Journal Article (160)

51.
Journal Article
Golczyk, H.; Musial, K.; Rauwolf, U.; Meurer, J.; Herrmann, R. G.; Greiner, S.: Meiotic events in Oenothera - a non-standard pattern of chromosome behaviour. Genome 51 (11), pp. 952 - 958 (2008)
52.
Journal Article
Greiner, S.; Wang, X.; Herrmann, R. G.; Rauwolf, U.; Mayer, K.; Haberer, G.; Meurer, J.: The complete nucleotide sequences of the 5 genetically distinct plastid genomes of Oenothera, subsection Oenothera: II. A microevolutionary view using bioinformatics and formal genetic data. Molecular Biology and Evolution 25 (9), pp. 2019 - 2030 (2008)
53.
Journal Article
Greiner, S.; Wang, X.; Rauwolf, U.; Silber, M. V.; Mayer, K.; Meurer, J.; Haberer, G.; Herrmann, R. G.: The complete nucleotide sequences of the five genetically distinct plastid genomes of Oenothera, subsection Oenothera: I. Sequence evaluation and plastome evolution. Nucleic Acids Research 36 (7), pp. 2366 - 2378 (2008)
54.
Journal Article
Grigston, J. C.; Osuna, D.; Scheible, W.-R.; Liu, C.; Stitt, M.; Jones, A. M.: D-Glucose sensing by a plasma membrane regulator of G signaling protein, AtRGS1. FEBS Letters 582 (25-26), pp. 3577 - 3584 (2008)
55.
Journal Article
Guy, C.; Kaplan, F.; Kopka, J.; Selbig, J.; Hincha, D. K.: Metabolomics of temperature stress. Physiologia Plantarum 132 (2), pp. 220 - 235 (2008)
56.
Journal Article
Handorf, T.; Christian, N.; Ebenhoeh, O.; Kahn, D.: An environmental perspective on metabolism. Journal of Theoretical Biology 252 (3), pp. 530 - 537 (2008)
57.
Journal Article
Hanikenne, M.; Talke, I. N.; Haydon, M. J.; Lanz, C.; Nolte, A.; Motte, P.; Kroymann, J.; Weigel, D.; Kraemer, U.: Evolution of metal hyperaccumulation required cis-regulatory changes and triplication of HMA4. Nature 453 (7193), pp. 391 - 396 (2008)
58.
Journal Article
Hartmann, S.; Vision, T. J.: Using ESTs for phylogenomics: Can one accurately infer a phylogenetic tree from a gappy alignment? BMC Evolutionary Biology 8, p. 95 (2008)
59.
Journal Article
Heazlewood, J. L.; Durek, P.; Hummel, J.; Selbig, J.; Weckwerth, W.; Walther, D.; Schulze, W. X.: PhosPhAt: a database of phosphorylation sites in Arabidopsis thaliana and a plant-specific phosphorylation site predictor. Nucleic Acids Research 36 (Database issue), pp. D1015 - D1021 (2008)
60.
Journal Article
Hincha, D. K.: Effects of alpha-tocopherol (vitamin E) on the stability and lipid dynamics of model membranes mimicking the lipid composition of plant chloroplast membranes. FEBS Letters 582 (25-26), pp. 3687 - 3692 (2008)
61.
Journal Article
Hincha, D. K.; Rennecke, P.; Oliver, A. E.: Protection of liposomes against fusion during drying by oligosaccharides is not predicted by the calorimetric glass transition temperatures of the dry sugars. European Biophysics Journal with Biophysics Letters 37 (4), pp. 503 - 508 (2008)
62.
Journal Article
Hoefgen, R.; Nikiforova, V. J.: Metabolomics integrated with transcriptomics: assessing systems response to sulfur-deficiency stress. Physiologia Plantarum 132 (2), pp. 190 - 198 (2008)
63.
Journal Article
Hoehenwarter, W.; van Dongen, J. T.; Wienkoop, S.; Steinfath, M.; Hummel, J.; Erban, A.; Sulpice, R.; Regierer, B.; Kopka, J.; Geigenberger, P. et al.; Weckwerth, W.: A rapid approach for phenotype-screening and database independent detection of cSNP/protein polymorphism using mass accuracy precursor alignment. Proteomics 8 (20), pp. 4214 - 4225 (2008)
64.
Journal Article
Huang, C. Y.; Roessner, U.; Eickmeier , I.; Genc, Y.; Callahan, D. L.; Shirley, N.; Langridge, P.; Bacic, A.: Metabolite profiling reveals distinct changes in carbon and nitrogen metabolism in phosphate-deficient barley plants (Hordeum vulgare L.). Plant and Cell Physiology 49 (5), pp. 691 - 703 (2008)
65.
Journal Article
Hufton, A. L.; Groth, D.; Vingron, M.; Lehrach, H.; Poustka, A. J.; Panopoulou, G.: Early vertebrate whole genome duplications were predated by a period of intense genome rearrangement. Genome Research 18 (10), pp. 1582 - 1591 (2008)
66.
Journal Article
Hundertmark, M.; Hincha, D. K.: LEA (Late Embryogenesis Abundant) proteins and their encoding genes in Arabidopsis thaliana. BMC Genomics 9, p. 118 (2008)
67.
Journal Article
Jensen, J. K.; Sorensen, S. O.; Harholt, J.; Geshi, N.; Sakuragi, Y.; Moller, I.; Zandleven, J.; Bernal, A. J.; Jensen, N. B.; Sorensen, C. et al.; Pauly, M.; Beldman, G.; Willats, W. G. T.; Scheller, H. V.: Identification of a xylogalacturonan xylosyltransferase involved in pectin biosynthesis in Arabidopsis. Plant Cell 20 (5), pp. 1289 - 1302 (2008)
68.
Journal Article
Jones, P.; Côté, R. G.; Cho, S. Y.; Klie, S.; Martens, L.; Quinn, A. F.; Thorneycroft, D.; Hermjakob, H.: PRIDE: new developments and new datasets. Nucleic Acids Research (London) 36 (Database issue), pp. D878 - D883 (2008)
69.
Journal Article
Kahlau, S.; Bock, R.: Plastid transcriptomics and translatomics of tomato fruit development and chloroplast-to-chromoplast differentiation: Chromoplast gene expression largely serves the production of a single protein. Plant Cell 20 (4), pp. 856 - 874 (2008)
70.
Journal Article
Kakar, K.; Wandrey, M.; Czechowski, T.; Gaertner, T.; Scheible, W.-R.; Stitt, M.; Torres-Jerez, I.; Xiao, Y.; Redman, J. C.; Wu, H. C. et al.; Cheung, F.; Town, C. D.; Udvardi, M. K.: A community resource for high-throughput quantitative RT-PCR analysis of transcription factor gene expression in Medicago truncatula. Plant Methods 4, p. 18 (2008)
71.
Journal Article
Karcher, D.; Kahlau, S.; Bock, R.: Faithful editing of a tomato-specific mRNA editing site in transgenic tobacco chloroplasts. RNA-A Publication of the RNA Society 14 (2), pp. 217 - 224 (2008)
72.
Journal Article
Kehr, J.; Buhtz, A.: Long distance transport and movement of RNA through the phloem. Journal of Experimental Botany 59 (1), pp. 85 - 92 (2008)
73.
Journal Article
Kempa, S.; Krasensky, J.; Dal Santo, S.; Kopka, J.; Jonak, C.: A Central Role of Abscisic Acid in Stress-Regulated Carbohydrate Metabolism. PLoS One 3 (12), p. e3935 (2008)
74.
Journal Article
Kersten, B.; Nagel, A.; Riano-Pachon, D.M.; Neigenfind, J.; Weber, E.; Wagner, R.; Diehl, S.: Die GABI-Primaerdatenbank GabiPD - Komplexe Integration von GABI-Daten aus Modell- und Nutzpflanzen. GenomXPress: Informationen aus der Deutschen Genomforschung 1, pp. 17 - 19 (2008)
75.
Journal Article
Keurentjes, J. J. B.; Sulpice, R.; Gibon, Y.; Steinhauser, M.-C.; Fu, J. Y.; Koornneef, M.; Stitt, M.; Vreugdenhil, D.: Integrative analyses of genetic variation in enzyme activities of primary carbohydrate metabolism reveal distinct modes of regulation in Arabidopsis thaliana. Genome Biology 9 (8), p. R129 (2008)
76.
Journal Article
Kloosterman, B.; De Koeyer, D.; Griffiths, R.; Flinn, B.; Steuernagel, B.; Scholz, U.; Sonnewald, S.; Sonnewald, U.; Bryan, G. J.; Prat, S. et al.; Banfalvi, Z.; Hammond, J. P.; Geigenberger, P.; Nielsen, K. L.; Visser, R. G. F.; Bachem, C. W. B.: Genes driving potato tuber initiation and growth: identification based on transcriptional changes using the POCI array. Functional & Integrative Genomics 8 (4), pp. 329 - 340 (2008)
77.
Journal Article
Koehl, K. I.; Basler, G.; Lüdemann, A.; Selbig, J.; Walther, D.: A plant resource and experiment management system based on the Golm Plant Database as a basic tool for omics research. Plant Methods 4, p. 11 (2008)
78.
Journal Article
Korn, M.; Peterek, S.; Mock, H.-P.; Heyer, A. G.; Hincha, D. K.: Heterosis in the freezing tolerance, and sugar and flavonoid contents of crosses between Arabidopsis thaliana accessions of widely varying freezing tolerance. Plant, Cell and Environment 31 (6), pp. 813 - 827 (2008)
79.
Journal Article
Koslowsky, S.; Riegler, H.; Bergmueller, E.; Zrenner, R.: Higher biomass accumulation by increasing phosphoribosylpyrophosphate synthetase activity in Arabidopsis thaliana and Nicotiana tabacum. Plant Biotechnology Journal 6 (3), pp. 281 - 294 (2008)
80.
Journal Article
Kruse, K.; Ebenhoeh, O.: Comparing flux balance analysis to network expansion: producibility, sustainability and the scope of compounds. Genome Informatics 20, pp. 91 - 101 (2008)
81.
Journal Article
Kryvych, S.; Nikiforova, V.; Herzog, M.; Perazza, D.; Fisahn, J.: Gene expression profiling of the different stages of Arabidopsis thaliana trichome development on the single cell level. Plant Physiology and Biochemistry 46 (2), pp. 160 - 173 (2008)
82.
Journal Article
Laitinen, R. A.; Ainasoja, M.; Broholm, S. K.; Teeri, T. H.; Elomaa, P.: Identification of target genes for a MYB-type anthocyanin regulator in Gerbera hybrida. Journal of Experimental Botany 59 (13), pp. 3691 - 3703 (2008)
83.
Journal Article
Lange, P. R.; Geserick, C.; Tischendorf, G.; Zrenner, R.: Functions of chloroplastic adenylate kinases in Arabidopsis. Plant Physiology 146 (2), pp. 492 - 504 (2008)
84.
Journal Article
Leboeuf, E.; Immerzeel, P.; Gibon, Y.; Steup, M.; Pauly, M.: High-throughput functional assessment of polysaccharide-active enzymes using matrix-assisted laser desorption/ionization-time-of-flight mass spectrometry as exemplified on plant cell wall polysaccharides. Analytical Biochemistry 373 (1), pp. 9 - 17 (2008)
85.
Journal Article
Lehmann, U.; Wienkoop, S.; Tschoep, H.; Weckwerth, W.: If the antibody fails - a mass Western approach. The Plant Journal 55 (6), pp. 1039 - 1046 (2008)
86.
Journal Article
Lein, W.; Usadel, B.; Stitt, M.; Reindl, A.; Ehrhardt, T.; Sonnewald, U.; Boernke, F.: Large-scale phenotyping of transgenic tobacco plants (Nicotiana tabacum) to identify essential leaf functions. Plant Biotechnology Journal 6 (3), pp. 246 - 263 (2008)
87.
Journal Article
Lejay, L.; Wirth, J.; Pervent, M.; Cross, J. M. F.; Tillard, P.; Gojon, A.: Oxidative pentose phosphate pathway-dependent sugar sensing as a mechanism for regulation of root ion transporters by photosynthesis. Plant Physiology 146 (4), pp. 2036 - 2053 (2008)
88.
Journal Article
Le, M. Q.; Engelsberger, W. R.; Hincha, D. K.: Natural genetic variation in acclimation capacity at sub-zero temperatures after cold acclimation at 4 degrees C in different Arabidopsis thaliana accessions. Cryobiology 57 (2), pp. 104 - 112 (2008)
89.
Journal Article
Levine, L. H.; Kasahara, H.; Kopka, J.; Erban, A.; Fehrle, I.; Kaplan, F.; Zhao, W.; Littell, R. C.; Guy, C.; Wheeler, R. et al.; Sager, J.; Mills, A.; Levine, H. G.: Physiologic and metabolic responses of wheat seedlings to elevated and super-elevated carbon dioxide. Advances in Space Research 42 (12), pp. 1917 - 1928 (2008)
90.
Journal Article
Lieckfeldt, E.; Simon-Rosin, U.; Kose, F.; Zoeller, D.; Schliep, M.; Fisahn, J.: Gene expression profiling of single epidermal, basal and trichome cells of Arabidopsis thaliana. Journal of Plant Physiology 165 (14), pp. 1530 - 1544 (2008)
91.
Journal Article
Lisec, J.; Meyer, R. C.; Steinfath, M.; Redestig, H.; Becher, M.; Witucka-Wall, H.; Fiehn, O.; Torjek, O.; Selbig, J.; Altmann, T. et al.; Willmitzer, L.: Identification of metabolic and biomass QTL in Arabidopsis thaliana in a parallel analysis of RIL and IL populations. Plant Journal 53 (6), pp. 960 - 972 (2008)
92.
Journal Article
Lodha, M.; Schulz-Raffelt, M.; Schroda, M.: A new assay for promoter analysis in Chlamydomonas reveals roles for heat shock elements and the TATA box in HSP70A promoter-mediated activation of transgene expression. Eukaryotic Cell 7 (1), pp. 172 - 176 (2008)
93.
Journal Article
Lohse, M.; Krueger, P.; Hannemann, J.; Nagel, A.; Stitt, M.; Walther, D.; Usadel, B.: Robin - Microarray Experimentanalyse leicht gemacht. GenomXPress: Informationen aus der Deutschen Genomforschung 3, pp. 16 - 17 (2008)
94.
Journal Article
Lüdemann, A.; Strassburg, K.; Erban, A.; Kopka, J.: TagFinder for the quantitative analysis of gas chromatography - mass spectrometry (GC-MS)-based metabolite profiling experiments. Bioinformatics 24 (5), pp. 732 - 737 (2008)
95.
Journal Article
Marczak, L.; Kachlicki, P.; Kozniewski, P.; Skirycz, A.; Krajewski, P.; Stobiecki, M.: Matrix-assisted laser desorption/ionization time-of-flight mass spectrometry monitoring of anthocyanins in extracts from Arabidopsis thaliana leaves. Rapid Communications in Mass Spectrometry 22 (23), pp. 3949 - 3956 (2008)
96.
Journal Article
Matthaeus, F.; Salazar, C.; Ebenhoeh, O.: Biosynthetic potentials of metabolites and their hierarchical organization. PLoS Computational Biology 4 (4), p. e1000049 (2008)
97.
Journal Article
May, P.; Wienkoop, S.; Kempa, S.; Usadel, B.; Christian, N.; Rupprecht, J.; Weiss, J.; Recuenco-Munoz, L.; Ebenhoeh, O.; Weckwerth, W. et al.; Walther, D.: Metabolomics- and proteomics-assisted genome annotation and analysis of the draft metabolic network of Chlamydomonas reinhardtii. Genetics 179 (1), pp. 157 - 166 (2008)
98.
Journal Article
Mazzella, M. A.; Zanor, M. I.; Fernie, A. R.; Casal, J. J.: Metabolic responses to red/far-red ratio and ontogeny show poor correlation with the growth rate of sunflower stems. Journal of Experimental Botany 59 (9), pp. 2469 - 2477 (2008)
99.
Journal Article
McCabe, M. S.; Klaas, M.; Gonzalez-Rabade, N.; Poage, M.; Badillo-Corona, J. A.; Zhou, F.; Karcher, D.; Bock, R.; Gray, J. C.; Dix, P. J.: Plastid transformation of high-biomass tobacco variety Maryland Mammoth for production of human immunodeficiency virus type 1 (HIV-1) p24 antigen. Plant Biotechnology Journal 6 (9), pp. 914 - 929 (2008)
100.
Journal Article
McKhann, H. I.; Gery, C.; Berard, A.; Leveque, S.; Zuther, E.; Hincha, D. K.; De Mita, S.; Brunel, D.; Teoule, E.: Natural variation in CBF gene sequence, gene expression and freezing tolerance in the Versailles core collection of Arabidopsis thaliana. BMC Plant Biology 8, p. 105 (2008)
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