Publications of the MPI

51.

Journal Article

Endler, A.; Persson, S.: Cellulose Synthases and Synthesis in Arabidopsis. Molecular Plant 4 (2), pp. 199 - 211 (2011)

52.

Journal Article

Engel, N.; Ewald, R.; Gupta, K. J.; Zrenner, R.; Hagemann, M.; Bauwe, H.: The Presequence of Arabidopsis Serine Hydroxymethyltransferase SHM2 Selectively Prevents Import into Mesophyll Mitochondria. Plant Physiology 157 (4), pp. 1711 - 1720 (2011)

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53.

Journal Article

Fait, A.; Nunes Nesi, A.; Angelovici, R.; Lehmann, M.; Pham, P. A.; Song, L.; Haslam, R. P.; Napier, J. A.; Galili, G.; Fernie, A. R.: Targeted Enhancement of Glutamate-to-gamma-Aminobutyrate Conversion in Arabidopsis Seeds Affects Carbon-Nitrogen Balance and Storage Reserves in a Development-Dependent Manner. Plant Physiology 157 (3), pp. 1026 - 1042 (2011)

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54.

Journal Article

Fernie, A. R.; Klee, H. J.: The use of natural genetic diversity in the understanding of metabolic organization and regulation. Frontiers in Plant Science 2, p. 59 (2011)

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55.

Journal Article

Fettke, J.; Nunes-Nesi, A.; Fernie, A. R.; Steup, M.: Identification of a novel heteroglycan-interacting protein, HIP 1.3, from Arabidopsis thaliana. Journal of Plant Physiology 168 (12), pp. 1415 - 1425 (2011)

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56.

Journal Article

Fleischmann, T. T.; Scharff, L. B.; Alkatib, S.; Hasdorf, S.; Schöttler, M. A.; Bock, R.: Nonessential plastid-encoded ribosomal proteins in tobacco: a developmental role for plastid translation and implications for reductive genome evolution. The Plant Cell 23 (9), pp. 3137 - 3155 (2011)

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57.

Journal Article

Fondevilla, S.; Kuester, H.; Krajinski, F.; Cubero, J. I.; Rubiales, D.: Identification of genes differentially expressed in a resistant reaction to Mycosphaerella pinodes in pea using microarray technology. BMC Genomics 12, p. 28 (2011)

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58.

Journal Article

Franken, P.; Andrade-Linares, D. R.; Grosch, R.; Rexer, K.-H.; Kost, G.; Restrepo, S.; de Garcia, M. C. C.; Maximova, E.: Colonization of roots of cultivated Solanum lycopersicum by dark septate and other ascomycetous endophytes. Mycologia 103 (4), pp. 710 - 721 (2011)

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59.

Journal Article

Fuentes, D.; Meneses, M.; Nunes-Nesi, A.; Araujo, W.; Tapia, R.; Gomez, I.; Holuigue, L.; Gutierrez, R. A.; Fernie, A. R.; Jordana, X.: A Deficiency in the Flavoprotein of Arabidopsis Mitochondrial Complex II Results in Elevated Photosynthesis and Better Growth in Nitrogen-Limiting Conditions. Plant Physiology 157 (3), pp. 1114 - 1127 (2011)

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60.

Journal Article

Fu, X.; Giavalisco, P.; Liu, X. L.; Catchpole, G.; Fu, N.; Ning, Z. B.; Guo, S.; Yan, Z.; Somel, M.; Paabo, S. et al.; Zeng, R.; Willmitzer, L.; Khaitovich, P.: Rapid metabolic evolution in human prefrontal cortex. Proceedings of the National Academy of Sciences of the United States of America 108 (15), pp. 6181 - 6186 (2011)

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61.

Journal Article

Gabriel-Neumann, E.; Neumann, G.; Leggewie, G.; George, E.: Constitutive overexpression of the sucrose transporter SoSUT1 in potato plants increases arbuscular mycorrhiza fungal root colonization under high, but not under low, soil phosphorus availability. Journal of Plant Physiology 168 (9), pp. 911 - 919 (2011)

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62.

Journal Article

Gajdanowicz, P.; Michard, E.; Sandmann, M.; Rocha, M.; Correa, L. G. G.; Ramirez-Aguilar, S. J.; Gomez-Porras, J. L.; Gonzalez, W.; Thibaud, J. B.; van Dongen, J. T. et al.; Dreyer, I.: Potassium (K plus ) gradients serve as a mobile energy source in plant vascular tissues. Proceedings of the National Academy of Sciences of the United States of America 108 (2), pp. 864 - 869 (2011)

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63.

Journal Article

Gery, C.; Zuther, E.; Schulz, E.; Legoupi, J.; Chauveau, A.; McKhann, H.; Hincha, D. K.; Teoule, E.: Natural variation in the freezing tolerance of Arabidopsis thaliana: Effects of RNAi-induced CBF depletion and QTL localisation vary among accessions. Plant Science 180 (1), pp. 12 - 23 (2011)

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64.

Journal Article

Giavalisco, P.; Li, Y.; Matthes, A.; Eckhardt, A.; Hubberten, H.-M.; Hesse, H.; Segu, S.; Hummel, J.; Koehl, K. I.; Willmitzer, L.: Elemental formula annotation of polar and lipophilic metabolites using 13C, 15N and 34S isotope labelling, in combination with high-resolution mass spectrometry. The Plant Journal 68 (2), pp. 364 - 376 (2011)

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65.

Journal Article

Gonzalez-Rabade, N.; McGowan, E. G.; Zhou, F.; McCabe, M. S.; Bock, R.; Dix, P. J.; Gray, J. C.; Ma, J. K. C.: Immunogenicity of chloroplast-derived HIV-1 p24 and a p24-Nef fusion protein following subcutaneous and oral administration in mice. Plant Biotechnology Journal 9 (6), pp. 629 - 638 (2011)

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66.

Journal Article

Graf, A.; Smith, A. M.: Starch and the clock: the dark side of plant productivity. Trends in Plant Science 16 (3), pp. 169 - 175 (2011)

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67.

Journal Article

Greiner, S.; Rauwolf, U.; Meurer, J.; Herrmann, R. G.: The role of plastids in plant speciation. Molecular Ecology 20 (4), pp. 671 - 691 (2011)

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68.

Journal Article

Grimbs, S.; Arnold, A.; Koseka, A.; Kurths, J.; Selbig, J.; Nikoloski, Z.: Spatiotemporal dynamics of the Calvin cycle: Multistationarity and symmetry breaking instabilities. Biosystems 103 (2), pp. 212 - 223 (2011)

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69.

Journal Article

Gunl, M.; Neumetzler, L.; Kraemer, F.; de Souza, A.; Schultink, A.; Pena, M.; York, W. S.; Pauly, M.: AXY8 encodes an alpha-fucosidase, underscoring the importance of apoplastic metabolism on the fine structure of Arabidopsis cell wall polysaccharides. The Plant Cell 23 (11), pp. 4025 - 4040 (2011)

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70.

Journal Article

Gupta, K. J.; Fernie, A. R.; Kaiser, W. M.; van Dongen, J. T.: On the origins of nitric oxide. Trends in Plant Science 16 (3), pp. 160 - 168 (2011)

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71.

Journal Article

Gur, A.; Semel, Y.; Osorio, S.; Friedmann, M.; Seekh, S.; Ghareeb, B.; Mohammad, A.; Pleban, T.; Gera, G.; Fernie, A. R. et al.; Zamir, D.: Yield quantitative trait loci from wild tomato are predominately expressed by the shoot. Theoretical and Applied Genetics 122 (2), pp. 405 - 420 (2011)

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72.

Journal Article

Gutzat, R.; Borghi, L.; Fuetterer, J.; Bischof, S.; Laizet, Y.; Hennig, L.; Feil, R.; Lunn, J.; Gruissem, W.: RETINOBLASTOMA-RELATED PROTEIN controls the transition to autotrophic plant development. Development 138 (14), pp. 2977 - 2986 (2011)

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73.

Journal Article

Guziolowski, C.; Blachon, S.; Baumuratova, T.; Stoll, G.; Radulescu, O.; Siegel, A.: Designing Logical Rules to Model the Response of Biomolecular Networks with Complex Interactions: An Application to Cancer Modeling. IEEE-ACM Transactions on Computational Biology and Bioinformatics 8 (5), pp. 1223 - 1234 (2011)

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74.

Journal Article

Hackenberg, C.; Kern, R.; Huege, J.; Stal, L. J.; Tsuji, Y.; Kopka, J.; Shiraiwa, Y.; Bauwe, H.; Hagemann, M.: Cyanobacterial lactate oxidases serve as essential partners in N2 fixation and evolved into photorespiratory glycolate oxidases in plants. The Plant Cell 23 (8), pp. 2978 - 2990 (2011)

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75.

Journal Article

Haedrich, N.; Gibon, Y.; Schudoma, C.; Altmann, T.; Lunn, J. E.; Stitt, M.: Use of TILLING and robotised enzyme assays to generate an allelic series of Arabidopsis thaliana mutants with altered ADP-glucose pyrophosphorylase activity. Journal of Plant Physiology 168 (12), pp. 1395 - 1405 (2011)

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76.

Journal Article

Haferkamp, I.; Fernie, A. R.; Neuhaus, H. E.: Adenine nucleotide transport in plants: much more than a mitochondrial issue. Trends in Plant Science 16 (9), pp. 507 - 515 (2011)

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77.

Journal Article

Hempel, S.; Koseska, A.; Nikoloski, Z.; Kurths, J.: Unraveling gene regulatory networks from time-resolved gene expression data - a measures comparison study. BMC Bioinformatics 12, p. 292 (2011)

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78.

Journal Article

Hempel, S.; Kurths, J.; Koseska, A.; Nikoloski, Z.: Inner Composition Alignment for Inferring Directed Networks from Short Time Series. Physical Review Letters 107 (5), p. 054101 (2011)

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79.

Journal Article

Hoehenwarter, W.; Larhlimi, A.; Hummel, J.; Egelhofer, V.; Selbig, J.; van Dongen, J. T.; Wienkoop, S.; Weckwerth, W.: MAPA Distinguishes Genotype-Specific Variability of Highly Similar Regulatory Protein Isoforms in Potato Tuber. Journal of Proteome Research 10 (7), pp. 2979 - 2991 (2011)

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80.

Journal Article

Howard, T. P.; Fryer, M. J.; Singh, P.; Metodiev, M.; Lytovchenko, A.; Obata, T.; Fernie, A. R.; Kruger, N. J.; Quick, W. P.; Lloyd, J. C. et al.; Raines, C. A.: Antisense Suppression of the Small Chloroplast Protein CP12 in Tobacco Alters Carbon Partitioning and Severely Restricts Growth. Plant Physiology 157 (2), pp. 620 - 631 (2011)

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81.

Journal Article

Huege, J.; Goetze, J.; Schwarz, D.; Bauwe, H.; Hagemann, M.; Kopka, J.: Modulation of the Major Paths of Carbon in Photorespiratory Mutants of Synechocystis. PLoS One 6 (1), p. e16278 (2011)

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82.

Journal Article

Huege, J.; Krall, L.; Steinhauser, M.-C.; Giavalisco, P.; Rippka, R.; de Marsac, N. T.; Steinhauser, D.: Sample amount alternatives for data adjustment in comparative cyanobacterial metabolomics. Analytical and Bioanalytical Chemistry 399 (10), pp. 3503 - 3517 (2011)

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83.

Journal Article

Hummel, J.; Segu, S.; Li, Y.; Irgang, S.; Jueppner, J.; Giavalisco, P.: Ultra performance liquid chromatography and high resolution mass spectrometry for the analysis of plant lipids. Frontiers in Plant Science 2, p. 54 (2011)

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84.

Journal Article

Hundertmark, M.; Buitink, J.; Leprince, O.; Hincha, D. K.: The reduction of seed-specific dehydrins reduces seed longevity in Arabidopsis thaliana. Seed Science Research 21 (3), pp. 165 - 173 (2011)

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85.

Journal Article

Hundertmark, M.; Dimova, R.; Lengefeld, J.; Seckler, R.; Hincha, D. K.: The intrinsically disordered late embryogenesis abundant protein LEA18 from Arabidopsis thaliana modulates membrane stability through binding and folding. Biochimica et Biophysica Acta-Biomembranes 1808 (1), pp. 446 - 453 (2011)

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86.

Journal Article

Iftime, D.; Hannah, M. A.; Peterbauer, T.; Heyer, A. G.: Stachyose in the cytosol does not influence freezing tolerance of transgenic Arabidopsis expressing stachyose synthase from adzuki bean. Plant Science 180 (1), pp. 24 - 30 (2011)

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87.

Journal Article

Janssen, S.; Schudoma, C.; Steger, G.; Giegerich, R.: Lost in folding space? Comparing four variants of the thermodynamic model for RNA secondary structure prediction. BMC Bioinformatics 12 (1), p. 429 (2011)

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88.

Journal Article

Joshi, H. J.; Hirsch-Hoffmann, M.; Baerenfaller, K.; Gruissem, W.; Baginsky, S.; Schmidt, R.; Schulze, W. X.; Sun, Q.; van Wijk, K. J.; Egelhofer, V. et al.; Wienkoop, S.; Weckwerth, W.; Bruley, C.; Rolland, N.; Toyoda, T.; Nakagami, H.; Jones, A. M.; Briggs, S. P.; Castleden, I.; Tanz, S. K.; Millar, A. H.; Heazlewood, J. L.: MASCP Gator: An Aggregation Portal for the Visualization of Arabidopsis Proteomics Data. Plant Physiology 155 (1), pp. 259 - 270 (2011)

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89.

Journal Article

Jurchott, K.; Guo, K. T.; Catchpole, G.; Feher, K.; Willmitzer, L.; Schichor, C.; Selbig, J.: Comparison of metabolite profiles in U87 glioma cells and mesenchymal stem cells. Biosystems 105 (2), pp. 130 - 139 (2011)

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90.

Journal Article

Karlova, R.; Rosin, F. M.; Busscher-Lange, J.; Parapunova, V.; Do, P. T.; Fernie, A. R.; Fraser, P. D.; Baxter, C.; Angenent, G. C.; de Maagd, R. A.: Transcriptome and Metabolite Profiling Show That APETALA2a Is a Major Regulator of Tomato Fruit Ripening. The Plant Cell 23 (3), pp. 923 - 941 (2011)

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91.

Journal Article

Kartal, O.; Mahlow, S.; Skupin, A.; Ebenhoeh, O.: Carbohydrate-active enzymes exemplify entropic principles in metabolism. Molecular Systems Biology 7, p. 542 (2011)

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92.

Journal Article

Klie, S.; Krueger, S.; Krall, L.; Giavalisco, P.; Fluegge, U.-I.; Willmitzer, L.; Steinhauser, D.: Analysis of the compartmentalized metabolome – a validation of the non-aqueous fractionation technique. Frontiers in Plant Science 2, p. 55 (2011)

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93.

Journal Article

Kochevenko, A.; Fernie, A. R.: The genetic architecture of branched-chain amino acid accumulation in tomato fruits. Journal of Experimental Botany 62 (11), pp. 3895 - 3906 (2011)

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94.

Journal Article

Köhler, C.; Kradolfer, D.: Epigenetic mechanisms in the endosperm and their consequences for the evolution of flowering plants. Biochimica et Biophysica Acta: BBA Gene Regulatory Mechanism 1809, pp. 438 - 443 (2011)

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95.

Journal Article

Krueger, S.; Giavalisco, P.; Krall, L.; Steinhauser, M.-C.; Buessis, D.; Usadel, B.; Fluegge, U.-I.; Fernie, A. R.; Willmitzer, L.; Steinhauser, D.: A Topological Map of the Compartmentalized Arabidopsis thaliana Leaf Metabolome. PLoS One 6 (3), p. e17806 (2011)

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96.

Journal Article

Kryvych, S.; Kleessen, S.; Ebert, B.; Kersten, B.; Fisahn, J.: Proteomics - The key to understanding systems biology of Arabidopsis trichomes. Phytochemistry 72 (10), pp. 1061 - 1070 (2011)

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97.

Journal Article

Kusano, M.; Tohge, T.; Fukushima, A.; Kobayashi, M.; Hayashi, N.; Otsuki, H.; Kondou, Y.; Goto, H.; Kawashima, M.; Matsuda, F. et al.; Niida, R.; Matsui, M.; Saito, K.; Fernie, A. R.: Metabolomics reveals comprehensive reprogramming involving two independent metabolic responses of Arabidopsis to UV-B light. The Plant Journal 67 (2), pp. 354 - 369 (2011)

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98.

Journal Article

Lai, A. G.; Denton-Giles, M.; Mueller-Roeber, B.; Schippers, J. H. M.; Dijkwel, P. P.: Positional Information Resolves Structural Variations and Uncovers an Evolutionarily Divergent Genetic Locus in Accessions of Arabidopsis thaliana. Genome Biology and Evolution 3, pp. 627 - 640 (2011)

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99.

Journal Article

Lenz, D.; May, P.; Walther, D.: Comparative analysis of miRNAs and their targets across four plant species. BMC Research Notes 4, p. 483 (2011)

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100.

Journal Article

Licausi, F.: Regulation of the molecular response to oxygen limitations in plants. New Phytologist 190 (3), pp. 550 - 555 (2011)