
Carrari, F.; Baxter, C.; Usadel, B.; Urbanczyk-Wochniak, E.; Zanor, M. I.; Nunes-Nesi, A.; Nikiforova, V.; Centero, D.; Ratzka, A.; Pauly, M. et al.; Sweetlove, L. J.; Fernie, A. R.: Integrated analysis of metabolite and transcript levels reveals the metabolic shifts that underlie tomato fruit development and highlight regulatory aspects of metabolic network behavior. (2006)
144.
Review Article
Carrari, F.; Fernie, A. R.: Metabolic regulation underlying tomato fruit development. (2006)
145.
Review Article
Cordes, F.; Kaiser, R.; Selbig, J.: Bioinformatics approach to predicting HIV drug resistance. (2006)
146.
Review Article
Domoney, C.; Duc, G.; Ellis, T. H. N.; Ferrandiz, C.; Firnhaber, C.; Gallardo, K.; Hofer, J.; Kopka, J.; Kuester, H.; Madueno, F. et al.; Munier-Jolain, N. G.; Mayer, K.; Thompson, R.; Udvardi, M. K.; Salon, C.: Genetic and genomic analysis of legume flowers and seeds. (2006)
147.
Review Article
Fernie, A. R.; Tadmor, Y.; Zamir, D.: Natural genetic variation for improving crop quality. (2006)
148.
Review Article
Glinski, M.; Weckwerth, W.: The role of mass spectrometry in plant systems biology. (2006)
149.
Review Article
Hesse, H.; Hoefgen, R.: On the way to understand biological complexity in plants: S-nutrition as a case study for systems biology. (2006)
150.
Review Article
Kehr, J.: Phloem sap proteins: their identities and potential roles in the interaction between plants and phloem-feeding insects. (2006)
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