Journal Article (162)

51.
Journal Article
Baetz, U.; Eisenach, C.; Tohge, T.; Martinoia, E.; De Angeli, A.: Vacuolar chloride fluxes impact ion content and distribution during early salinity stress. Plant Physiology 172 (2), pp. 1167 - 1181 (2016)
52.
Journal Article
Basler, G.; Küken, A.; Fernie, A. R.; Nikoloski, Z.: Photorespiratory Bypasses Lead to Increased Growth in Arabidopsis thaliana: Are Predictions Consistent with Experimental Evidence? Frontiers in Bioengineering and Biotechnology 4, 31 (2016)
53.
Journal Article
Basler, G.; Nikoloski, Z.; Larhlimi, A.; Barabasi, A.-L.; Liu, Y.-Y.: Control of fluxes in metabolic networks. Genome Research 26 (7), pp. 956 - 968 (2016)
54.
Journal Article
Beleggia, R.; Rau, D.; Laido, G.; Platani, C.; Nigro, F.; Fragasso, M.; De Vita, P.; Scossa, F.; Fernie, A. R.; Nikoloski, Z. et al.; Papa, R.: Evolutionary Metabolomics Reveals Domestication-Associated Changes in Tetraploid Wheat Kernels. Molecular Biology and Evolution 33 (7), pp. 1740 - 1753 (2016)
55.
Journal Article
Brzezinka, K.; Altmann, S.; Czesnick, H.; Nicolas, P.; Gorka, M.; Benke, E.; Kabelitz, T.; Jähne, F.; Graf, A.; Kappel, C. et al.; Bäurle, I.: Arabidopsis FORGETTER1 mediates stress-induced chromatin memory through nucleosome remodeling. eLife 5 (September), e18246 (2016)
56.
Journal Article
Bustamante, C. A.; Monti, L. L.; Gabilondo, J.; Scossa, F.; Valentini, G.; Budde, C. O.; Lara, M. V.; Fernie, A. R.; Drincovich, M. F.: Differential Metabolic Rearrangements after Cold Storage Are Correlated with Chilling Injury Resistance of Peach Fruits. Frontiers in Plant Science 7, 1478 (2016)
57.
Journal Article
Coleto, I.; Trenas, A. T.; Erban, A.; Kopka, J.; Pineda, M.; Alamillo, J. M.: Functional specialization of one copy of glutamine phosphoribosyl pyrophosphate amidotransferase in ureide production from symbiotically fixed nitrogen in Phaseolus vulgaris. Plant, Cell and Environment 39 (8), pp. 1767 - 1779 (2016)
58.
Journal Article
Coluccio Leskow, C.; Kamenetzky, L.; Guadalupe Dominguez, P.; Diaz Zirpolo, J. A.; Obata, T.; Costa, H.; Marti, M.; Taboga, O.; Keurentjes, J.; Sulpice, R. et al.; Ishihara, H.; Stitt, M.; Fernie, A. R.; Carrari, F.: Allelic differences in a vacuolar invertase affect Arabidopsis growth at early plant development. Journal of Experimental Botany 67 (14), pp. 4091 - 4103 (2016)
59.
Journal Article
Czedik-Eysenberg, A.; Arrivault, S.; Lohse, M.A.; Feil, R.; Krohn, N.; Encke, B.; Nunes-Nesi, A.; Fernie, A. R.; Lunn, J. E.; Sulpice, R. et al.; Stitt, M.: The interplay between carbon availability and growth in different zones of the growing maize leaf. Plant Physiology 172 (2), pp. 943 - 967 (2016)
60.
Journal Article
Daloso, D. M.; dos Anjos, L.; Fernie, A. R.: Roles of sucrose in guard cell regulation. New Phytologist 211 (3), pp. 809 - 818 (2016)
61.
Journal Article
Davidia, D.; Noorb, E.; Liebermeisterc, W.; Bar-Even, A.; Flamholze, A.; Tummlerf, K.; Barenholza, U.; Goldenfelda, M.; Shlomig, T.; Miloa, R.: Global characterization of in vivo enzyme catalytic rates and their correspondence to in vitro k cat measurements. Proceedings of the National Academy of Sciences of the United States of America 113 (12), pp. 3401 - 3406 (2016)
62.
Journal Article
Davis, G. A.; Kanazawa, A.; Schöttler, M. A.; Kohzuma, K.; Froehlich, J. E.; Rutherford, A. W.; Satoh-Cruz, M.; Minhas, D.; Tietz, S.; Dhingra, A. et al.; Kramer, D. M.: Limitations to photosynthesis by proton motive force-induced photosystem II photodamage. eLife 5, e16921 (2016)
63.
Journal Article
Del-Saz, N. F.; Florez-Sarasa, I. D.; Clemente-Moreno, M. J.; Mhadhbi, H.; Flexas, J.; Fernie, A. R.; Ribas-Carbó, M.: Salinity tolerance is related to cyanide-resistant alternative respiration in Medicago truncatula under sudden severe stress. Plant, Cell and Environment 39 (11), pp. 2361 - 2369 (2016)
64.
Journal Article
Dyson, B. C.; Miller, M. A.E.; Feil, R.; Rattray, N.; Bowsher, C. G.; Goodacre, R.; Lunn, J. E.; Johnson, G. N.: FUM2, a cytosolic fumarase, is essential for acclimation to low temperature in arabidopsis thaliana. Plant Physiology 172 (1), pp. 118 - 127 (2016)
65.
Journal Article
Edlich-Muth, C.; Muraya, M. M.; Altmann, T.; Selbig, J.: Phenomic prediction of maize hybrids. Biosystems 146, pp. 102 - 109 (2016)
66.
Journal Article
Eggert, E.; Obata, T.; Gerstenberger, A.; Gier, K.; Brandt, T.; Fernie, A. R.; Schulze, W. X.; Kühn, C.: A sucrose transporter-interacting protein disulphide isomerase affects redox homeostasis and links sucrose partitioning with abiotic stress tolerance. Plant, Cell and Environment 39 (6), pp. 1366 - 1380 (2016)
67.
Journal Article
Eloundou-Mbebi, J. M. O.; Küken, A.; Omranian, N.; Kleessen, S.; Neigenfind, J.; Basler, G.; Nikoloski, Z.: A network property necessary for concentration robustness. Nature Communications 7, 13255 (2016)
68.
Journal Article
Endler, A.; Schneider, R.; Kesten, C.; Lampugnani, E. R.; Persson, S.: The cellulose synthase companion proteins act non-redundantly with CELLULOSE SYNTHASE INTERACTING1/POM2 and CELLULOSE SYNTHASE 6. Plant Signaling & Behavior 11 (4), e1135281 (2016)
69.
Journal Article
Estevez, S.; Nikoloski, Z.: Metabolic Network Constrains Gene Regulation of C4 Photosynthesis: The Case of Maize. Plant & Cell Physiology 57 (5), pp. 933 - 943 (2016)
70.
Journal Article
Feike, D.; Seung, D.; Graf, A.; Bischof, S.; Ellick, T.; Coiro, M.; Soyk, S.; Eicke, S.; Mettler-Altmann, T.; Lu, K. J. et al.; Trick, M.; Zeeman, S. C.; Smith, A. M.: The Starch Granule-Associated Protein EARLY STARVATION1 Is Required for the Control of Starch Degradation in Arabidopsis thaliana Leaves. Plant Cell 28 (6), pp. 1472 - 1489 (2016)
71.
Journal Article
Figueroa, C. M.; Feil, R.; Ishihara, H.; Watanabe, M.; Kolling, K.; Krause, U.; Höhne, M.; Encke, B.; Plaxton, W. C.; Zeeman, S. C. et al.; Li, Z.; Schulze, W. X.; Hoefgen, R.; Stitt, M.; Lunn, J. E.: Trehalose 6-phosphate coordinates organic and amino acid metabolism with carbon availability. The Plant Journal 85 (3), pp. 410 - 423 (2016)
72.
Journal Article
Figueroa, C. M.; Lunn, J. E.: A tale of two sugars: Trehalose 6-phosphate and sucrose. Plant Physiology 172 (1), pp. 7 - 27 (2016)
73.
Journal Article
Flis, A.; Sulpice, R.; Seaton, D. D.; Ivakov, A.; Liput, M.; Abel, C.; Millar, A. J.; Stitt, M.: Photoperiod-dependent changes in the phase of core clock transcripts and global transcriptional outputs at dawn and dusk in Arabidopsis. Plant, Cell and Environment 39 (9), pp. 1955 - 1981 (2016)
74.
Journal Article
Florez-Sarasa, I. D.; Noguchi, K.; Araujo, W.; Garcia-Nogales, A.; Fernie, A. R.; Flexas, J.; Ribas-Carbo, M.: Impaired cyclic electron flow around Photosystem I disturbs high-light respiratory metabolism. Plant Physiology 172 (4), pp. 2176 - 2189 (2016)
75.
Journal Article
Florez-Sarasa, I. D.; Ribas-Carbo, M.; Fernandez Del-Saz, N.; Schwahn, K.; Nikoloski, Z.; Fernie, A. R.; Flexas, J.: Unravelling the invivo regulation and metabolic role of the alternative oxidase pathway in C-3 species under photoinhibitory conditions. New Phytologist 212 (1), pp. 66 - 79 (2016)
76.
Journal Article
Fuentes, P.; Zhou, F.; Erban, A.; Karcher, D.; Kopka, J.; Bock, R.: A new synthetic biology approach allows transfer of an entire metabolic pathway from a medicinal plant to a biomass crop. eLife 5, e13664 (2016)
77.
Journal Article
Gal, A.; Wirth, R.; Kopka, J.; Fratzl, P.; Faivre, D.; Scheffel, A.: Macromolecular recognition directs calcium ions to coccolith mineralization sites. Science 353 (6299), pp. 590 - 593 (2016)
78.
Journal Article
Galili, G.; Amir, R.; Fernie, A. R.: The Regulation of Essential Amino Acid Synthesis and Accumulation in Plants. Annual Review of Plant Biology, pp. 153 - 178 (2016)
79.
Journal Article
Garcia, V.; Bres, C.; Just, D.; Fernandez, L.; Tai, F. W. J.; Mauxion, J.-P.; Le Paslier, M.-C.; Bérard, A.; Brunel, D.; Aoki, K. et al.; Alseekh, S.; Fernie, A. R.; Fraser, P. D.; Rothan, &. C.: Rapid identification of causal mutations in tomato EMS populations via mapping-by-sequencing. Nature Protocols 11, pp. 2401 - 2418 (2016)
80.
Journal Article
Gottschamel, J.; Loessl, A.; Ruf, S.; Wang, Y.; Skaugen, M.; Bock, R.; Clarke, J. L.: Production of dengue virus envelope protein domain III-based antigens in tobacco chloroplasts using inducible and constitutive expression systems. Plant Molecular Biology 91 (4-5), pp. 497 - 512 (2016)
81.
Journal Article
Gruel, J.; Landrein, B.; Tarr, P.; Schuster, C.; Refahi, Y.; Sampathkumar, A.; Hamant, O.; Meyerowitz, E. M.; Jönsson, H.: An epidermis-driven mechanism positions and scales stem cell niches in plants. Science Advances 2, e1500989 (2016)
82.
Journal Article
Hameed, M. W.: Hypoxia up-regulates mitochondrial genome-encoded transcripts in Arabidopsis roots. Genes and Genetic Systems 90 (6), pp. 325 - 334 (2016)
83.
Journal Article
Harsman, A.; Schock, A.; Hemmis, B.; Wahl, V.; Jeshen, I.; Bartsch, P.; Schlereth, A.; Pertl-Obermeyer, H.; Goetze, T.A.; Soll, J. et al.; Philippar, K.; Wagner, R.: OEP40, a regulated glucose-permeable β-barrel solute channel in the chloroplast outer envelope membrane. Journal of Biological Chemistry 291 (34), pp. 17848 - 17860 (2016)
84.
Journal Article
Hilker, M.; Schwachtje, J.; Baier, M.; Balazadeh, S.; Bäurle, I.; Geiselhardt, S.; Hincha, D. K.; Kunze, R.; Mueller-Roeber, B.; Rillig, M. C. et al.; Rolff, J.; Romeis, T.; Schmülling, T.; Steppuhn, A.; van Dongen, J.; Whitcomb, S. J.; Wurst, S.; Zuther, E.; Kopka, J.: Priming and memory of stress responses in organisms lacking a nervous system. Biological Reviews 91 (4), pp. 1118 - 1133 (2016)
85.
Journal Article
Hoefler, S.; Lorenz, C.; Busch, T.; Brinkkoetter, M.; Tohge, T.; Fernie, A. R.; Braun, H.-P.; Hildebrandt, T. M.: Dealing with the sulfur part of cysteine: four enzymatic steps degrade l-cysteine to pyruvate and thiosulfate in Arabidopsis mitochondria. Physiologia Plantarum 157 (3), pp. 352 - 366 (2016)
86.
Journal Article
Hood, M. A.; Leemreize, H.; Scheffel, A.; Faivrea, D.: Lattice distortions in coccolith calcite crystals originate from occlusion of biomacromolecules. Journal of Structural Biology 162 (2), pp. 147 - 154 (2016)
87.
Journal Article
Iñigo, S.; Durand, A.N.; Ritter, A.; Le Gall, S.; Termathe, M.; Klassen, R.; Tohge, T.; De Coninck, B.; Van Leene, J.; De Clercq, R. et al.; Cammue, B.P.A.; Fernie, A. R.; Gevaert, K.; De Jaeger, G.; Leidel, S.A.; Schaffrath, R.; Van Lijsebettens, M.; Pauwels, L.; Goossens, A.: Glutaredoxin GRXS17 associates with the cytosolic iron-sulfur cluster assembly pathway. Plant Physiology 172 (2), pp. 858 - 873 (2016)
88.
Journal Article
Ishihara, H.; Tohge, T.; Viehover, P.; Fernie, A. R.; Weisshaar, B.; Stracke, R.: Natural variation in flavonol accumulation in Arabidopsis is determined by the flavonol glucosyltransferase BGLU6. Journal of Experimental Botany 67 (5), pp. 1505 - 1517 (2016)
89.
Journal Article
Jargosch, M.; Kröger, S.; Gralinska, E.; Klotz, U.; Fang, Z.; Chen, W.; Leser, U.; Selbig, J.; Groth, D.; Baumgrass, R.: Data integration for identification of important transcription factors of STAT6-mediated cell fate decisions. Genetics and Molecular Research 15 (2), gmr8493 (2016)
90.
Journal Article
Jorge, T. F.; Rodrigues, J. A.; Caldana, C.; Schmidt, R.; van Dongen, J. T.; Thomas-Oates, J.; Antonio, C.: Mass spectrometry-based plant metabolomics: Metabolite responses to abiotic stress. Mass Spectrometry Reviews 35 (5), pp. 620 - 649 (2016)
91.
Journal Article
Kelly, A. A.; Kalisch, B.; Hoelzl, G.; Schulze, S.; Thiele, J.; Melzer, M.; Roston, R. L.; Benning, C.; Doermann, P.: Synthesis and transfer of galactolipids in the chloroplast envelope membranes of Arabidopsis thaliana. Proceedings of the National Academy of Sciences of the United States of America 113 (38), pp. 10714 - 10719 (2016)
92.
Journal Article
Kerchev, P.; Waszczak, C.; Lewandowska, A.; Willems, P.; Shapiguzov, A.; Li, Z.; Alseekh, S.; Mühlenbock, P.; Hoeberichts, F.A.; Huang, J. et al.; Van Der Kelen, K.; Kangasjärvi, J.; Fernie, A. R.; De Smet, R.; Van de Peer, Y.; Messens, J.; Van Breusegem, F.: Lack of GLYCOLATE OXIDASE1, but not GLYCOLATE OXIDASE2, attenuates the photorespiratory phenotype of CATALASE2-deficient Arabidopsis. Plant Physiology 171 (3), pp. 1704 - 1719 (2016)
93.
Journal Article
Koelln, O. T.; Junqueira Franco, H. C.; Ferreira, D. A.; Vargas, V. P.; de Quassi Castro, S. A.; Cantarella, H.; Caldana, C.; Ocheuze Trivelin, P. C.: Root extracts of Bracchiaria humidicola and Saccharum spontaneum to increase N use by sugarcane. SCIENTIA AGRICOLA 73 (1), pp. 34 - 42 (2016)
94.
Journal Article
Korkuc, P.; Walther, D.: The Identification of Cis-Regulatory Sequence Motifs in Gene Promoters Based on SNP Information. PLANT SYNTHETIC PROMOTERS: METHODS AND PROTOCOLS, pp. 31 - 47 (2016)
95.
Journal Article
Kudo, M.; Kidokoro, S.; Yoshida, T.; Mizoi, J.; Todaka, D.; Fernie, A. R.; Shinozaki, K.; Yamaguchi-Shinozaki, K.: Double overexpression of DREB and PIF transcription factors improves drought stress tolerance and cell elongation in transgenic plants. Plant Biotechnology Journal (accepted)
96.
Journal Article
Lee, Y. P.; Funk, C.; Erban, A.; Kopka, J.; Koehl, K. I.; Zuther, E.; Hincha, D. K.: Salt stress responses in a geographically diverse collection of Eutrema/Thellungiella spp. accessions. Functional Plant Biology 43, pp. 590 - 606 (2016)
97.
Journal Article
Li, L.; Kubiszewski-Jakubiak, S.; Radomiljac, J.; Wang, Y.; Law, S. R.; Keech, O.; Narsai, R.; Berkowitz, O.; Duncan, O.; Murcha, M. W. et al.; Whelan, J.: Characterization of a novel beta-barrel protein (AtOM47) from the mitochondrial outer membrane of Arabidopsis thaliana. Journal of Experimental Botany 67 (21), pp. 6061 - 6075 (2016)
98.
Journal Article
Lis, M.; Walther, D.: The orientation of transcription factor binding site motifs in gene promoter regions: does it matter? BMC Genomics 17, 185 (2016)
99.
Journal Article
Liu, Z.; Alseekh, S.; Brotman, Y.; Zheng, Y.; Fei, Z.; Tieman, D.; Giovannoni, J.; Fernie, A. R.; Klee, H.: Identification of a Solanum pennellii Chromosome 4 Fruit Flavor and Nutritional Quality-Associated Metabolite QTL. Frontiers in Plant Science 7, 1671 (2016)
100.
Journal Article
Liu, Z.; Omranian, N.; Neumetzler, L.; Wang, T.; Herter, T.; Usadel, B.; Demura, T.; Giavalisco, P.; Nikoloski, Z.; Persson, S.: A transcriptional and metabolic framework for secondary wall formation in arabidopsis. Plant Physiology 172 (2), pp. 1334 - 1351 (2016)
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