Journal Article (139)

51.
Journal Article
Hannemann, J.; Poorter, H.; Usadel, B.; Blaesing, O. E.; Finck, A.; Tardieu, F.; Atkin, O. K.; Pons, T.; Stitt, M.; Gibon, Y.: Xeml Lab: a tool that supports the design of experiments at a graphical interface and generates computer-readable metadata files, which capture information about genotypes, growth conditions, environmental perturbations and sampling strategy. Plant Cell and Environment 32 (9), pp. 1185 - 1200 (2009)
52.
Journal Article
Heide, H.; Nordhues, A.; Drepper, F.; Nick, S.; Schulz-Raffelt, M.; Haehnel, W.; Schroda, M.: Application of quantitative immunoprecipitation combined with knockdown and cross-linking to Chlamydomonas reveals the presence of vesicle-inducing protein in plastids 1 in a common complex with chloroplast HSP90C. Proteomics 9 (11), pp. 3079 - 3089 (2009)
53.
Journal Article
Hernandez, G.; Valdes-Lopez, O.; Ramirez, M.; Goffard, N.; Weiller, G.; Aparicio-Fabre, R.; Fuentes, S. I.; Erban, A.; Kopka, J.; Udvardi, M. K. et al.; Vance, C. P.: Global Changes in the Transcript and Metabolic Profiles during Symbiotic Nitrogen Fixation in Phosphorus-Stressed Common Bean Plants. Plant Physiology 151 (3), pp. 1221 - 1238 (2009)
54.
Journal Article
Holzl, G.; Witt, S.; Gaude, N.; Melzer, M.; Schöttler, M. A.; Doermann, P.: The Role of Diglycosyl Lipids in Photosynthesis and Membrane Lipid Homeostasis in Arabidopsis. Plant Physiology 150 (3), pp. 1147 - 1159 (2009)
55.
Journal Article
Howell, K. A.; Narsai, R.; Carroll, A.; Ivanova, A.; Lohse, M.; Usadel, B.; Millar, A. H.; Whelan, J.: Mapping Metabolic and Transcript Temporal Switches during Germination in Rice Highlights Specific Transcription Factors and the Role of RNA Instability in the Germination Process. Plant Physiology 149 (2), pp. 961 - 980 (2009)
56.
Journal Article
Ito, J.; Taylor, N. L.; Castleden, I.; Weckwerth, W.; Millar, A. H.; Heazlewood, J. L.: A survey of the Arabidopsis thaliana mitochondrial phosphoproteome. Proteomics 9 (17), pp. 4229 - 4240 (2009)
57.
Journal Article
Janacek, S. H.; Trenkamp, S.; Palmer, B.; Brown, N. J.; Parsley, K.; Stanley, S.; Astley, H. M.; Rolfe, S. A.; Quick, W. P.; Fernie, A. R. et al.; Hibberd, J. M.: Photosynthesis in cells around veins of the C-3 plant Arabidopsis thaliana is important for both the shikimate pathway and leaf senescence as well as contributing to plant fitness. The Plant Journal 59 (2), pp. 329 - 343 (2009)
58.
Journal Article
Karcher, D.; Bock, R.: Identification of the chloroplast adenosine-to-inosine tRNA editing enzyme. RNA 15 (7), pp. 1251 - 1257 (2009)
59.
Journal Article
Karcher, D.; Koester, D.; Schadach, A.; Klevesath, A.; Bock, R.: The Chlamydomonas Chloroplast HLP Protein Is Required for Nucleoid Organization and Genome Maintenance. Molecular Plant 2 (6), pp. 1223 - 1232 (2009)
60.
Journal Article
Kartal, O.; Ebenhoeh, O.: Ground State Robustness as an Evolutionary Design Principle in Signaling Networks. PLoS One 4 (12), p. e8001 (2009)
61.
Journal Article
Kempa, S.; Hummel, J.; Schwemmer, T.; Pietzke, M.; Strehmel, N.; Wienkoop, S.; Kopka, J.; Weckwerth, W.: An automated GCxGC-TOF-MS protocol for batch-wise extraction and alignment of mass isotopomer matrixes from differential C-13-labelling experiments: a case study for photoautotrophic-mixotrophic grown Chlamydomonas reinhardtii cells. Journal of Basic Microbiology 49 (1), pp. 82 - 91 (2009)
62.
Journal Article
Kersten, B.; Agrawal, G. K.; Durek, P.; Neigenfind, J.; Schulze, W. X.; Walther, D.; Rakwal, R.: Plant phosphoproteomics: An update. Proteomics 9 (4), pp. 964 - 988 (2009)
63.
Journal Article
Keurentjes, J. J.; Sulpice, R.: The role of natural variation in dissecting genetic regulation of primary metabolism. Plant Signaling & Behavior 4 (3), pp. 244 - 246 (2009)
64.
Journal Article
Kierszniowska, S.; Seiwert, B.; Schulze, W. X.: Definition of Arabidopsis Sterol-rich Membrane Microdomains by Differential Treatment with Methyl-beta-cyclodextrin and Quantitative Proteomics. Molecular & Cellular Proteomics 8 (4), pp. 612 - 623 (2009)
65.
Journal Article
Kierszniowska, S.; Walther, D.; Schulze, W. X.: Ratio-dependent significance thresholds in reciprocal N-15-labeling experiments as a robust tool in detection of candidate proteins responding to biological treatment. Proteomics 9 (7), pp. 1916 - 1924 (2009)
66.
Journal Article
Kim, J. A.; Cho, K.; Singh, R.; Jung, Y. H.; Jeong, S. H.; Kim, S. H.; Lee, J. E.; Cho, Y. S.; Agrawal, G. K.; Rakwal, R. et al.; Tamogami, S.; Kersten, B.; Jeon, J. S.; An, G.; Jwa, N. S.: Rice OsACDR1 (Oryza sativa accelerated cell death and resistance 1) is a potential positive regulator of fungal disease resistance. Molecules and Cells 28 (5), pp. 431 - 439 (2009)
67.
Journal Article
Kohl, S.; Bock, R.: Transposition of a bacterial insertion sequence in chloroplasts. Plant Journal 58 (3), pp. 423 - 436 (2009)
68.
Journal Article
Krall, L.; Huege, J.; Catchpole, G.; Steinhauser, D.; Willmitzer, L.: Assessment of sampling strategies for gas chromatography-mass spectrometry (GC-MS) based metabolomics of cyanobacteria. Journal of Chromatography B-Analytical Technologies in the Biomedical and Life Sciences 877 (27), pp. 2952 - 2960 (2009)
69.
Journal Article
Kreuzwieser, J.; Hauberg, J.; Howell, K. A.; Carroll, A.; Rennenberg, H.; Millar, A. H.; Whelan, J.: Differential Response of Gray Poplar Leaves and Roots Underpins Stress Adaptation during Hypoxia. Plant Physiology 149 (1), pp. 461 - 473 (2009)
70.
Journal Article
Krueger, S.; Niehl, A.; Martin, M. C.; Steinhauser, D.; Donath, A.; Hildebrandt, T.; Romero, L. C.; Hoefgen, R.; Gotor, C.; Hesse, H.: Analysis of cytosolic and plastidic serine acetyltransferase mutants and subcellular metabolite distributions suggests interplay of the cellular compartments for cysteine biosynthesis in Arabidopsis. Plant Cell and Environment 32 (4), pp. 349 - 367 (2009)
71.
Journal Article
Lanquar, V.; Loque, D.; Hormann, F.; Yuan, L. X.; Bohner, A.; Engelsberger, W. R.; Lalonde, S.; Schulze, W. X.; von Wiren, N.; Frommer, W. B.: Feedback Inhibition of Ammonium Uptake by a Phospho-Dependent Allosteric Mechanism in Arabidopsis. Plant Cell 21 (11), pp. 3610 - 3622 (2009)
72.
Journal Article
Larrainzar, E.; Wienkoop, S.; Scherling, C.; Kempa, S.; Ladrera, R.; Arrese-Igor, C.; Weckwerth, W.; Gonzalez, E. M.: Carbon Metabolism and Bacteroid Functioning Are Involved in the Regulation of Nitrogen Fixation in Medicago truncatula Under Drought and Recovery. Molecular Plant-Microbe Interactions 22 (12), pp. 1565 - 1576 (2009)
73.
Journal Article
Lau, S.; Shao, N.; Bock, R.; Juergens, G.; De Smet, I.: Auxin signaling in algal lineages: fact or myth? Trends in Plant Science 14 (4), pp. 182 - 188 (2009)
74.
Journal Article
Lehmann, M.; Schwarzlander, M.; Obata, T.; Sirikantaramas, S.; Burow, M.; Olsen, C. E.; Tohge, T.; Fricker, M. D.; Moller, B. L.; Fernie, A. R. et al.; Sweetlove, L. J.; Laxa, M.: The Metabolic Response of Arabidopsis Roots to Oxidative Stress is Distinct from that of Heterotrophic Cells in Culture and Highlights a Complex Relationship between the Levels of Transcripts, Metabolites, and Flux. Molecular Plant 2 (3), pp. 390 - 406 (2009)
75.
Journal Article
Lippold, F.; Sanchez, D. H.; Musialak-Lange, M.; Schlereth, A.; Scheible, W.-R.; Hincha, D. K.; Udvardi, M. K.: AtMyb41 Regulates Transcriptional and Metabolic Responses to Osmotic Stress in Arabidopsis. Plant Physiology 149 (4), pp. 1761 - 1772 (2009)
76.
Journal Article
Lisec, J.; Steinfath, M.; Meyer, R. C.; Selbig, J.; Melchinger, A. E.; Willmitzer, L.; Altmann, T.: Identification of heterotic metabolite QTL in Arabidopsis thaliana RIL and IL populations. Plant Journal 59 (5), pp. 777 - 788 (2009)
77.
Journal Article
Liu, Y. J.; Nunes-Nesi, A.; Wallstrom, S. V.; Lager, I.; Michalecka, A. M.; Norberg, F. E. B.; Widell, S.; Fredlund, K. M.; Fernie, A. R.; Rasmusson, A. G.: A Redox-Mediated Modulation of Stem Bolting in Transgenic Nicotiana sylvestris Differentially Expressing the External Mitochondrial NADPH Dehydrogenase. Plant Physiology 150 (3), pp. 1248 - 1259 (2009)
78.
Journal Article
Livingston, D. P.; Hincha, D. K.; Heyer, A. G.: Fructan and its relationship to abiotic stress tolerance in plants. Cellular and Molecular Life Sciences 66 (13), pp. 2007 - 2023 (2009)
79.
Journal Article
Lugan, R.; Niogret, M. F.; Kervazo, L.; Larher, F. R.; Kopka, J.; Bouchereau, A.: Metabolome and water status phenotyping of Arabidopsis under abiotic stress cues reveals new insight into ESK1 function. Plant Cell and Environment 32 (2), pp. 95 - 108 (2009)
80.
Journal Article
Lytovchenko, A.; Beleggia, R.; Schauer, N.; Isaacson, T.; Leuendorf, J. E.; Hellmann, H.; Rose, J. K. C.; Fernie, A. R.: Application of GC-MS for the detection of lipophilic compounds in diverse plant tissues. Plant Methods 5, p. 4 (2009)
81.
Journal Article
Marchive, C.; Yehudai-Resheff, S.; Germain, A.; Fei, Z. J.; Jiang, X. S.; Judkins, J.; Wu, H.; Fernie, A. R.; Fait, A.; Stern, D. B.: Abnormal Physiological and Molecular Mutant Phenotypes Link Chloroplast Polynucleotide Phosphorylase to the Phosphorus Deprivation Response in Arabidopsis. Plant Physiology 151 (2), pp. 905 - 924 (2009)
82.
Journal Article
Marusic, C.; Vitale, A.; Pedrazzini, E.; Donini, M.; Frigerio, L.; Bock, R.; Dix, P. J.; McCabe, M. S.; Bellucci, M.; Benvenuto, E.: Plant-based strategies aimed at expressing HIV antigens and neutralizing antibodies at high levels. Nef as a case study. Transgenic Research 18 (4), pp. 499 - 512 (2009)
83.
Journal Article
May, P.; Christian, J. O.; Kempa, S.; Walther, D.: ChlamyCyc: an integrative systems biology database and web-portal for Chlamydomonas reinhardtii. BMC Genomics 10, p. 209 (2009)
84.
Journal Article
Michalska, J.; Zauber, H.; Buchanan, B. B.; Cejudo, F. J.; Geigenberger, P.: NTRC links built-in thioredoxin to light and sucrose in regulating starch synthesis in chloroplasts and amyloplasts. Proceedings of the National Academy of Sciences of the United States of America 106 (24), pp. 9908 - 9913 (2009)
85.
Journal Article
Mrosk, C.; Forner, S.; Hause, G.; Kuester, H.; Kopka, J.; Hause, B.: Composite Medicago truncatula plants harbouring Agrobacterium rhizogenes-transformed roots reveal normal mycorrhization by Glomus intraradices. Journal of Experimental Botany 60 (13), pp. 3797 - 3807 (2009)
86.
Journal Article
Mutwil, M.; Ruprecht, C.; Giorgi, F. M.; Bringmann, M.; Usadel, B.; Persson, S.: Transcriptional Wiring of Cell Wall-Related Genes in Arabidopsis. Molecular Plant 2 (5), pp. 1015 - 1024 (2009)
87.
Journal Article
Myakushina, Y. A.; Milyaeva, E. L.; Romanov, G. A.; Nikiforova, V. Y.: Mutation in LSU4 gene affects flower development in Arabidopsis thaliana. Doklady Biochemistry and Biophysics 428 (1), pp. 257 - 260 (2009)
88.
Journal Article
Naso, A.; Dreyer, I.; Pedemonte, L.; Testa, I.; Gomez-Porras, J. L.; Usai, C.; Mueller-Rueber, B.; Diaspro, A.; Gambale, F.; Picco, C.: The Role of the C-Terminus for Functional Heteromerization of the Plant Channel KDC1. Biophysical Journal 96 (10), pp. 4063 - 4074 (2009)
89.
Journal Article
Nebrich, G.; Herrmann, M.; Hartl, D.; Diedrich, M.; Kreitler, T.; Wierling, C.; Klose, J.; Giavalisco, P.; Zabel, C.; Mao, L.: PROTEOMER: A workflow-optimized laboratory information management system for 2-D electrophoresis-centered proteomics. Proteomics 9 (7), pp. 1795 - 1808 (2009)
90.
Journal Article
Neupert, J.; Bock, R.: Designing and using synthetic RNA thermometers for temperature-controlled gene expression in bacteria. Nature Protocols 4 (9), pp. 1262 - 1273 (2009)
91.
Journal Article
Neupert, J.; Karcher, D.; Bock, R.: Generation of Chlamydomonas strains that efficiently express nuclear transgenes. Plant Journal 57 (6), pp. 1140 - 1150 (2009)
92.
Journal Article
Obel, N.; Erben, V.; Schwarz, T.; Kuehnel, S.; Fodor, A.; Pauly, M.: Microanalysis of Plant Cell Wall Polysaccharides. Molecular Plant 2 (5), pp. 922 - 932 (2009)
93.
Journal Article
Oey, M.; Lohse, M.; Kreikemeyer, B.; Bock, R.: Exhaustion of the chloroplast protein synthesis capacity by massive expression of a highly stable protein antibiotic. Plant Journal 57 (3), pp. 436 - 445 (2009)
94.
Journal Article
Oey, M.; Lohse, M.; Scharff, L. B.; Kreikemeyer, B.; Bock, R.: Plastid production of protein antibiotics against pneumonia via a new strategy for high-level expression of antimicrobial proteins. Proceedings of the National Academy of Sciences of the United States of America 106 (16), pp. 6579 - 6584 (2009)
95.
Journal Article
Osorio, S.; Tohge, T.; Fernie, A. R.: Application of metabolomic profiling for identififying valuable traits in tomato. CAB Reviews: Perspectives in Agriculture, Veterinary Science, Nutrition and Natural Resources 4 (024), pp. 1 - 9 (2009)
96.
Journal Article
Ott, T.; Sullivan, J.; James, E. K.; Flemetakis, E.; Gunther, C.; Gibon, Y.; Ronson, C.; Udvardi, M. K.: Absence of Symbiotic Leghemoglobins Alters Bacteroid and Plant Cell Differentiation During Development of Lotus japonicus Root Nodules. Molecular Plant-Microbe Interactions 22 (7), pp. 800 - 808 (2009)
97.
Journal Article
Pajerowska-Mukhtar, K.; Stich, B.; Achenbach, U.; Ballvora, A.; Lubeck, J.; Strahwald, J.; Tacke, E.; Hofferbert, H. R.; Ilarionova, E.; Bellin, D. et al.; Walkemeier, B.; Basekow, R.; Kersten, B.; Gebhardt, C.: Single Nucleotide Polymorphisms in the Allene Oxide Synthase 2 Gene Are Associated With Field Resistance to Late Blight in Populations of Tetraploid Potato Cultivars. Genetics 181 (3), pp. 1115 - 1127 (2009)
98.
Journal Article
Palmieri, F.; Rieder, B.; Ventrella, A.; Blanco, E.; Do, P. T.; Nunes-Nesi, A.; Trauth, A. U.; Fiermonte, G.; Tjaden, J.; Agrimi, G. et al.; Kirchberger, S.; Paradies, E.; Fernie, A. R.; Neuhaus, H. E.: Molecular Identification and Functional Characterization of Arabidopsis thaliana Mitochondrial and Chloroplastic NAD(+) Carrier Proteins. The Journal of Biological Chemistry 284 (45), pp. 31249 - 31259 (2009)
99.
Journal Article
Pant, B. D.; Musialak-Lange, M.; Nuc, P.; May, P.; Buhtz, A.; Kehr, J.; Walther, D.; Scheible, W.-R.: Identification of Nutrient-Responsive Arabidopsis and Rapeseed MicroRNAs by Comprehensive Real-Time Polymerase Chain Reaction Profiling and Small RNA Sequencing. Plant Physiology 150 (3), pp. 1541 - 1555 (2009)
100.
Journal Article
Pedreschi, R.; Franck, C.; Lammertyn, J.; Erban, A.; Kopka, J.; Hertog, M.; Verlinden, B.; Nicolai, B.: Metabolic profiling of 'Conference' pears under low oxygen stress. Postharvest Biology and Technology 51 (2), pp. 123 - 130 (2009)
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