Publications of the MPI | Max Planck Institute of Molecular Plant Physiology

Max Planck Institute of Molecular Plant Physiology

Journal Article (194)

51.

Journal Article

Barros, J. A. S.; Cavalcanti, J. H. F.; Pimentel, K. G.; Medeiros, D.B.; Silva, J. C. F.; Condori-Apfata, J. A.; Lapidot-Cohen, T.; Brotman, Y.; Nunes-Nesi, A.; Fernie, A. R. et al.; Avin-Wittenberg, T.; Araújo, W. L.: The Significance of WRKY45 Transcription Factor in Metabolic Adjustments During Dark-induced Leaf Senescence. Plant, Cell and Environment (9), pp. 2682 - 2695 (2022)

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52.

Journal Article

Borghi, M.; de Souza, L. P.; Tohge, T.; Mi, J.; Melandri, G.; Proost, S.; Martins, M.; Al-Babili, S.; Bouwmeester, H.; Fernie, A. R.: High-energy-level metabolism and transport occur at the transition from closed to open flowers. Plant Physiology 190 (1), pp. 319 - 339 (2022)

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53.

Journal Article

Golczyk, H.; Hřibová, E.; Doležel, J.; Cuadrado, Á.; Garbsch, F.; Greiner, S.; Janeczko, M.; Szklarczyk, M.; Masłyk, M.; Kubiński, K.: Migration of repetitive DNAs during evolution of the permanent translocation heterozygosity in the oyster plant (Tradescantia section Rhoeo). Chromosoma: Biology of the Nucleus 131, pp. 163 - 173 (2022)

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54.

Journal Article

Heinze, J.; Krumpholz, L.; Blaum, N.; Hoefgen, R.; Ogden, M.: Shoot herbivory by grasshoppers has stronger effects on root morphology than clipping. Plant Ecology 223, pp. 1069 - 1078 (2022)

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55.

Journal Article

Huß, S.; Judd, R. S.; Koper, K.; Maeda, H. A.; Nikoloski, Z.: An automated workflow that generates atom mappings for large-scale metabolic models and its application to Arabidopsis thaliana. The Plant Journal 111 (5), pp. 1486 - 1500 (2022)

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56.

Journal Article

Mbebi, A. J.; Breitler, J.-C.; Bordeaux, M.; Sulpice, R.; McHale, M.; Tong, H.; Toniutti, L.; Castillo, J. A.; Bertrand, B.; Nikoloski, Z.: A comparative analysis of genomic and phenomic predictions of growth-related traits in 3-way coffee hybrids. G3: Genes, Genomes, Genetics 12 (9), jkac170 (2022)

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57.

Journal Article

Medeiros, D.B.; Ishihara, H.; Guenther, M.; Rosado-Souza, L.; Fernie, A. R.; Stitt, M.; Arrivault, S.: 13CO2 Labelling Kinetics in Maize Reveal Impaired Efficiency of C4 Photosynthesis under Low Irradiance. Plant Physiology 190 (1), pp. 280 - 304 (2022)

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58.

Journal Article

Sampathkumar, A.; Meyerowitz, E.: Cellulose synthase complexes-microtubules interaction hinders mechano-response. Nature Plants 8, pp. 988 - 989 (2022)

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59.

Journal Article

Tiozon, R.J.N.; Sartagoda, K. J. D.; Serrano, L. M. N.; Fernie, A. R.; Sreenivasulu, N.: Metabolomics based inferences to unravel phenolic compound diversity in cereals and its implications for human gut health. Trends in Food Science & Technology 127, pp. 14 - 25 (2022)

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60.

Journal Article

Wang, C.-W.; Michelle Wong, J.-W.; Yeh, S.-S.; Hsieh, Y. E.; Tseng, C.-H.; Yang, S.-H.; Tang, S.-L.: Soil Bacterial Community May Offer Solutions for Ginger Cultivation. Microbiology Spectrum 10 (5), e01803-22 (2022)

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61.

Journal Article

Yan, S.; Liu, Q.; Li, W.; Yan, J.; Fernie, A. R.: Raffinose Family Oligosaccharides: Crucial Regulators of Plant Development and Stress Responses. Critical Reviews in Plant Sciences 41 (4), pp. 286 - 303 (2022)

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62.

Journal Article

Zhang, Y.; Fernie, A. R.: Dynamically regulating metabolic fluxes with synthetic metabolons. Trends in Biotechnology 40 (9), pp. 1019 - 1020 (2022)

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63.

Journal Article

Zhou, J.; Liu, C.; Chen, Q.; Liu, L.; Niu, S.; Chen, R.; Li, K.; Sun, Y.; Shi, Y.; Yang, C. et al.; Shen, S.; Li, Y.; Xing, J.; Yuan, H.; Liu, X.; Fang, C.; Fernie, A. R.; Luo, J.: Integration of rhythmic metabolome and transcriptome provides insights into the transmission of rhythmic fluctuations and temporal diversity of metabolism in rice. SCIENCE CHINA-LIFE SCIENCES 65, pp. 1764 - 1810 (2022)

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64.

Journal Article

Zhu, F.; Jadhav, S. S.; Tohge, T.; Salem, M. A.; Li, J. M.; Giovannoni, J. J.; Cheng, Y.; Alseekh, S.; Fernie, A. R.: A comparative transcriptomics and eQTL approach identifies SlWD40 as a tomato fruit ripening regulator. Plant Physiology 190 (1), pp. 250 - 266 (2022)

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65.

Journal Article

Zhang, J.; Chi, X.; Zhong, J.; Fernie, A. R.; Alseekh, S.; Huang, L.; Qian, D.: Extensive nrDNA ITS polymorphism in Lycium: Non-concerted evolution and the identification of pseudogenes. Frontiers in Plant Science 13, 984579 (2022)

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66.

Journal Article

Naves, E. R.; Scossa, F.; Araújo, W. L.; Nunes-Nesi, A.; Fernie, A. R.; Zsögön, A.: Heterosis for capsacinoids accumulation in chili pepper hybrids is dependent on parent-of-origin effect. Scientific Reports 12 (1), 14450 (2022)

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67.

Journal Article

Schneider, R.; Ehrhardt, D. W.; Meyerowitz, E. M.; Sampathkumar, A.: Tethering of cellulose synthase to microtubules dampens mechano-induced cytoskeletal organization in Arabidopsis pavement cells. Nature Plants 8, pp. 1064 - 1073 (2022)

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68.

Journal Article

Matz, T.; Wang, Y.; Kulshreshtha, R.; Sampathkumar, A.; Nikoloski, Z.: Topological properties accurately predict cell division events and organization of shoot apical meristem in Arabidopsis thaliana. Development 149 (16), dev201024 (2022)

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69.

Journal Article

Gui, S.; Wei, W.; Jiang, C.; Luo, J.; Chen, L.; Wu, S.; Li, W.; Wang, Y.; Li, S.; Yang, N. et al.; Li, Q.; Fernie, A. R.; Yan, J.: A pan-Zea genome map for enhancing maize improvement. Genome Biology: Biology for the Post-Genomic Era 23 (1), 178 (2022)

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70.

Journal Article

Joo, J.; Kim, M.; Cho, Y.; Fernie, A. R.; Sung, J.: Transcriptional Comparison of Genes Associated with Photosynthesis, Photorespiration, and Photo-Assimilate Allocation and Metabolic Profiling of Rice Species. International Journal of Molecular Sciences 23 (16), 16 (2022)

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71.

Journal Article

Wang, Y.; Li, W.; Wang, L.; Yan, J.; Lu, G.; Yang, N.; Xu, J.; Wang, Y.; Gui, S.; Chen, G. et al.; Li, S.; Wu, C.; Guo, T.; Xiao, Y.; Warburton, M. L.; Fernie, A. R.; Dresselhaus, T.; Yan, J.: Three types of genes underlying the Gametophyte factor1 locus cause unilateral cross incompatibility in maize. Nature Communications 13 (1), 4498 (2022)

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72.

Journal Article

Feitosa-Araujo, E.; da Fonseca-Pereira, P.; Pena, M.; Lana-Costa, J.; Coelho, D.; Silva, F.; Medeiros, D.B.; Linka, N.; Araujo, W.; Weber, A. et al.; Fernie, A. R.; Nunes-Nesi, A.: Mitochondrial and peroxisomal NAD(+) uptake are important for improved photosynthesis and seed yield under elevated CO2 concentrations. The Plant Journal 111 (3), pp. 713 - 730 (2022)

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73.

Journal Article

Ishihara, H.; Alseekh, S.; Feil, R.; Perera, P.; George, G. M.; Niedzwiecki, P.; Arrivault, S.; Zeeman, S. C.; Fernie, A. R.; Lunn, J. E. et al.; Smith, A. M.; Stitt, M.: Rising rates of starch degradation during daytime and trehalose 6-phosphate optimize carbon availability. Plant Physiology 189 (4), pp. 1976 - 2000 (2022)

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74.

Journal Article

Moraes, T. A.; Mengin, V.; Peixoto, B.; Encke, B.; Krohn, N.; Höhne, M.; Krause, U.; Stitt, M.: The circadian clock mutant lhy cca1 elf3 paces starch mobilization to dawn despite severely disrupted circadian clock function. Plant Physiology 189, pp. 2332 - 2356 (2022)

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75.

Journal Article

Otero, S.; Gildea, I.; Roszak, P.; Lu, Y.; Di Vittori, V.; Bourdon, M.; Kalmbach, L.; Blob, B.; Heo, J.-o.; Peruzzo, F. et al.; Laux, T.; Fernie, A. R.; Tavares, H.; Helariutta, Y.: A root phloem pole cell atlas reveals common transcriptional states in protophloem-adjacent cells. Nature Plants 8, pp. 954 - 970 (2022)

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76.

Journal Article

Hashemi, S.; Razaghi-Moghadam, Z.; Laitinen, R.A.E.; Nikoloski, Z.: Relative flux trade-offs and optimization of metabolic network functionalities. Computational and Structural Biotechnology Journal 20, pp. 3963 - 3971 (2022)

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77.

Journal Article

Schulz-Mirbach, H.; Mueller, A.; Wu, T.; Pfister, P.; Aslan, S.; Schada von Borzyskowski, L.; Erb , T.J.; Bar-Even, A.; Lindner, S. N.: On the flexibility of the cellular amination network in E. coli. eLife 11, e77492 (2022)

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78.

Journal Article

Chew, Y. H.; Seaton, D. D.; Mengin, V.; Flis, A.; Mugford, S. T.; George, G. M.; Moulin, M.; Hume, A.; Zeeman, S. C.; Fitzpatrick, T. B. et al.; Smith, A. M.; Stitt, M.; Millar, A. J.: The Arabidopsis Framework Model version 2 predicts the organism-level effects of circadian clock gene mis-regulation. in silico Plants 4 (2), diac010 (2022)

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79.

Journal Article

Martinez Rivas, F.J.; Blanco-Portales, R.; Molina-Hidalgo, F.; Caballero, J.; de Souza, L. P.; Alseekh, S.; Fernie, A. R.; Munoz-Blanco, J.; Rodriguez-Franco, A.: Azacytidine arrests ripening in cultivated strawberry (Fragaria x ananassa) by repressing key genes and altering hormone contents. BMC Plant Biology 22 (1), 278 (2022)

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80.

Journal Article

Mulugeta Aneley, G.; Haas, M.; Koehl, K. I.: LIDAR-Based Phenotyping for Drought Response and Drought Tolerance in Potato. Potato Research 66, pp. 1225 - 1256 (2022)

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81.

Journal Article

Wei, S.; Li, X.; Lu, Z.; Zhang, H.; Ye, X.; Zhou, Y.; Li, J.; Yan, Y.; Pei, H.; Duan, F. et al.; Wang, D.; Chen, S.; Wang, P.; Zhang, C.; Shang, L.; Zhou, Y.; Yan, P.; Zhao, M.; Huang, J.; Bock, R.; Qian, Q.; Zhou, W.: A transcriptional regulator that boosts grain yields and shortens the growth duration of rice. Science 377, 6604 (2022)

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82.

Journal Article

Lopez, L. S.; Völkner, C.; Day, P. M.; Lewis, C. M.; Lewis, C. L.; Schneider, D.; Correa Galvis, V.; Cruz, J. A.; Armbruster, U.; Kramer, D. M. et al.; Kunz, H.-H.: The Arabidopsis T-DNA mutant SALK_008491 carries a 14-kb deletion on chromosome 3 that provides rare insights into the plant response to dynamic light stress. Plant Direct 6 (7), e429 (2022)

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83.

Journal Article

Palos, K.; Dittrich, A.; Yu, L.; Brock, J.; Railey, C.; Wu, H.; Sokolowska, E.; Skirycz, A.; Hsu, P.; Gregory, B. et al.; Lyons, E.; Beilstein, M.; Nelson, A.: Identification and functional annotation of long intergenic non-coding RNAs in Brassicaceae. The Plant Cell 34 (9), pp. 3233 - 3260 (2022)

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84.

Journal Article

Pereira, A. M.; Martins, A. O.; Batista-Silva, W.; Condori-Apfata, J. A.; Nascimento, V. L.; Silva, V. F.; Oliveira, L. A.; Medeiros, D.B.; Martins, S. C. V.; Fernie, A. R. et al.; Nunes-Nesi, A.; Araújo, W. L.: Elevated carbon assimilation and metabolic reprogramming in tomato high pigment mutants support the increased production of pigments. Plant Cell Reports 41, pp. 1907 - 1929 (2022)

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85.

Journal Article

Sandoval-Ibanez, O.; Rolo, D.; Ghandour, R.; Hertle, A. P.; Armarego-Marriott, T.; Sampathkumar, A.; Zoschke, R.; Bock, R.: De-etiolation-induced protein 1 (DEIP1) mediates assembly of the cytochrome b6f complex in Arabidopsis. Nature Communications 13 (1), 4045 (2022)

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86.

Journal Article

Alshareef, N. O.; Otterbach, S. L.; Allu, A. D.; Woo, Y. H.; de Werk, T.; Kamranfar, I.; Mueller-Roeber, B.; Tester, M.; Balazadeh, S.; Schmöckel, S. M.: NAC transcription factors ATAF1 and ANAC055 affect the heat stress response in Arabidopsis. Scientific Reports 12, 11264 (2022)

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87.

Journal Article

Dong, Y.; Wu, M.; Zhang, Q.; Fu, J.; Loiacono, F.V.; Yang, Y.; Wang, Z.; Li, S.; Chang, L.; Bock, R. et al.; Zhang, J.: Control of a sap-sucking insect pest by plastid-mediated RNA interference. Molecular Plant 15 (7), pp. 1176 - 1191 (2022)

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88.

Journal Article

Hamon-Josse, M.; Villaecija-Aguilar, J.; Ljung, K.; Leyser, O.; Gutjahr, C.; Bennett, T.: KAI2 regulates seedling development by mediating light-induced remodelling of auxin transport. New Phytologist 235 (1), pp. 126 - 140 (2022)

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89.

Journal Article

Martinez Rivas, F.J.; Blanco-Portales, R.; Moyano, E.; Alseekh, S.; Caballero, J. L.; Schwab, W.; Fernie, A. R.; Muñoz-Blanco, J.; Molina-Hidalgo, F. J.: Strawberry fruit FanCXE1 carboxylesterase is involved in the catabolism of volatile esters during the ripening process. Horticulture Research 9, uhac095 (2022)

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90.

Journal Article

Sageman-Furnas, K.; Nurmi, M.; Contag, M.; Plötner, B.; Alseekh, S.; Wiszniewski, A.A.G.; Fernie, A. R.; Smith, L. M.; Laitinen, R. A.: A. thaliana Hybrids Develop Growth Abnormalities Through Integration of Stress, Hormone and Growth Signalling. Plant and Cell Physiology 63 (7), pp. 944 - 954 (2022)

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91.

Journal Article

Vyse, K.; Fischer, A.; Zajancauskaite, G.; Erban, A.; Kopka, J.; Balazadeh, S.; Zuther, E.: Co-expression networks of deacclimation-impaired transcription factor mutants identified complex regulation of the cold stress release response. Physiologia Plantarum 174 (4), e13746 (2022)

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92.

Journal Article

Vyse, K.; Schaarschmidt, S.; Erban, A.; Kopka, J.; Zuther, E.: Specific CBF transcription factors and cold-responsive genes fine-tune the early triggering response after acquisition of cold priming and memory. Physiologia Plantarum 174 (4), e13740 (2022)

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93.

Journal Article

Kariñho-Betancourt, E.; Carlson, D.; Hollister, J.; Fischer, A.; Greiner, S.; Johnson, M. T. J.: The evolution of multi-gene families and metabolic pathways in the evening primroses (Oenothera: Onagraceae): A comparative transcriptomics approach. PLoS One 17 (6), e0269307 (2022)

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94.

Journal Article

Batista-Silva, W.; de Oliveira; Carvalho, A.; Oliveira Martins, A.; Siqueira, J. A.; Rodrigues-Salvador, A.; Omena-Garcia, R. P.; Medeiros, D.B.; Peres, L. E. P.; Ribeiro, D. M. et al.; Zsögön, A.; Fernie, A. R.; Nunes-Nesi, A.; Araújo, W. L.: Reduced auxin signalling through the cyclophilin DIAGEOTROPICA impacts tomato fruit development and metabolism during ripening. Journal of Experimental Botany 73 (12), pp. 4113 - 4128 (2022)

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95.

Journal Article

Ralevski, A.; Apelt, F.; Olas, J.; Mueller-Roeber, B.; Rugarli, E.; Kragler, F.; Horvath, T.: Plant mitochondrial FMT and its mammalian homolog CLUH controls development and behavior in Arabidopsis and locomotion in mice. Cellular and Molecular Life Sciences 79 (6), 334 (2022)

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96.

Journal Article

Liu, Z.; Østerlund, I.; Ruhnow, F.; Cao, Y.; Huang, G.; Cai, W.; Zhang, J.; Liang, W.; Nikoloski, Z.; Persson, S. et al.; Zhang, D.: Fluorescent cytoskeletal markers reveal associations between the actin and microtubule cytoskeleton in rice cells. Development 149 (12), dev.200415 (2022)

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97.

Journal Article

Tabatabaei, I.; Alseekh, S.; Shahid, M.; Leniak, E.; Wagner, M.; Mahmoudi, H.; Thushar, S.; Fernie, A. R.; Murphy, K. M.; Schmöckel, S. M. et al.; Tester, M.; Mueller-Roeber, B.; Skirycz, A.; Balazadeh, S.: The diversity of quinoa morphological traits and seed metabolic composition. Scientific Data 9 (1), 323 (2022)

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98.

Journal Article

Salem, M.A.; El-Shiekh, R. A.; Fernie, A. R.; Alseekh, S.; Zayed, A.: Metabolomics-based profiling for quality assessment and revealing the impact of drying of Turmeric (Curcuma longa L.). Scientific Reports 12 (1), 10288 (2022)

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99.

Journal Article

Chen, B.; Maas, L.; Figueiredo, D.D.; Zhong, Y.; Reis, R.; Li, M.; Horstman, A.; Riksen, T.; Weemen, M.; Liu, H. et al.; Siemons, C.; Chen, S.; Angenent, G. C.; Boutilier, K.: BABY BOOM regulates early embryo and endosperm development. Proceedings of the National Academy of Sciences of the United States of America 119 (25), e2201761119 (2022)

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100.

Journal Article

Del-Saz, N.; Iglesias-Sanchez, A.; Alonso-Forn, D.; Lopez-Gomez, M.; Palma, F.; Clemente-Moreno, M.; Fernie, A. R.; Ribas-Carbo, M.; Florez-Sarasa, I.: The Lack of Alternative Oxidase 1a Restricts in vivo Respiratory Activity and Stress-Related Metabolism for Leaf Osmoprotection and Redox Balancing Under Sudden Acute Water and Salt Stress in Arabidopsis thaliana. FRONTIERS IN PLANT SCIENCE 13, 833113 (2022)

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