Publications of the MPI

Max Planck Institute of Molecular Plant Physiology

Journal Article (193)

51.

Journal Article

Borghi, M.; de Souza, L. P.; Tohge, T.; Mi, J.; Melandri, G.; Proost, S.; Martins, M.; Al-Babili, S.; Bouwmeester, H.; Fernie, A. R.: High-energy-level metabolism and transport occur at the transition from closed to open flowers. Plant Physiology 190 (1), pp. 319 - 339 (2022)

MPG.PuRe

52.

Journal Article

Golczyk, H.; Hřibová, E.; Doležel, J.; Cuadrado, Á.; Garbsch, F.; Greiner, S.; Janeczko, M.; Szklarczyk, M.; Masłyk, M.; Kubiński, K.: Migration of repetitive DNAs during evolution of the permanent translocation heterozygosity in the oyster plant (Tradescantia section Rhoeo). Chromosoma: Biology of the Nucleus 131, pp. 163 - 173 (2022)

MPG.PuRe

53.

Journal Article

Heinze, J.; Krumpholz, L.; Blaum, N.; Hoefgen, R.; Ogden, M.: Shoot herbivory by grasshoppers has stronger effects on root morphology than clipping. Plant Ecology 223, pp. 1069 - 1078 (2022)

MPG.PuRe

54.

Journal Article

Huß, S.; Judd, R. S.; Koper, K.; Maeda, H. A.; Nikoloski, Z.: An automated workflow that generates atom mappings for large-scale metabolic models and its application to Arabidopsis thaliana. The Plant Journal 111 (5), pp. 1486 - 1500 (2022)

MPG.PuRe

55.

Journal Article

Mbebi, A. J.; Breitler, J.-C.; Bordeaux, M.; Sulpice, R.; McHale, M.; Tong, H.; Toniutti, L.; Castillo, J. A.; Bertrand, B.; Nikoloski, Z.: A comparative analysis of genomic and phenomic predictions of growth-related traits in 3-way coffee hybrids. G3: Genes, Genomes, Genetics 12 (9), jkac170 (2022)

MPG.PuRe

56.

Journal Article

Medeiros, D.B.; Ishihara, H.; Guenther, M.; Rosado-Souza, L.; Fernie, A. R.; Stitt, M.; Arrivault, S.: 13CO2 Labelling Kinetics in Maize Reveal Impaired Efficiency of C4 Photosynthesis under Low Irradiance. Plant Physiology 190 (1), pp. 280 - 304 (2022)

MPG.PuRe

57.

Journal Article

Sampathkumar, A.; Meyerowitz, E.: Cellulose synthase complexes-microtubules interaction hinders mechano-response. Nature Plants 8, pp. 988 - 989 (2022)

MPG.PuRe

58.

Journal Article

Tiozon, R.J.N.; Sartagoda, K. J. D.; Serrano, L. M. N.; Fernie, A. R.; Sreenivasulu, N.: Metabolomics based inferences to unravel phenolic compound diversity in cereals and its implications for human gut health. Trends in Food Science & Technology 127, pp. 14 - 25 (2022)

MPG.PuRe

59.

Journal Article

Wang, C.-W.; Michelle Wong, J.-W.; Yeh, S.-S.; Hsieh, Y. E.; Tseng, C.-H.; Yang, S.-H.; Tang, S.-L.: Soil Bacterial Community May Offer Solutions for Ginger Cultivation. Microbiology Spectrum 10 (5), e01803-22 (2022)

MPG.PuRe

60.

Journal Article

Yan, S.; Liu, Q.; Li, W.; Yan, J.; Fernie, A. R.: Raffinose Family Oligosaccharides: Crucial Regulators of Plant Development and Stress Responses. Critical Reviews in Plant Sciences 41 (4), pp. 286 - 303 (2022)

MPG.PuRe

61.

Journal Article

Zhang, Y.; Fernie, A. R.: Dynamically regulating metabolic fluxes with synthetic metabolons. Trends in Biotechnology 40 (9), pp. 1019 - 1020 (2022)

MPG.PuRe

62.

Journal Article

Zhou, J.; Liu, C.; Chen, Q.; Liu, L.; Niu, S.; Chen, R.; Li, K.; Sun, Y.; Shi, Y.; Yang, C. et al.; Shen, S.; Li, Y.; Xing, J.; Yuan, H.; Liu, X.; Fang, C.; Fernie, A. R.; Luo, J.: Integration of rhythmic metabolome and transcriptome provides insights into the transmission of rhythmic fluctuations and temporal diversity of metabolism in rice. SCIENCE CHINA-LIFE SCIENCES 65, pp. 1764 - 1810 (2022)

MPG.PuRe

63.

Journal Article

Zhu, F.; Jadhav, S. S.; Tohge, T.; Salem, M. A.; Li, J. M.; Giovannoni, J. J.; Cheng, Y.; Alseekh, S.; Fernie, A. R.: A comparative transcriptomics and eQTL approach identifies SlWD40 as a tomato fruit ripening regulator. Plant Physiology 190 (1), pp. 250 - 266 (2022)

MPG.PuRe

64.

Journal Article

Zhang, J.; Chi, X.; Zhong, J.; Fernie, A. R.; Alseekh, S.; Huang, L.; Qian, D.: Extensive nrDNA ITS polymorphism in Lycium: Non-concerted evolution and the identification of pseudogenes. Frontiers in Plant Science 13, 984579 (2022)

MPG.PuRe

65.

Journal Article

Naves, E. R.; Scossa, F.; Araújo, W. L.; Nunes-Nesi, A.; Fernie, A. R.; Zsögön, A.: Heterosis for capsacinoids accumulation in chili pepper hybrids is dependent on parent-of-origin effect. Scientific Reports 12 (1), 14450 (2022)

MPG.PuRe

66.

Journal Article

Schneider, R.; Ehrhardt, D. W.; Meyerowitz, E. M.; Sampathkumar, A.: Tethering of cellulose synthase to microtubules dampens mechano-induced cytoskeletal organization in Arabidopsis pavement cells. Nature Plants 8, pp. 1064 - 1073 (2022)

MPG.PuRe

67.

Journal Article

Matz, T.; Wang, Y.; Kulshreshtha, R.; Sampathkumar, A.; Nikoloski, Z.: Topological properties accurately predict cell division events and organization of shoot apical meristem in Arabidopsis thaliana. Development 149 (16), dev201024 (2022)

MPG.PuRe

68.

Journal Article

Gui, S.; Wei, W.; Jiang, C.; Luo, J.; Chen, L.; Wu, S.; Li, W.; Wang, Y.; Li, S.; Yang, N. et al.; Li, Q.; Fernie, A. R.; Yan, J.: A pan-Zea genome map for enhancing maize improvement. Genome Biology: Biology for the Post-Genomic Era 23 (1), 178 (2022)

MPG.PuRe

69.

Journal Article

Joo, J.; Kim, M.; Cho, Y.; Fernie, A. R.; Sung, J.: Transcriptional Comparison of Genes Associated with Photosynthesis, Photorespiration, and Photo-Assimilate Allocation and Metabolic Profiling of Rice Species. International Journal of Molecular Sciences 23 (16), 16 (2022)

MPG.PuRe

70.

Journal Article

Wang, Y.; Li, W.; Wang, L.; Yan, J.; Lu, G.; Yang, N.; Xu, J.; Wang, Y.; Gui, S.; Chen, G. et al.; Li, S.; Wu, C.; Guo, T.; Xiao, Y.; Warburton, M. L.; Fernie, A. R.; Dresselhaus, T.; Yan, J.: Three types of genes underlying the Gametophyte factor1 locus cause unilateral cross incompatibility in maize. Nature Communications 13 (1), 4498 (2022)

MPG.PuRe

71.

Journal Article

Feitosa-Araujo, E.; da Fonseca-Pereira, P.; Pena, M.; Lana-Costa, J.; Coelho, D.; Silva, F.; Medeiros, D.B.; Linka, N.; Araujo, W.; Weber, A. et al.; Fernie, A. R.; Nunes-Nesi, A.: Mitochondrial and peroxisomal NAD(+) uptake are important for improved photosynthesis and seed yield under elevated CO2 concentrations. The Plant Journal 111 (3), pp. 713 - 730 (2022)

MPG.PuRe

72.

Journal Article

Ishihara, H.; Alseekh, S.; Feil, R.; Perera, P.; George, G. M.; Niedzwiecki, P.; Arrivault, S.; Zeeman, S. C.; Fernie, A. R.; Lunn, J. E. et al.; Smith, A. M.; Stitt, M.: Rising rates of starch degradation during daytime and trehalose 6-phosphate optimize carbon availability. Plant Physiology 189 (4), pp. 1976 - 2000 (2022)

MPG.PuRe

73.

Journal Article

Moraes, T. A.; Mengin, V.; Peixoto, B.; Encke, B.; Krohn, N.; Höhne, M.; Krause, U.; Stitt, M.: The circadian clock mutant lhy cca1 elf3 paces starch mobilization to dawn despite severely disrupted circadian clock function. Plant Physiology 189, pp. 2332 - 2356 (2022)

MPG.PuRe

74.

Journal Article

Otero, S.; Gildea, I.; Roszak, P.; Lu, Y.; Di Vittori, V.; Bourdon, M.; Kalmbach, L.; Blob, B.; Heo, J.-o.; Peruzzo, F. et al.; Laux, T.; Fernie, A. R.; Tavares, H.; Helariutta, Y.: A root phloem pole cell atlas reveals common transcriptional states in protophloem-adjacent cells. Nature Plants 8, pp. 954 - 970 (2022)

MPG.PuRe

75.

Journal Article

Hashemi, S.; Razaghi-Moghadam, Z.; Laitinen, R.A.E.; Nikoloski, Z.: Relative flux trade-offs and optimization of metabolic network functionalities. Computational and Structural Biotechnology Journal 20, pp. 3963 - 3971 (2022)

MPG.PuRe

76.

Journal Article

Schulz-Mirbach, H.; Mueller, A.; Wu, T.; Pfister, P.; Aslan, S.; Schada von Borzyskowski, L.; Erb , T.J.; Bar-Even, A.; Lindner, S. N.: On the flexibility of the cellular amination network in E. coli. eLife 11, e77492 (2022)

MPG.PuRe

77.

Journal Article

Chew, Y. H.; Seaton, D. D.; Mengin, V.; Flis, A.; Mugford, S. T.; George, G. M.; Moulin, M.; Hume, A.; Zeeman, S. C.; Fitzpatrick, T. B. et al.; Smith, A. M.; Stitt, M.; Millar, A. J.: The Arabidopsis Framework Model version 2 predicts the organism-level effects of circadian clock gene mis-regulation. in silico Plants 4 (2), diac010 (2022)

MPG.PuRe

78.

Journal Article

Martinez Rivas, F.J.; Blanco-Portales, R.; Molina-Hidalgo, F.; Caballero, J.; de Souza, L. P.; Alseekh, S.; Fernie, A. R.; Munoz-Blanco, J.; Rodriguez-Franco, A.: Azacytidine arrests ripening in cultivated strawberry (Fragaria x ananassa) by repressing key genes and altering hormone contents. BMC Plant Biology 22 (1), 278 (2022)

MPG.PuRe

79.

Journal Article

Mulugeta Aneley, G.; Haas, M.; Koehl, K. I.: LIDAR-Based Phenotyping for Drought Response and Drought Tolerance in Potato. Potato Research 66, pp. 1225 - 1256 (2022)

MPG.PuRe

80.

Journal Article

Wei, S.; Li, X.; Lu, Z.; Zhang, H.; Ye, X.; Zhou, Y.; Li, J.; Yan, Y.; Pei, H.; Duan, F. et al.; Wang, D.; Chen, S.; Wang, P.; Zhang, C.; Shang, L.; Zhou, Y.; Yan, P.; Zhao, M.; Huang, J.; Bock, R.; Qian, Q.; Zhou, W.: A transcriptional regulator that boosts grain yields and shortens the growth duration of rice. Science 377, 6604 (2022)

MPG.PuRe

81.

Journal Article

Lopez, L. S.; Völkner, C.; Day, P. M.; Lewis, C. M.; Lewis, C. L.; Schneider, D.; Correa Galvis, V.; Cruz, J. A.; Armbruster, U.; Kramer, D. M. et al.; Kunz, H.-H.: The Arabidopsis T-DNA mutant SALK_008491 carries a 14-kb deletion on chromosome 3 that provides rare insights into the plant response to dynamic light stress. Plant Direct 6 (7), e429 (2022)

MPG.PuRe

82.

Journal Article

Palos, K.; Dittrich, A.; Yu, L.; Brock, J.; Railey, C.; Wu, H.; Sokolowska, E.; Skirycz, A.; Hsu, P.; Gregory, B. et al.; Lyons, E.; Beilstein, M.; Nelson, A.: Identification and functional annotation of long intergenic non-coding RNAs in Brassicaceae. The Plant Cell 34 (9), pp. 3233 - 3260 (2022)

MPG.PuRe

83.

Journal Article

Pereira, A. M.; Martins, A. O.; Batista-Silva, W.; Condori-Apfata, J. A.; Nascimento, V. L.; Silva, V. F.; Oliveira, L. A.; Medeiros, D.B.; Martins, S. C. V.; Fernie, A. R. et al.; Nunes-Nesi, A.; Araújo, W. L.: Elevated carbon assimilation and metabolic reprogramming in tomato high pigment mutants support the increased production of pigments. Plant Cell Reports 41, pp. 1907 - 1929 (2022)

MPG.PuRe

84.

Journal Article

Sandoval-Ibanez, O.; Rolo, D.; Ghandour, R.; Hertle, A. P.; Armarego-Marriott, T.; Sampathkumar, A.; Zoschke, R.; Bock, R.: De-etiolation-induced protein 1 (DEIP1) mediates assembly of the cytochrome b6f complex in Arabidopsis. Nature Communications 13 (1), 4045 (2022)

MPG.PuRe

85.

Journal Article

Alshareef, N. O.; Otterbach, S. L.; Allu, A. D.; Woo, Y. H.; de Werk, T.; Kamranfar, I.; Mueller-Roeber, B.; Tester, M.; Balazadeh, S.; Schmöckel, S. M.: NAC transcription factors ATAF1 and ANAC055 affect the heat stress response in Arabidopsis. Scientific Reports 12, 11264 (2022)

MPG.PuRe

86.

Journal Article

Dong, Y.; Wu, M.; Zhang, Q.; Fu, J.; Loiacono, F.V.; Yang, Y.; Wang, Z.; Li, S.; Chang, L.; Bock, R. et al.; Zhang, J.: Control of a sap-sucking insect pest by plastid-mediated RNA interference. Molecular Plant 15 (7), pp. 1176 - 1191 (2022)

MPG.PuRe

87.

Journal Article

Hamon-Josse, M.; Villaecija-Aguilar, J.; Ljung, K.; Leyser, O.; Gutjahr, C.; Bennett, T.: KAI2 regulates seedling development by mediating light-induced remodelling of auxin transport. New Phytologist 235 (1), pp. 126 - 140 (2022)

MPG.PuRe

88.

Journal Article

Martinez Rivas, F.J.; Blanco-Portales, R.; Moyano, E.; Alseekh, S.; Caballero, J. L.; Schwab, W.; Fernie, A. R.; Muñoz-Blanco, J.; Molina-Hidalgo, F. J.: Strawberry fruit FanCXE1 carboxylesterase is involved in the catabolism of volatile esters during the ripening process. Horticulture Research 9, uhac095 (2022)

MPG.PuRe

89.

Journal Article

Sageman-Furnas, K.; Nurmi, M.; Contag, M.; Plötner, B.; Alseekh, S.; Wiszniewski, A.A.G.; Fernie, A. R.; Smith, L. M.; Laitinen, R. A.: A. thaliana Hybrids Develop Growth Abnormalities Through Integration of Stress, Hormone and Growth Signalling. Plant and Cell Physiology 63 (7), pp. 944 - 954 (2022)

MPG.PuRe

90.

Journal Article

Vyse, K.; Fischer, A.; Zajancauskaite, G.; Erban, A.; Kopka, J.; Balazadeh, S.; Zuther, E.: Co-expression networks of deacclimation-impaired transcription factor mutants identified complex regulation of the cold stress release response. Physiologia Plantarum 174 (4), e13746 (2022)

MPG.PuRe

91.

Journal Article

Vyse, K.; Schaarschmidt, S.; Erban, A.; Kopka, J.; Zuther, E.: Specific CBF transcription factors and cold-responsive genes fine-tune the early triggering response after acquisition of cold priming and memory. Physiologia Plantarum 174 (4), e13740 (2022)

MPG.PuRe

92.

Journal Article

Kariñho-Betancourt, E.; Carlson, D.; Hollister, J.; Fischer, A.; Greiner, S.; Johnson, M. T. J.: The evolution of multi-gene families and metabolic pathways in the evening primroses (Oenothera: Onagraceae): A comparative transcriptomics approach. PLoS One 17 (6), e0269307 (2022)

MPG.PuRe

93.

Journal Article

Batista-Silva, W.; de Oliveira; Carvalho, A.; Oliveira Martins, A.; Siqueira, J. A.; Rodrigues-Salvador, A.; Omena-Garcia, R. P.; Medeiros, D.B.; Peres, L. E. P.; Ribeiro, D. M. et al.; Zsögön, A.; Fernie, A. R.; Nunes-Nesi, A.; Araújo, W. L.: Reduced auxin signalling through the cyclophilin DIAGEOTROPICA impacts tomato fruit development and metabolism during ripening. Journal of Experimental Botany 73 (12), pp. 4113 - 4128 (2022)

MPG.PuRe

94.

Journal Article

Ralevski, A.; Apelt, F.; Olas, J.; Mueller-Roeber, B.; Rugarli, E.; Kragler, F.; Horvath, T.: Plant mitochondrial FMT and its mammalian homolog CLUH controls development and behavior in Arabidopsis and locomotion in mice. Cellular and Molecular Life Sciences 79 (6), 334 (2022)

MPG.PuRe

95.

Journal Article

Liu, Z.; Østerlund, I.; Ruhnow, F.; Cao, Y.; Huang, G.; Cai, W.; Zhang, J.; Liang, W.; Nikoloski, Z.; Persson, S. et al.; Zhang, D.: Fluorescent cytoskeletal markers reveal associations between the actin and microtubule cytoskeleton in rice cells. Development 149 (12), dev.200415 (2022)

MPG.PuRe

96.

Journal Article

Tabatabaei, I.; Alseekh, S.; Shahid, M.; Leniak, E.; Wagner, M.; Mahmoudi, H.; Thushar, S.; Fernie, A. R.; Murphy, K. M.; Schmöckel, S. M. et al.; Tester, M.; Mueller-Roeber, B.; Skirycz, A.; Balazadeh, S.: The diversity of quinoa morphological traits and seed metabolic composition. Scientific Data 9 (1), 323 (2022)

MPG.PuRe

97.

Journal Article

Salem, M.A.; El-Shiekh, R. A.; Fernie, A. R.; Alseekh, S.; Zayed, A.: Metabolomics-based profiling for quality assessment and revealing the impact of drying of Turmeric (Curcuma longa L.). Scientific Reports 12 (1), 10288 (2022)

MPG.PuRe

98.

Journal Article

Chen, B.; Maas, L.; Figueiredo, D.D.; Zhong, Y.; Reis, R.; Li, M.; Horstman, A.; Riksen, T.; Weemen, M.; Liu, H. et al.; Siemons, C.; Chen, S.; Angenent, G. C.; Boutilier, K.: BABY BOOM regulates early embryo and endosperm development. Proceedings of the National Academy of Sciences of the United States of America 119 (25), e2201761119 (2022)

MPG.PuRe

99.

Journal Article

Del-Saz, N.; Iglesias-Sanchez, A.; Alonso-Forn, D.; Lopez-Gomez, M.; Palma, F.; Clemente-Moreno, M.; Fernie, A. R.; Ribas-Carbo, M.; Florez-Sarasa, I.: The Lack of Alternative Oxidase 1a Restricts in vivo Respiratory Activity and Stress-Related Metabolism for Leaf Osmoprotection and Redox Balancing Under Sudden Acute Water and Salt Stress in Arabidopsis thaliana. FRONTIERS IN PLANT SCIENCE 13, 833113 (2022)

MPG.PuRe

100.

Journal Article

Yokoyama, R.; de Oliveira, M.V.V.; Takeda-Kimura, Y.; Ishihara, H.; Alseekh, S.; Arrivault, S.; Kukshal, V.; Jez, J.M.; Stitt, M.; Fernie, A. R. et al.; Maeda, H.A.: Point mutations that boost aromatic amino acid production and CO2 assimilation in plants. Science Advances 8 (23), eabo3416 (2022)

MPG.PuRe