Publications of the MPI | Max Planck Institute of Molecular Plant Physiology

Max Planck Institute of Molecular Plant Physiology

Journal Article (183)

51.

Journal Article

Toepfer, N.; Caldana, C.; Grimbs, S.; Willmitzer, L.; Fernie, A. R.; Nikoloski, Z.: Integration of Genome-Scale Modeling and Transcript Profiling Reveals Metabolic Pathways Underlying Light and Temperature Acclimation in Arabidopsis. The Plant Cell 25 (4), pp. 1197 - 1211 (2013)

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52.

Journal Article

Nordstrom, K.; Albani, M.; James, G.; Gutjahr, C.; Hartwig, B.; Turck, F.; Paszkowski, U.; Coupland, G.; Schneeberger, K.: Mutation identification by direct comparison of whole-genome sequencing data from mutant and wild-type individuals using k-mers. Nature Biotechnology 31 (4), pp. 325 - 330 (2013)

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53.

Journal Article

Bar-Even, A.: Does acetogenesis really require especially low reduction potential? Biochimica et Biophysica Acta-Bioenergetics 1827 (3), pp. 395 - 400 (2013)

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54.

Journal Article

Hertle, A. P.; Blunder, T.; Wunder, T.; Pesaresi, P.; Pribil, M.; Armbruster, U.; Leister, D.: PGRL1 Is the Elusive Ferredoxin-Plastoquinone Reductase in Photosynthetic Cyclic Electron Flow. Molecular Cell 49 (3), pp. 511 - 523 (2013)

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55.

Journal Article

Araujo, W. L.; Trofimova, L.; Mkrtchyan, G.; Steinhauser, D.; Krall, L.; Graf, A.; Fernie, A. R.; Bunik, V. I.: On the role of the mitochondrial 2-oxoglutarate dehydrogenase complex in amino acid metabolism. Amino Acids 44 (2), pp. 683 - 700 (2013)

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56.

Journal Article

Adhikari, E.; Lee, D. K.; Giavalisco, P.; Sieburth, L. E.: Long-Distance Signaling in bypass1 Mutants: Bioassay Development Reveals the bps Signal to Be a Metabolite. Molecular Plant 6 (1), pp. 164 - 173 (2013)

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57.

Journal Article

Agudelo-Romero, P.; Erban, A.; Sousa, L.; Pais, M. S.; Kopka, J.; Fortes, A. M.: Search for Transcriptional and Metabolic Markers of Grape Pre-Ripening and Ripening and Insights into Specific Aroma Development in Three Portuguese Cultivars. PLoS One 8 (4), e60422 (2013)

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58.

Journal Article

Angel Torres, M.; Morales, J.; Sanchez-Rodriguez, C.; Molina, A.; Dangl, J. L.: Functional Interplay Between Arabidopsis NADPH Oxidases and Heterotrimeric G Protein. Molecular Plant-Microbe Interactions 26 (6), pp. 686 - 694 (2013)

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59.

Journal Article

Antonio, C.; Mustafa, N. R.; Osorio, S.; Tohge, T.; Giavalisco, P.; Willmitzer, L.; Rischer, H.; Oksman-Caldentey, K. M.; Verpoorte, R.; Fernie, A. R.: Analysis of the interface between primary and secondary metabolism in Catharanthus roseus cell cultures using 13C-stable isotope feeding and coupled mass spectrometry. Molecular Plant 6 (2), pp. 581 - 584 (2013)

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60.

Journal Article

Archacki, R.; Buszewicz, D.; Sarnowski, T. J.; Sarnowska, E.; Rolicka, A. T.; Tohge, T.; Fernie, A. R.; Jikumaru, Y.; Kotlinski, M.; Iwanicka-Nowicka, R. et al.; Kalisiak, K.; Patryn, J.; Halibart-Puzio, J.; Kamiya, Y.; Davis, S. J.; Koblowska, M. K.; Jerzmanowski, A.: BRAHMA ATPase of the SWI/SNF Chromatin Remodeling Complex Acts as a Positive Regulator of Gibberellin-Mediated Responses in Arabidopsis. PLoS One 8 (3), e58588 (2013)

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61.

Journal Article

Arnold, A.; Nikoloski, Z.: Comprehensive classification and perspective for modelling photorespiratory metabolism. Plant Biology 15 (4), pp. 667 - 675 (2013)

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62.

Journal Article

Bar-Even, A.; Noor, E.; Flamholz, A.; Milo, R.: Design and analysis of metabolic pathways supporting formatotrophic growth for electricity-dependent cultivation of microbes. SI 1827 (8-9), pp. 1039 - 1047 (2013)

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63.

Journal Article

Barlow, P. W.; Fisahn, J.; Yazdanbakhsh, N.; Moraes, T. A.; Khabarova, O. V.; Gallep, C. M.: Arabidopsis thaliana root elongation growth is sensitive to lunisolar tidal acceleration and may also be weakly correlated with geomagnetic variations. Annals of Botany 111 (5), pp. 859 - 872 (2013)

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64.

Journal Article

Bock, R.: Strategies for metabolic pathway engineering with multiple transgenes. Plant Molecular Biology 83 (1-2), pp. 21 - 31 (2013)

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65.

Journal Article

Bocobza, S. E.; Malitsky, S.; Araujo, W. L.; Nunes-Nesi, A.; Meir, S.; Shapira, M.; Fernie, A. R.; Aharoni, A.: Orchestration of Thiamin Biosynthesis and Central Metabolism by Combined Action of the Thiamin Pyrophosphate Riboswitch and the Circadian Clock in Arabidopsis. The Plant Cell 25 (1), pp. 288 - 307 (2013)

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66.

Journal Article

Bromke, M. A.; Giavalisco, P.; Willmitzer, L.; Hesse, H.: Metabolic Analysis of Adaptation to Short-Term Changes in Culture Conditions of the Marine Diatom Thalassiosira pseudonana. PLoS One 8 (6), p. e67340 (2013)

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67.

Journal Article

Bromke, M. A.; Hoefgen, R.; Hesse, H.: Phylogenetic aspects of the sulfate assimilation genes from Thalassiosira pseudonana. Amino Acids 44 (5), pp. 1253 - 1265 (2013)

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68.

Journal Article

Brotman, Y.; Landau, U.; Cuadros-Inostroza, A.; Tohge, T.; Fernie, A. R.; Chet, I.; Viterbo, A.; Willmitzer, L.: Trichoderma-Plant Root Colonization: Escaping Early Plant Defense Responses and Activation of the Antioxidant Machinery for Saline Stress Tolerance. PLoS Pathogens 9 (3), e1003221 (2013)

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69.

Journal Article

Caldana, C.; Li, Y.; Leisse, A.; Zhang, Y.; Bartholomaeus, L.; Fernie, A. R.; Willmitzer, L.; Giavalisco, P.: Systemic Analysis of Inducible Target of Rapamycin Mutants Reveal a General Metabolic Switch Controlling Growth in Arabidopsis thaliana. The Plant Journal 73 (6), pp. 897 - 909 (2013)

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70.

Journal Article

Caroca, R.; Howell, K. A.; Hasse, C.; Ruf, S.; Bock, R.: Design of chimeric expression elements that confer high-level gene activity in chromoplasts. Plant Journal 73 (3), pp. 368 - 379 (2013)

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71.

Journal Article

Dai, Z. W.; Leon, C.; Feil, R.; Lunn, J. E.; Delrot, S.; Gomes, E.: Metabolic profiling reveals coordinated switches in primary carbohydrate metabolism in grape berry (Vitis vinifera L.), a non-climacteric fleshy fruit. Journal of Experimental Botany 64 (5), pp. 1345 - 1355 (2013)

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72.

Journal Article

Dall'Osto, L.; Piques, M.; Ronzani, M.; Molesini, B.; Alboresi, A.; Cazzaniga, S.; Bassi, R.: The Arabidopsis nox Mutant Lacking Carotene Hydroxylase Activity Reveals a Critical Role for Xanthophylls in Photosystem I Biogenesis. PLANT CELL 25 (2), pp. 591 - 608 (2013)

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73.

Journal Article

de Godoy, F.; Bermudez, L.; Lira, B. S.; de Souza, A. P.; Elbl, P.; Demarco, D.; Alseekh, S.; Insani, M.; Buckeridge, M.; Almeida, J. et al.; Grigioni, G.; Fernie, A. R.; Carrari, F.; Rossi, M.: Galacturonosyltransferase 4 silencing alters pectin composition and carbon partitioning in tomato. Journal of Experimental Botany 64 (8), pp. 2449 - 2466 (2013)

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74.

Journal Article

de Souza, W. R.; Morais, E. R.; Krohn, N. G.; Savoldi, M.; Goldman, M. H. S.; Rodrigues, F.; Caldana, C.; Semelka, C. T.; Tikunov, A. P.; Macdonald, J. M. et al.; Goldman, G. H.: Identification of Metabolic Pathways Influenced by the G-Protein Coupled in Aspergillus nidulans. PLoS One 8 (5), e62088 (2013)

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75.

Journal Article

Degenkolbe, T.; Do, P. T.; Kopka, J.; Zuther, E.; Hincha, D. K.; Koehl, K. I.: Identification of Drought Tolerance Markers in a Diverse Population of Rice Cultivars by Expression and Metabolite Profiling. PLoS One 8 (5), e63637 (2013)

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76.

Journal Article

Demir, F.; Horntrich, C.; Blachutzik, J. O.; Scherzer, S.; Reinders, Y.; Kierszniowska, S.; Schulze, W. X.; Harms, G. S.; Hedrich, R.; Geiger, D. et al.; Kreuzer, I.: Arabidopsis nanodomain-delimited ABA signaling pathway regulates the anion channel SLAH3. Proceedings of the National Academy of Sciences of the United States of America 110 (20), pp. 8296 - 8301 (2013)

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77.

Journal Article

Detmann, K.; Araujo, W.; Martins, S.; Fernie, A. R.; Damatta, F.: Metabolic alterations triggered by silicon nutrition: Is there a signaling role for silicon? Plant Signaling & Behavior 8 (1), p. e22523 (2013)

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78.

Journal Article

Devers, E. A.; Teply, J.; Reinert, A.; Gaude, N.; Krajinski, F.: An endogenous artificial microRNA system for unraveling the function of root endosymbioses related genes in Medicago truncatula. BMC Plant Biology 13 (1), p. 82 (2013)

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79.

Journal Article

Di Matteo, A.; Ruggieri, V.; Sacco, A.; Rigano, M.; Carriero, F.; Bolger, A.; Fernie, A. R.; Frusciante, L.; Barone, A.: Identification of candidate genes for phenolic accumulation in tomato fruit. Plant Science 205-206, pp. 87 - 96 (2013)

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80.

Journal Article

Do, P. T.; Degenkolbe, T.; Erban, A.; Heyer, A. G.; Kopka, J.; Koehl, K. I.; Hincha, D. K.; Zuther, E.: Dissecting Rice Polyamine Metabolism under Controlled Long-Term Drought Stress. PLoS One 8 (4), e60325 (2013)

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81.

Journal Article

Doerr, J. R.; Yu, Y.; Milanovic, M.; Beuster, G.; Zasada, C.; Daebritz, J. H. M.; Lisec, J.; Lenze, D.; Gerhardt, A.; Schleicher, K. et al.; Kratzat, S.; Purfuerst, B.; Walenta, S.; Mueller-Klieser, W.; Graeler, M.; Hummel, M.; Keller, U.; Buck, A. K.; Doerken, B.; Willmitzer, L.; Reimann, M.; Kempa, S.; Lee, S.; Schmitt, C. A.: Synthetic lethal metabolic targeting of cellular senescence in cancer therapy. Nature 501 (7467), pp. 421 - 425 (2013)

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82.

Journal Article

Dominguez, P. G.; Frankel, N.; Mazuch, J.; Balbo, I.; Iusem, N. D.; Fernie, A. R.; Carrari, F.: Asr1 Mediates Glucose-Hormone Crosstalk by Affecting Sugar Trafficking in Tobacco Plants. Plant Physiology 161 (3), pp. 1486 - 1500 (2013)

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83.

Journal Article

Duan, G. Y.; Christian, N.; Schwachtje, J.; Walther, D.; Ebenhoeh, O.: The Metabolic Interplay between Plants and Phytopathogens. Metabolites 3 (1), pp. 1 - 23 (2013)

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84.

Journal Article

Duarte, G. T.; Matiolli, C. C.; Pant, B. D.; Schlereth, A.; Scheible, W.-R.; Stitt, M.; Vicentini, R.; Vincentz, M.: Involvement of microRNA-related regulatory pathways in the glucose-mediated control of Arabidopsis early seedling development. Journal of experimental botany 64 (14), pp. 4301 - 4312 (2013)

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85.

Journal Article

Dubiella, U.; Seybold, H.; Durian, G.; Komander, E.; Lassig, R.; Witte, C.-P.; Schulze, W. X.; Romeis, T.: Calcium-dependent protein kinase/NADPH oxidase activation circuit is required for rapid defense signal propagation. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 110 (21), pp. 8744 - 8749 (2013)

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86.

Journal Article

Dubois, M.; Skirycz, A.; Claeys, H.; Maleux, K.; Dhondt, S.; De Bodt, S.; Vanden Bossche, R.; De Milde, L.; Yoshizumi, T.; Matsui, M. et al.; Inze, D.: ETHYLENE RESPONSE FACTOR6 Acts as a Central Regulator of Leaf Growth under Water-Limiting Conditions in Arabidopsis. Plant Physiology 162 (1), pp. 319 - 332 (2013)

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87.

Journal Article

Fernie, A. R.; Bauwe, H.; Eisenhut, M.; Florian, A.; Hanson, D. T.; Hagemann, M.; Keech, O.; Mielewczik, M.; Nikoloski, Z.; Peterhansel, C. et al.; Roje, S.; Sage, R.; Timm, S.; von Cammerer, S.; Weber, A. P.; Westhoff, P.: Perspectives on plant photorespiratory metabolism. Plant Biology 15 (4), pp. 748 - 753 (2013)

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88.

Journal Article

Fernie, A. R.; Morgan, J. A.: Analysis of metabolic flux using dynamic labeling and metabolic modeling. Plant, Cell and Environment 36 (9), pp. 1738 - 1750 (2013)

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89.

Journal Article

Fernie, A. R.; Tohge, T.: Plastic, fantastic! Phenotypic variance in the transcriptional landscape of the grape berry. Genome Biology 14 (6), 119 (2013)

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90.

Journal Article

Fernie, A. R.; Usadel, B.: The plant transcriptome – from integrating observations to models. Frontiers in Plant Science 4, p. 48 (2013)

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91.

Journal Article

Finster, S.; Eggert, E.; Zoschke, R.; Weihe, A.; Schmitz-Linneweber, C.: Light-dependent, plastome-wide association of the plastid-encoded RNA polymerase with chloroplast DNA. PLANT JOURNAL 76 (5), pp. 849 - 860 (2013)

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92.

Journal Article

Flamholz, A.; Noor, E.; Bar-Even, A.; Liebermeister, W.; Milo, R.: Glycolytic strategy as a tradeoff between energy yield and protein cost. Proceedings of the National Academy of Sciences of the United States of America 110 (24), pp. 10039 - 10044 (2013)

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93.

Journal Article

Florian, A.; Araujo, W. L.; Fernie, A. R.: New insights into photorespiration obtained from metabolomics. Plant Biology 15 (4), pp. 656 - 666 (2013)

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94.

Journal Article

Garchery, C.; Gest, N.; Do, P. T.; Alhagdow, M.; Baldet, P.; Menard, G.; Rothan, C.; Massot, C.; Gautier, H.; Aarrouf, J. et al.; Fernie, A. R.; Stevens, R.: A diminution in ascorbate oxidase activity affects carbon allocation and improves yield in tomato under water deficit. Plant Cell and Environment 36 (1), pp. 159 - 175 (2013)

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95.

Journal Article

Gliwicka, M.; Nowak, K.; Balazadeh, S.; Mueller-Roeber, B.; Gaj, M.: Extensive Modulation of the Transcription Factor Transcriptome during Somatic Embryogenesis in Arabidopsis thaliana. PLoS One 8 (7), e69261 (2013)

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96.

Journal Article

Gray, J. W.; Nelson Dittrich, A. C.; Chen, S.; Avila, J.; Giavalisco, P.; Devarenne, T. P.: Two Pdk1 phosphorylation sites on the plant cell death suppressor Adi3 contribute to substrate phosphorylation. Biochimica et Biophysica Acta 1834 (6), pp. 1099 - 1106 (2013)

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97.

Journal Article

Greiner, S.; Bock, R.: Tuning a ménage à trois: co-evolution and co-adaptation of nuclear and organellar genomes in plants. Bioessays 35 (4), pp. 354 - 365 (2013)

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98.

Journal Article

Gupta, K. J.; Brotman, Y.; Segu, S.; Zeier, T.; Zeier, J.; Persijn, S. T.; Cristescu, S. M.; Harren, F. J.; Bauwe, H.; Fernie, A. R. et al.; Kaiser, W. M.; Mur, L. A.: The form of nitrogen nutrition affects resistance against Pseudomonas syringae pv. phaseolicola in tobacco. Journal of Experimental Botany 64 (2), pp. 553 - 868 (2013)

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99.

Journal Article

Hagemann, M.; Fernie, A. R.; Espie, G. S.; Kern, R.; Eisenhut, M.; Reumann, S.; Bauwe, H.; Weber, A. P.: Evolution of the biochemistry of the photorespiratory C2 cycle. Plant Biology 15 (4), pp. 639 - 647 (2013)

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100.

Journal Article

Hauf, W.; Schlebusch, M.; Huege, J.; Kopka, J.; Hagemann, M.; Forchhammer, K.: Metabolic Changes in Synechocystis PCC6803 upon Nitrogen-Starvation: Excess NADPH Sustains Polyhydroxybutyrate Accumulation. Metabolites 3, pp. 101 - 118 (2013)

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