Publications of the MPI

51.

Journal Article

Siqueira, J. A.; Zhang, Y.; Nunes-Nesi, A.; Fernie, A. R.; Araújo, W. L.: Beyond photorespiration: the significance of glycine and serine in leaf metabolism. Trends in Plant Science 28 (10), pp. 1092 - 1094 (2023)

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52.

Journal Article

Sperschneider, J.; Yildirir, G.; Rizzi , Y. S.; Malar C, M.; Mayrand Nicol, A.; Sorwar, E.; Villeneuve-Laroche, M.; Chen, E. C. H.; Iwasaki, W.; Brauer, E. K. et al.; Bosnich, W.; Gutjahr, C.; Corradi, N.: Arbuscular mycorrhizal fungi heterokaryons have two nuclear populations with distinct roles in host–plant interactions. Nature Microbiology 8, pp. 2142 - 2153 (2023)

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53.

Journal Article

Steensma, P.; Eisenhut, M.; Colinas, M.; Rosado-Souza, L.; Fernie, A. R.; Weber, A. P. M.; Fitzpatrick, T. B.: PYRIDOX(AM)INE 5'-PHOSPHATE OXIDASE3 of Arabidopsis thaliana maintains carbon/nitrogen balance in distinct environmental conditions. Plant Physiology 193 (2), kiad411, pp. 1433 - 1455 (2023)

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54.

Journal Article

Tong, H.; Laitinen, R.A.E.; Nikoloski, Z.: Predicting plasticity of rosette growth and metabolic fluxes in Arabidopsis thaliana. New Phytologist 240 (1), pp. 426 - 438 (2023)

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55.

Journal Article

Wan, H.; Zhang, Y.; Wu, L.; Zhou, G.; Pan, L.; Fernie, A. R.; Ruan, Y.-L.: Evolution of cytosolic and organellar invertases empowered the colonization and thriving of land plants. Plant Physiology 193 (2), pp. 1227 - 1243 (2023)

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56.

Journal Article

Weiszmann, J.; Walther, D.; Clauw, P.; Back, G.; Gunis, J.; Reichardt, I.; Koemeda, S.; Jez, J.; Nordborg, M.; Schwarzerova, J. et al.; Pierides, I.; Nägele, T.; Weckwerth, W.: Metabolome plasticity in 241 Arabidopsis thaliana accessions reveals evolutionary cold adaptation processes. Plant Physiology 193 (2), pp. 980 - 1000 (2023)

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57.

Journal Article

Younis, I.Y.; Mohsen, E.; Ibrahim, R.M.; Fernie, A. R.; Alseekh, S.; Salem, M.A.: Non-targeted metabolomics and chemometrics for saffron (Crocus sativus L.) authentication and adulteration detection in relation to its anticholinesterase activity. Food Chemistry Advances 2, 100217 (2023)

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58.

Journal Article

Aarabi, F.; Fernie, A. R.: Elucidating the role of ascorbate in light signaling. Trends in Plant Science 28 (9), pp. 978 - 980 (2023)

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59.

Journal Article

Aarabi, F.; Fernie, A. R.: SPOTLIGHT: Ascorbate triggers the switch between cell division and cell differentiation in the Arabidopsis tapetum. Journal of Plant Physiology 288, 154058 (2023)

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60.

Journal Article

Bezold, F.; Scheffer, J.; Wendering, P.; Razaghi-Moghadam, Z.; Trauth, J.; Pook, B.; Nußhär, H.; Hasenjäger, S.; Nikoloski, Z.; Essen, L.-O. et al.; Taxis, C.: Optogenetic control of Cdc48 for dynamic metabolic engineering in yeast. Metabolic Engineering 79, pp. 97 - 107 (2023)

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61.

Journal Article

Collas, F.; Dronsella, B.; Kubis, A.; Schann, K.; Binder, S.; Arto, N.; Claassens, N.J.; Kensy, F.; Orsi, E.: Engineering the biological conversion of formate into crotonate in Cupriavidus necator. Metabolic Engineering 79, pp. 49 - 65 (2023)

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62.

Journal Article

Figueroa, N. E.; Franz, P.; Luzarowski, M.; Martinez-Seidel, F.; Moreno, J.C.; Childs, D.; Ziemblicka, A.; Sampathkumar, A.; Andersen, T. G.; Tsiavaliaris, G. et al.; Kosmacz, M.; Skirycz, A.: Protein interactome of 3’,5’-cyclic adenosine monophosphate reveals its role in regulating the actin cytoskeleton. The Plant Journal 115 (5), pp. 1214 - 1230 (2023)

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63.

Journal Article

Hashemi, S.; Razaghi-Moghadam, Z.; Nikoloski, Z.: Maximizing multi-reaction dependencies provides more accurate and precise predictions of intracellular fluxes than the principle of parsimony. PLoS Computational Biology 19 (9), e1011489 (2023)

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64.

Journal Article

Köhler, C.; Butel, N.: Plant development: How to kill the endosperm. Current Biology 33 (17), pp. R912 - R913 (2023)

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65.

Journal Article

Langary, D.; Küken, A.; Nikoloski, Z.: The effective deficiency of biochemical networks. Scientific Reports 13, 14589 (2023)

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66.

Journal Article

Li, R.; Tang, F.; Che, Y.; Fernie, A. R.; Zhou, Q.; Ding, Z.; Yao, Y.; Liu, J.; Wang, Y.; Hu, X. et al.; Guo, J.: MeGLYI-13, a Glyoxalase I Gene in Cassava, Enhances the Tolerance of Yeast and Arabidopsis to Zinc and Copper Stresses. Plants 12 (19), 3375 (2023)

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67.

Journal Article

Qiu, Y.; Li, Z.; Walther, D.; Köhler, C.: Updated phylogeny and protein structure predictions revise the hypothesis on the origin of MADS-box transcription factors in land plants. Molecular Biology and Evolution 40 (9), msad194 (2023)

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68.

Journal Article

Solis-Miranda, J.; Chodasiewicz, M.; Skirycz, A.; Fernie, A. R.; Moschou, P.; Bozhkov, P.; Gutierrez-Beltran, E.: Stress-related biomolecular condensates in plants. Plant Cell 35 (9), pp. 3187 - 3204 (2023)

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69.

Journal Article

Tal, L.; Guercio, A. M.; Varshney, K.; Young, A.; Gutjahr, C.; Shabek, N.: C-terminal conformational changes in SCF-D3/MAX2 ubiquitin ligase are required for KAI2-mediated signaling. New Phytologist 239 (6), pp. 2067 - 2075 (2023)

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70.

Journal Article

Thirumalaikumar, V.P.; Fernie, A. R.; Skirycz, A.: Untargeted Proteomics and Metabolomics Analysis of Plant Organ Development. Methods in molecular biology (Clifton, N.J.) 2698, pp. 75 - 85 (2023)

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71.

Journal Article

Zayed, A.; Farag, M. A.; Mehring, A.; Salem, M. A.; Ibrahim, R. M.; Alseekh, S.; Fernie, A. R.; Ulber, R.: Methyl jasmonate elicitation effect on the metabolic profile of cambial meristematic cells culture derived from sweet basil (Ocimum basilicum L.) in relation to antioxidant activity: Untargeted metabolomics study in a time-based approach. Phytochemistry 213, 113777 (2023)

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72.

Journal Article

Zhou, Q.; Li, R.; Fernie, A. R.; Che, Y.; Ding, Z.; Yao, Y.; Liu, J.; Wang, Y.; Hu, X.; Guo, J.: Integrated Analysis of Morphological, Physiological, Anatomical and Molecular Responses of Cassava Seedlings to Different Light Qualities. International Journal of Molecular Sciences 24 (18), 14224 (2023)

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73.

Journal Article

Alseekh, S.; Karakas, E.; Zhu, F.; Wijesingha Ahchige, M.; Fernie, A. R.: Plant biochemical genetics in the multiomics era. Journal of Experimental Botany 74 (15), pp. 4293 - 4307 (2023)

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74.

Journal Article

Arend, M.; Zimmer, D.; Xu, R.; Sommer, F.; Mühlhaus, T.; Nikoloski, Z.: Proteomics and constraint-based modelling reveal enzyme kinetic properties of Chlamydomonas reinhardtii on a genome scale. Nature Communications 14 (1), 4781 (2023)

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75.

Journal Article

Correa Cordoba, S.; Tong, H.; Burgos, A.; Zhu, F.; Alseekh, S.; Fernie, A. R.; Nikoloski, Z.: Identification of gene function based on models capturing natural variability of Arabidopsis thaliana lipid metabolism. Nature Communications 14 (1), 4897 (2023)

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76.

Journal Article

de Souza, L. P.; Bitocchi, E.; Papa, R.; Tohge, T.; Fernie, A. R.: Decreased metabolic diversity in common beans associated with domestication revealed by untargeted metabolomics, information theory, and molecular networking. The Plant Journal 115 (4), pp. 1021 - 1036 (2023)

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77.

Journal Article

Garcia, F. H. S.; Domingues Júnior, A.P.; Lima Nogueira, M.; de Paula, S.; Ferreira, J.; Lavres, J.; Martins, S. J.; Fernie, A. R.; Kluge, R. A.: Impact of Leifsonia xyli subsp. xyli titer on nutritional status, and metabolism of sugar cane. Plant and Soil 493, pp. 341 - 354 (2023)

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78.

Journal Article

Gramma, V.; Wahl, V.: RNA In Situ Hybridization on Plant Tissue Sections: Expression Analysis at Cellular Resolution. Methods in molecular biology (Clifton, N.J.) 2686 (2023)

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79.

Journal Article

He, Y.; Zhang, K.; Li, S.; Lu, X.; Zhao, H.; Guan, C.; Huang, X.; Shi, Y.; Kang, Z.; Fan, Y. et al.; Li, W.; Chen, C.; Li, G.; Long, O.; Chen, Y.; Hu, M.; Cheng, J.; Xu, B.; Chapman, M. A.; Georgiev, M. I.; Fernie, A. R.; Zhou, M.: Multi-omics analysis reveals the molecular mechanisms underlying virulence in Rhizoctonia and jasmonic acid–mediated resistance in Tartary buckwheat (Fagopyrum tataricum). The Plant Cell 35 (8), pp. 2773 - 2798 (2023)

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80.

Journal Article

Jing, Y.; Watanabe, M.; Aarabi, F.; Fernie, A. R.; Borghi, M.; Tohge, T.: Cross-Species Metabolomic Analyses In The Brassicaceae Reveals Common Responses To Ultraviolet-B Exposure. Plant and Cell Physiology 64 (12), pp. 1523 - 1533 (2023)

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81.

Journal Article

Lima, V.F.; Freire, F.B.S.; Cândido-Sobrinho, S.A.; Porto, N.P.; Medeiros, D.B.; Erban, A.; Kopka, J.; Schwarzländer, M.; Fernie, A. R.; Daloso, D.M.: Unveiling the dark side of guard cell metabolism. Plant Physiology and Biochemistry 201, 107862 (2023)

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82.

Journal Article

Segarra-Medina, C.; Pascual, L. S.; Alseekh, S.; Fernie, A. R.; Rambla, J. L.; Gómez-Cadenas, A.; Zandalinas, S. I.: Comparison of metabolomic reconfiguration between Columbia and Landsberg ecotypes subjected to the combination of high salinity and increased irradiance. BMC Plant Biology 23, 406 (2023)

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83.

Journal Article

Tedesco, S.; Irisarri, P.; Teixeira Santos, M.; Fevereiro, P.; Pina, A.; Kragler, F.: Early detection of grapevine graft incompatibility: Insights into translocated and virus-induced incompatibility. Scientia Horticulturae 318, 112087 (2023)

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84.

Journal Article

Yokoyama, R.: AOX in action—making plant mitochondrial metabolism special. Plant Physiology 192 (4), pp. 2585 - 2857 (2023)

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85.

Journal Article

Babadi, F. S.; Razaghi-Moghadam, Z.; Zare-Mirakabad, F.; Nikoloski, Z.: Prediction of metabolite-protein interactions based on integration of machine learning and constraint-based modeling. Bioinformatics advances 3 (1), vbad098 (2023)

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86.

Journal Article

Caldana, C.; Carrari, F.; Fernie, A. R.; Sampathkumar, A.: How metabolism and development are intertwined in space and time. The Plant Journal 116 (2), pp. 347 - 359 (2023)

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87.

Journal Article

Chialva, M.; Patono, D.; de Souza, L. P.; Novero, M.; Vercellino, S.; Maghrebi, M.; Morgante, M.; Lovisolo, C.; Vigani, G.; Fernie, A. R. et al.; Fiorilli, V.; Lanfranco, L.; Bonfante, P.: The mycorrhizal root-shoot axis elicits Coffea arabica growth under low phosphate conditions. New Phytologist 239 (1), pp. 271 - 285 (2023)

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88.

Journal Article

Chmielewski, M. W.; Naya, S.; Borghi, M.; Cortese, J.; Fernie, A. R.; Swartz, M. T.; Zografou, K.; Sewall, B. J.; Spigler, R. B.: Phenology and foraging bias contribute to sex-specific foraging patterns in the rare declining butterfly Argynnis idalia idalia. Ecology and Evolution 13 (7), e10287 (2023)

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89.

Journal Article

Chmielewski, M.; Naya, S.; Borghi, M.; Cortese, J.; Fernie, A. R.; Swartz, M.; Zografou, K.; Sewall, B.; Spigler, R.: Phenology and foraging bias contribute to sex-specific foraging patterns in the rare declining butterfly Argynnis idalia idalia. Ecology and Evolution 13 (7), e10287 (2023)

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90.

Journal Article

Dong, Y.; Gupta, S.; Wargent, J.J.; Putterill, J.; Macknight, R.C.; Gechev, T.S.; Mueller-Roeber, B.; Dijkwel, P.P.: Comparative Transcriptomics of Multi-Stress Responses in Pachycladon cheesemanii and Arabidopsis thaliana. International Journal of Molecular Sciences 24 (14), 11323 (2023)

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91.

Journal Article

Fernie, A. R.; Alseekh, S.: Phylogenomic discovery of deleterious mutants completes the potato breeding revolution. Molecular Plant 16 (7), pp. 1103 - 1105 (2023)

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92.

Journal Article

Hasbioğlu, Y.; Weber, S.; Kragler, F.; Machin, F.: Arabidopsis callus-grafts: A system to study symplasmic intercellular macromolecular transport and gene silencing spread. The Plant Journal 115 (2), pp. 301 - 316 (2023)

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93.

Journal Article

Mbebi, A. J.; Nikoloski, Z.: Gene regulatory network inference using mixed-norms regularized multivariate model with covariance selection. PLoS Computational Biology 19 (7), e1010832 (2023)

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94.

Journal Article

Moing, A.; Berton, T.; Roch, L.; Diarrassouba, S.; Bernillon, S.; Arrivault, S.; Deborde, C.; Maucourt, M.; Cabasson, C.; Bénard, C. et al.; Prigent, S.; Jacob, D.; Gibon, Y.; Lemaire-Chamley, M.: Multi-omics quantitative data of tomato fruit unveils regulation modes of least variable metabolites. BMC Plant Biology 23, 365 (2023)

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95.

Journal Article

Salem, M. A.; Aborehab, N. M.; Abdelhafez, M. M.; Ismail, S. H.; Maurice, N. W.; Azzam, M. A.; Alseekh, S.; Fernie, A. R.; Salama, M. M.; Ezzat, S. M.: Anti-Obesity Effect of a Tea Mixture Nano-Formulation on Rats Occurs via the Upregulation of AMP-Activated Protein Kinase/Sirtuin-1/Glucose Transporter Type 4 and Peroxisome Proliferator-Activated Receptor Gamma Pathways. Metabolites 13 (7), 871 (2023)

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96.

Journal Article

Wang, S.; Li, R.; Zhou, Y.; Fernie, A. R.; Ding, Z.; Zhou, Q.; Che, Y.; Yao, Y.; Liu, J.; Wang, Y. et al.; Hu, X.; Guo, J.: Integrated Characterization of Cassava (Manihot esculenta) Pectin Methylesterase (MePME) Genes to Filter Candidate Gene Responses to Multiple Abiotic Stresses. Plants 12 (13), 2529 (2023)

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97.

Journal Article

Zhang, Y.; Fernie, A. R.: Leveraging glycoside-targeted metabolomics to gain insight into biological function. Trends in Plant Science 28 (7), pp. 737 - 739 (2023)

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98.

Journal Article

Zhao, L.; Wang, H.-J.; Martins, P. D.; van Dongen; T., J.; Bolger, A. M.; Schmidt, R. R.; Jing, H.-C.; Mueller-Roeber, B.; Schippers, J. H. M.: The Arabidopsis thaliana onset of leaf death 12 mutation in the lectin receptor kinase P2K2 results in an autoimmune phenotype. BMC Plant Biology 23 (1), 294 (2023)

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99.

Journal Article

Aarabi, F.; Salem, M. A.; Arrivault, S.; Bulut, M.; Schöttler, M. A.; Giavalisco, P.; Fernie, A. R.; Hoefgen, R.: The regulation of sulfolipids under sulfur starvation. Plant Molecular Biology 112, pp. 195 - 198 (2023)

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100.

Journal Article

Alseekh, S.; Fernie, A. R.: Expanding our coverage: Strategies to detect a greater range of metabolites. Current Opinion in Plant Biology 73, 102335 (2023)

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Journal Article (193)