Max Planck Institute of Molecular Plant Physiology

Publications of the institute

Journal Article (3912)

1.

Journal Article

Rodrigues-Salvador, A.; Lana-Costa, J.; Omena-Garcia, R.P.; Batista-Silva, W.; Scossa, F.; Rosado-Souza, L.; Pérez-Díaz, J.L.; Menezes-Silva, P.E.; DaMatta, F.M.; Sulpice, R. et al.; Araújo, W.L.; Zsögön, A.; Fernie, A. R.; Nunes-Nesi, A.: Metabolic shifts during fruit development in pungent and non-pungent peppers. Food Chemistry 375, 131850 (2022)

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2.

Journal Article

Naves, E. R.; Scossa, F.; Araújo, W. L.; Nunes-Nesi, A.; Fernie, A. R.; Zsögön, A.: Heterosis and reciprocal effects for agronomic and fruit traits in Capsicum pepper hybrids. Scientia Horticulturae 295, 110821 (2022)

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3.

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Sreenivasulu, N.; Fernie, A. R.: Diversity: current and prospective secondary metabolites for nutrition and medicine. Current Opinion in Biotechnology 74, pp. 164 - 170 (2022)

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4.

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Stöckl, M.; Claassens, N.; Lindner, S. N.; Klemm, E.; Holtmann, D.: Coupling electrochemical CO2 reduction to microbial product generation – identification of the gaps and opportunities. Current Opinion in Biotechnology 74, pp. 154 - 163 (2022)

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5.

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Chen, M.; Huang, W.; Yin, Z.; Zhang, W.; Kong, Q.; Wu, S.; Li, W.; Bai, Z.; Fernie, A. R.; Huang, X. et al.; Yan, S.: Environmentally-driven metabolite and lipid variations correspond to altered bioactivities of black wolfberry fruit. Food Chemistry 372, 131342 (2022)

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6.

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Balazadeh, S.: A ‘hot’ cocktail: The multiple layers of thermomemory in plants. Current Opinion in Plant Biology 65, 102147 (2022)

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7.

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Boinot, M.; Karakas, E.; Koehl, K. I.; Pagter, M.; Zuther, E.: Cold stress and freezing tolerance negatively affect the fitness of Arabidopsis thaliana accessions under field and controlled conditions. Planta 255 (2), 39 (2022)

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8.

Journal Article

Thieme, S.; Walther, D.: Biclique extension as an effective approach to identify missing links in metabolic compound-protein interaction networks. Bioinformatics advances (2022)

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9.

Journal Article

Mi, J.; Vallarino, J. G.; Petřík, I.; Novák, O.; Correa, S. M.; Kosmacz, M.; Havaux, M.; Rodriguez-Concepcion, M.; Al-Babili, S.; Fernie, A. R. et al.; Skirycz, A.; Moreno, J.C.: A manipulation of carotenoid metabolism influence biomass partitioning and fitness in tomato. Metabolic Engineering (2022)

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10.

Journal Article

Simeoni, F.; Skirycz, A.; Simoni, L.; Castorina, G.; de Souza, L. P.; Fernie, A. R.; Alseekh, S.; Giavalisco, P.; Conti, L.; Tonelli, C. et al.; Galbiati, M.: The AtMYB60 transcription factor regulates stomatal opening by modulating oxylipin synthesis in guard cells. Scientific Reports 12 (1), 533 (2022)

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11.

Journal Article

Klein, H.; Gallagher, J.; Demesa-Arevalo, E.; Abraham-Juárez, M. J.; Heeney, M.; Feil, R.; Lunn, J. E.; Xiao, Y.; Chuck, G.; Whipple, C. et al.; Jackson, D.; Bartlett, M.: Recruitment of an ancient branching program to suppress carpel development in maize flowers. Proceedings of the National Academy of Sciences of the United States of America 119 (2), e2115871119 (2022)

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12.

Journal Article

Fernie, A. R.; Alseekh, S.: Unravelling the molecular networks that regulate kiwifruit flavor. New Phytologist 233 (1), pp. 8 - 10 (2022)

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13.

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Trösch, R.; Ries, F.; Westrich, L. D.; Gao, Y.; Herkt, C.; Hoppstädter, J.; Heck-Roth, J.; Mustas, M.; Scheuring, D.; Choquet, Y. et al.; Räschle, M.; Zoschke, R.; Willmund, F.: Fast and global reorganization of the chloroplast protein biogenesis network during heat acclimation. The Plant Cell (2021)

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14.

Journal Article

Calderan-Rodrigues, M.J.; Luzarowski, M.; Monte Bello, C.C.; Minen, R.I.; Zühlke, B. M.; Nikoloski, Z.; Skirycz, A.; Caldana, C.: Proteogenic Dipeptides Are Characterized by Diel Fluctuations and Target of Rapamycin Complex-Signaling Dependency in the Model Plant Arabidopsis thaliana. Frontiers in Plant Science 12, 758933 (2021)

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15.

Journal Article

Treves, H.; Küken, A.; Arrivault, S.; Ishihara, H.; Hoppe, I.; Erban, A.; Höhne, M.; Moraes, T. A.; Kopka, J.; Szymanski, J. et al.; Nikoloski, Z.; Stitt, M.: Carbon flux through photosynthesis and central carbon metabolism show distinct patterns between algae, C-3 and C-4 plants. Nature Plants (2021)

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16.

Journal Article

Martinez-Seidel, F.; Hsieh, Y.-C.; Walther, D.; Kopka, J.; Firmino, A.: COSNet(i): ComplexOme-Structural Network Interpreter used to study spatial enrichment in metazoan ribosomes. BMC Bioinformatics 22, 605 (2021)

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17.

Journal Article

David, Z.; Swart, C.; Graf, A.; Arrivault, S.; Tillich, M.; Proost, S.; Nikoloski, Z.; Stitt, M.; Bock, R.; Mühlhaus, M. et al.; Boulouis, A.: Topology of the redox network during induction of photosynthesis as revealed by time-resolved proteomics in tobacco. Science Advances 7 (51), eabi8307 (2021)

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18.

Journal Article

Frusciante, S.; Demurtas, O. C.; Sulli, M.; Mini, P.; Aprea, G.; Diretto, G.; Karcher, D.; Bock, R.; Giuliano, G.: Heterologous expression of Bixa orellana cleavage dioxygenase 4–3 drives crocin but not bixin biosynthesis. Plant Physiology (2021)

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19.

Journal Article

Verbančič, J.; Huang, J.J.; McFarlane, H.E.: Analysis of cellulose synthase activity in Arabidopsis using spinning disk microscopy. STAR Protocols 2 (4), 100863 (2021)

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20.

Journal Article

Borghi, G.L.; Arrivault, S.; Günther, M.; Medeiros, D. B.; Dell’Aversana, E.; Fusco, G. M.; Carillo, P.; Ludwig, M.; Fernie, A. R.; Lunn, J. E. et al.; Stitt, M.: Metabolic profiles in C3, C3-C4 intermediate, C4-like and C4 species in the genus Flaveria. Journal of Experimental Botany (2021)

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21.

Journal Article

Shen, S.; Peng, M.; Fang, H.; Wang, Z.; Zhou, S.; Jing, X.; Zhang, M.; Yang, C.; Guo, H.; Li, Y. et al.; Lei, L.; Shi, Y.; Sun, Y.; Liu, X.; Xu, C.; Tohge, T.; Yuan, M.; Fernie, A. R.; Ning, Y.; Wang, G.; Luo, J.: An Oryza-specific hydroxycinnamoyl tyramine gene cluster contributes to enhanced disease resistance. Science Bulletin 66 (23), pp. 2369 - 2380 (2021)

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22.

Journal Article

Qiu, Y.; Köhler, C.: Endosperm evolution by duplicated and neofunctionalized Type I MADS-box transcription factors. Molecular Biology and Evolution (2021)

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23.

Journal Article

Fadoul, H.E.; Rivas, F.J.M.; Neumann, K.; Balazadeh, S.; Fernie, A. R.; Alseekh, S.: Comparative molecular and metabolic profiling of two contrasting wheat cultivars under drought stress. International Journal of Molecular Sciences 22 (24), 13287 (2021)

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24.

Journal Article

Hashemi, S.; Razaghi-Moghadam, Z.; Nikoloski, Z.: Identification of flux trade-offs in metabolic networks. Scientific Reports 11 (1), 23776 (2021)

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25.

Journal Article

Zsögön, A.; Peres, L. E. P.; Xiao, Y.; Yan, J.; Fernie, A. R.: Enhancing crop diversity for food security in the face of climate uncertainty. The Plant Journal (2021)

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26.

Journal Article

Fàbregas, N.; Fernie, A. R.: The reliance of phytohormone biosynthesis on primary metabolite precursors. Journal of Plant Physiology 268, 153589 (2021)

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27.

Journal Article

Qin, K.; Fernie, A. R.; Zhang, Y.: The assembly of super-complexes in the plant chloroplast. Biomolecules 11 (12), 1839 (2021)

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28.

Journal Article

Fàbregas, N.; Fernie, A. R.: The interface of central metabolism with hormone signaling in plants. Current Biology 31 (23), pp. R1535 - R1548 (2021)

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29.

Journal Article

Zhang, Z.; Shi, Q.; Wang, B.; Ma, A.; Wang, Y.; Xue, Q.; Shen, B.; Hamaila, H.; Tang, T.; Qi, X. et al.; Fernie, A. R.; Luo, J.; Li, X.: Jujube metabolome selection determined the edible properties acquired during domestication. The Plant Journal (2021)

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30.

Journal Article

Tiozon, R.J.N.; Bonto, A.; Sreenivasulu, N.: Enhancing the functional properties of rice starch through biopolymer blending for industrial applications: A review. International Journal of Biological Macromolecules 192, pp. 100 - 117 (2021)

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31.

Journal Article

Kasote, D.; Tiozon, R.J.N.; Sartagoda, K. J. D.; Itagi, H.; Roy, P.; Kohli, A.; Regina, A.; Sreenivasulu, N.: Food Processing Technologies to Develop Functional Foods With Enriched Bioactive Phenolic Compounds in Cereals. Frontiers in Plant Science 12, 771276 (2021)

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32.

Journal Article

Curtin, S.; Qi, Y.; Peres, L. E. P.; Fernie, A. R.; Zsögön, A.: Pathways to de novo domestication of crop wild relatives. Plant Physiology (2021)

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33.

Journal Article

Luo, Y.; Zhang, M.; Liu, Y.; Liu, J.; Li, W.; Chen, G.; Peng, Y.; Jin, M.; Wei, W.; Jian, L. et al.; Yan, J.; Fernie, A. R.; Yan, J.: Genetic variation in YIGE1 contributes to ear length and grain yield in maize. New Phytologist (2021)

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34.

Journal Article

Ginsawaeng, O.; Heise, C.; Sangwan, R.; Karcher, D.; Hernández-Sánchez, I.E.; Sampathkumar, A.; Zuther, E.: Subcellular Localization of Seed-Expressed LEA_4 Proteins Reveals Liquid-Liquid Phase Separation for LEA9 and for LEA48 Homo- and LEA42-LEA48 Heterodimers. Biomolecules 11 (12), 1770 (2021)

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35.

Journal Article

Joshi, J.; Hasnain, G.; Logue, T.; Lynch, M.; Wu, S.; Guan, J.; Alseekh, S.; Fernie, A. R.; Hanson, A.; McCarty, D.: A Core Metabolome Response of Maize Leaves Subjected to Long-Duration Abiotic Stresses. Metabolites 11 (11), 797 (2021)

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36.

Journal Article

Candido-Sobrinho, S.; Lima, V.; Freire, F.; de Souza, L. P.; Gago, J.; Fernie, A. R.; Daloso, D.: Metabolism-mediated mechanisms underpin the differential stomatal speediness regulation among ferns and angiosperms. Plant, Cell and Environment 45 (2), pp. 296 - 311 (2021)

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37.

Journal Article

Apelt, F.; Mavrothalassiti, E.; Gupta, S.; Machin, F.; Olas, J. J.; Annunziata, M. G.; Schindelasch, D.; Kragler, F.: Shoot and root single cell sequencing reveals tissue- and daytime-specific transcriptome profiles. Plant Physiology (2021)

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38.

Journal Article

Huc, J.; Dziasek, K.; Pachamuthu, K.; Woh, T.; Köhler, C.; Borges, F.: Bypassing reproductive barriers in hybrid seeds using chemically induced epimutagenesis. The Plant Cell (2021)

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39.

Journal Article

Zhou, Y.; Li, X.; Guo, Q.; Liu, P.; Li, Y.; Wu, C.; Yang, G.; Huang, J.; Zhang, S.; Zheng, C. et al.; Yan, K.: Salt responsive alternative splicing of a RING finger E3 ligase modulates the salt stress tolerance by fine-tuning the balance of COP9 signalosome subunit 5A. PLoS Genetics 17 (11), 1009898. (2021)

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40.

Journal Article

Zhu, F.; Alseekh, S.; Wen, W.; Cheng, Y.; Fernie, A. R.: Genome-wide association studies of Arabidopsis dark-induced senescence reveals signatures of autophagy in metabolic reprogramming. Autophagy (2021)

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41.

Journal Article

Oliver, C.; Annacondia, M. L.; Wang, Z.; Jullien, P. E.; Slotkin, R. K.; Köhler, C.; Martinez, G.: The miRNome function transitions from regulating developmental genes to transposable elements during pollen maturation. The Plant Cell (2021)

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42.

Journal Article

Machado, M.; Vaz, M. G. M. V.; Bromke, M. A.; Rosa, R. M.; Covell, L.; de Souza, L. P.; Rocha, D. I.; Martins, M. A.; Araújo, W. L.; Szymański, J. et al.; Nunes-Nesi, A.: Metabolic stability of freshwater Nitzschia palea strains under silicon stress associated with triacylglycerol accumulation. Algal Research 60, 102554 (2021)

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43.

Journal Article

Gabriel, C.; Fernhout, J.-J.; Fichtner, F.; Feil, R.; Lunn, J. E.; Kossmann, J.; Lloyd, J. R.; van der Vyver, C.: Genetic manipulation of trehalose-6-phosphate synthase results in changes in the soluble sugar profile in transgenic sugarcane stems. Plant Direct 5 (11), e358 (2021)

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44.

Journal Article

da Fonseca-Pereira, P.; Pham, P. A.; Cavalcanti, J. H. F.; Omena-Garcia, R. P.; Barros, J. A. S.; Rosado-Souza, L.; Vallarino, J. G.; Mutwil, M.; Avin-Wittenberg, T.; Nunes-Nesi, A. et al.; Fernie, A. R.; Araújo, W. L.: The Arabidopsis electron-transfer flavoprotein:ubiquinone oxidoreductase is required during normal seed development and germination. The Plant Journal (2021)

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45.

Journal Article

Del-Saz, N. F.; Douthe, C.; Carriquí, M.; Ortíz, J.; Sanhueza, C.; Rivas-Medina, A.; McDonald, A.; Fernie, A. R.; Ribas-Carbo, M.; Gago, J. et al.; Florez-Sarasa, I.; Flexas, J.: Different Metabolic Roles for Alternative Oxidase in Leaves of Palustrine and Terrestrial Species. Frontiers in Plant Science 12, 752795 (2021)

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46.

Journal Article

Wang, S.; Xiao, Y.; Zhou, Z.-W.; Yuan, J.; Guo, H.; Yang, Z.; Yang, J.; Sun, P.; Sun, L.; Deng, Y. et al.; Xie, W.-Z.; Song, J.-M.; Qamar, M. T. u.; Xia, W.; Liu, R.; Gong, S.; Wang, Y.; Wang, F.; Liu, X.; Fernie, A. R.; Wang, X.; Fan, H.; Chen, L.-L.; Luo, J.: High-quality reference genome sequences of two coconut cultivars provide insights into evolution of monocot chromosomes and differentiation of fiber content and plant height. Genome Biology: Biology for the Post-Genomic Era 22 (1), 304 (2021)

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47.

Journal Article

Garg, V.; Dudchenko, O.; Wang, J.; Khan, A.W.; Gupta, S.; Kaur, P.; Han, K.; Saxena, R.K.; Kale, S.M.; Pham, M. et al.; Yu, J.; Chitikineni, A.; Zhang, Z.; Fan, G.; Lui, C.; Valluri, V.; Meng, F.; Bhandari, A.; Liu, X.; Yang, T.; Chen, H.; Valliyodan, B.; Roorkiwal, M.; Shi, C.; Yang, H.B.; Durand, N.C.; Pandey, M.K.; Li, G.; Barmukh, R.; Wang, X.; Chen, X.; Lam, H.-M.; Jiang, H.; Zong, X.; Liang, X.; Liu, X.; Liao, B.; Guo, B.; Jackson, S.; Nguyen, H.T.; Zhuang, W.; Shubo, W.; Wang, X.; Aiden, E.L.; Bennetzen, J.L.; Varshney, R.K.: Chromosome-length genome assemblies of six legume species provide insights into genome organization, evolution, and agronomic traits for crop improvement. Journal of Advanced Research (2021)

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48.

Journal Article

Dong, S.; Tarkowska, D.; Sedaghatmehr, M.; Welsch, M.; Gupta, S.; Mueller-Roeber, B.; Balazadeh, S.: The HB40-JUB1 transcriptional regulatory network controls gibberellin homeostasis in Arabidopsis. Molecular Plant (2021)

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49.

Journal Article

Wagner, M.; Zhang, B.; Tauffenberger, A.; Schroeder, F.C.; Skirycz, A.: Experimental methods for dissecting the terraincognita of protein-metabolite interactomes. Current Opinion in Systems Biology 28, 100403 (2021)

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50.

Journal Article

Jiang, X.; Zhang, W.; Fernie, A. R.; Wen, W.: Combining novel technologies with interdisciplinary basic research to enhance horticultural crops. The Plant Journal 109 (1), pp. 35 - 46 (2021)

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