Publications of the MPI

3451.

Journal Article

Schulze, W. X.; Deng, L.; Mann, M.: Phosphotyrosine interactome of the ErbB-receptor kinase family. Molecular Systems Biology 1, pp. 2005 - 2008 (2005)

MPG.PuRe

DOI

3452.

Journal Article

Schulze, W. X.; Gleixner, G.; Kaiser, K.; Guggenberger, G.; Mann, M.; Schulze, E.-D.: A proteomic fingerprint of dissolved organic carbon and of soil particles. Oecologia 142 (3), pp. 335 - 343 (2005)

MPG.PuRe

DOI

3453.

Journal Article

Sharma, R. K.; Bock, R.; Bansal, K. C. (.c.: Plastid transformation: Safer alternative to transgenic plants. Physiology and Molecular Biology of Plants 11 (2), pp. 179 - 185 (2005)

MPG.PuRe

3454.

Journal Article

Skirycz, A.; Widrych, A.; Szopa, J.: Expression of human dopamine receptor in potato (Solanum tuberosum) results in altered tuber carbon metabolism. BMC Plant Biology 5, 1 (2005)

MPG.PuRe

DOI

3455.

Journal Article

Steffen, R.; Kelly, A. A.; Huyer, J.; Doermann, P.; Renger, G.: Investigations on the reaction pattern of photosystem II in leaves from Arabidopsis thaliana wild type plants and mutants with genetically modified lipid content. Biochemistry 44 (9), pp. 3134 - 3142 (2005)

MPG.PuRe

DOI

3456.

Journal Article

Studart-Guimaraes, C.; Gibon, Y.; Frankel, N.; Wood, C. C.; Zanor, M. I.; Fernie, A. R.; Carrari, F.: Identification and characterisation of the alpha and beta subunits of succinyl CoA ligase of tomato. Plant Molecular Biology 59 (5), pp. 781 - 791 (2005)

MPG.PuRe

DOI

3457.

Journal Article

Thieme, F.; Koebnik, R.; Bekel, T.; Berger, C.; Boch, J.; Buttner, D.; Caldana, C.; Gaigalat, L.; Goesmann, A.; Kay, S. et al.; Kirchner, O.; Lanz, C.; Linke, B.; McHardy, A.; Meyer, F.; Mittenhuber, G.; Nies, D.; Niesbach-Klosgen, U.; Patschkowski, T.; Ruckert, C.; Rupp, O.; Schneiker, S.; Schuster, S.; Vorholter, F.; Weber, E.; Puhler, A.; Bonas, U.; Bartels, D.; Kaiser, O.: Insights into genome plasticity and pathogenicity of the plant pathogenic bacterium Xanthomonas campestris pv. vesicatoria revealed by the complete genome sequence. Journal of Bacteriology 187 (21), pp. 7254 - 7266 (2005)

MPG.PuRe

DOI

3458.

Journal Article

Urbanczyk-Wochniak, E.; Baxter, C.; Kolbe, A.; Kopka, J.; Sweetlove, L. J.; Fernie, A. R.: Profiling of diurnal patterns of metabolite and transcript abundance in potato (Solanum tuberosum) leaves. Planta 221 (6), pp. 891 - 903 (2005)

MPG.PuRe

DOI

3459.

Journal Article

Urbanczyk-Wochniak, E.; Fernie, A. R.: Metabolic profiling reveals altered nitrogen nutrient regimes have diverse effects on the metabolism of hydroponically-grown tomato (Solanum lycopersicum) plants. Journal of Experimental Botany 56 (410), pp. 309 - 321 (2005)

MPG.PuRe

DOI

3460.

Journal Article

Usadel, B.; Kuschinsky, A. M.; Steinhauser, D.; Pauly, M.: Transcriptional co-response analysis as a tool to identify new components of the wall biosynthetic machinery. Plant Biosystems 139 (1), pp. 69 - 73 (2005)

MPG.PuRe

DOI

3461.

Journal Article

Vissenberg, K.; Fry, S. C.; Pauly, M.; Hofte, H.; Verbelen, J. P.: XTH acts at the microfibril-matrix interface during cell elongation. Journal of Experimental Botany 56 (412), pp. 673 - 683 (2005)

MPG.PuRe

DOI

Full

3462.

Journal Article

Welthagen, W.; Shellie, R. A.; Spranger, J.; Ristow, M.; Zimmermann, R.; Fiehn, O.: Comprehensive two-dimensional gas chromatography-time-of-flight mass spectrometry (GC x GC-TOF) for high resolution metabolomics: biomarker discovery on spleen tissue extracts of obese NZO compared to lean C57BL/6 mice. Metabolomics 1 (1), pp. 65 - 73 (2005)

MPG.PuRe

DOI

3463.

Journal Article

Willmund, F.; Schroda, M.: HEAT SHOCKPROTEIN 90C is a bona fide Hsp90 that interacts with plastidic HSP70B in Chlamydomonas reinhardtii. Plant Physiology 138 (4), pp. 2310 - 2322 (2005)

MPG.PuRe

DOI

3464.

Journal Article

Wolschin, F.; Lehmann, U.; Glinski, M.; Weckwerth, W.: An integrated strategy for identification and relative quantification of site-specific protein phosphorylation using liquid chromatography coupled to MS(2)/MS(3). Rapid Communications in Mass Spectrometry 19 (24), pp. 3626 - 3632 (2005)

MPG.PuRe

DOI

3465.

Journal Article

Wolschin, F.; Weckwerth, W.: Combining metal oxide affinity chromatography (MOAC) and selective mass spectrometry for robust identification of in vivo protein phosphorylation sites. Plant Methods 1 (1), p. 9 (2005)

MPG.PuRe

DOI

Full

3466.

Journal Article

Wolschin, F.; Wienkoop, S.; Weckwerth, W.: Enrichment of phosphorylated proteins and peptides from complex mixtures using metal oxide/hydroxide affinity chromatography (MOAC). Proteomics 5 (17), pp. 4389 - 4397 (2005)

MPG.PuRe

DOI

3467.

Journal Article

Wolski, W. E.; Lalowski, M.; Martus, P.; Herwig, R.; Giavalisco, P.; Gobom, J.; Sickmann, A.; Lehrach, H.; Reinert, K.: Transformation and other factors of the peptide mass spectrometry pairwise peak-list comparison process. BMC Bioinformatics 6, p. 285 (2005)

MPG.PuRe

DOI

Full

3468.

Journal Article

Xu, J.; Brearley, C. A.; Lin, W. H.; Wang, Y.; Ye, R.; Mueller-Roeber, B.; Xu, Z. H.; Xue, H.-W.: A role of Arabidopsis inositol polyphosphate kinase, AtIPK2 alpha, in pollen germination and root growth. Plant Physiology 137 (1), pp. 94 - 103 (2005)

MPG.PuRe

DOI

3469.

Journal Article

Yanai, I.; Benjamin, H.; Shmoish, M.; Chalifa-Caspi, V.; Shklar, M.; Ophir, R.; Bar-Even, A.; Horn-Saban, S.; Safran, M.; Domany, E. et al.; Lancet, D.; Shmueli, O.: Genome-wide midrange transcription profiles reveal expression level relationships in human tissue specification. Bioinformatics 21 (5), pp. 650 - 659 (2005)

MPG.PuRe

DOI

3470.

Journal Article

Zywicki, B.; Catchpole, G.; Draper, J.; Fiehn, O.: Comparison of rapid liquid chromatography-electrospray ionization-tandem mass spectrometry methods for determination of glycoalkaloids in transgenic field-grown potatoes. Analytical Biochemistry 336 (2), pp. 178 - 186 (2005)

MPG.PuRe

DOI

3471.

Journal Article

Hennig, L.; Gruissem, W.; Grossniklaus, U.; Köhler, C.: Transcriptional Programs of Early Reproductive Stages in Arabidopsis. Plant Physiology 135 (3), pp. 1765 - 1775 (2004)

MPG.PuRe

DOI

3472.

Journal Article

Collinge, M. A.; Spillane, C.; Köhler, C.; Gheyselinck, J.; Grossniklaus, U.: Genetic Interaction of an Origin Recognition Complex Subunit and the Polycomb Group Gene MEDEA during Seed Development. Plant Cell 16 (4), pp. 1035 - 1046 (2004)

MPG.PuRe

DOI

3473.

Journal Article

Page, D. R.; Köhler, C.; da Costa-Nunes; A., J.; Baroux, C.; Moore, J. M.; Grossniklaus, U.: Intrachromosomal excision of a hybrid Ds element induces large genomic deletions in Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America 101 (9), pp. 2969 - 2974 (2004)

MPG.PuRe

DOI

3474.

Journal Article

Becher, M.; Talke, I. N.; Krall, L.; Kraemer, U.: Cross-species microarray transcript profiling reveals high constitutive expression of metal homeostasis genes in shoots of the zinc hyperaccumulator Arabidopsis halleri. Plant Journal 37 (2), pp. 251 - 268 (2004)

MPG.PuRe

DOI

3475.

Journal Article

Becker, D.; Geiger, D.; Dunkel, M.; Roller, A.; Bertl, A.; Latz, A.; Carpaneto, A.; Dietrich, P.; Roelfsema, M. R. G.; Voelker, C. et al.; Schmidt, D.; Mueller-Roeber, B.; Czempinski, K.; Hedrich, R.: AtTPK4, an Arabidopsis tandem-pore K+ channel, poised to control the pollen membrane voltage in a pH- and Ca2+-dependent manner. Proceedings of the National Academy of Sciences of the United States of America 101 (44), pp. 15621 - 15626 (2004)

MPG.PuRe

DOI

3476.

Journal Article

Bender-Machado, L.; Bauerlein, M.; Carrari, F.; Schauer, N.; Lytovchenko, A.; Gibon, Y.; Kelly, A. A.; Loureiro, M. E.; Muller-Rober, B.; Willmitzer, L. et al.; Fernie, A. R.: Expression of a yeast acetyl CoA hydrolase in the mitochondrion of tobacco plants inhibits growth and restricts photosynthesis. Plant Molecular Biology 55 (5), pp. 645 - 662 (2004)

MPG.PuRe

DOI

3477.

Journal Article

Bino, R. J.; Hall, R. D.; Fiehn, O.; Kopka, J.; Saito, K.; Draper, J.; Nikolau, B. J.; Mendes, P.; Roessner-Tunali, U.; Beale, M. H. et al.; Trethewey, R. N.; Lange, B. M.; Wurtele, E. S.; Sumner, L. W.: Potential of metabolomics as a functional genomics tool. Trends in Plant Science 9 (9), pp. 418 - 425 (2004)

MPG.PuRe

DOI

3478.

Journal Article

Boivin, K.; Acarkan, A.; Mbulu, R. S.; Clarenz, O.; Schmidt, R.: The Arabidopsis genome sequence as a tool for genome analysis in Brassicaceae. A comparison of the Arabidopsis and Capsella rubella genomes. Plant Physiology 135 (2), pp. 735 - 744 (2004)

MPG.PuRe

DOI

3479.

Journal Article

Buhtz, A.; Kolasa, A.; Arlt, K.; Walz, C.; Kehr, J.: Xylem sap protein composition is conserved among different plant species. Planta 219 (4), pp. 610 - 618 (2004)

MPG.PuRe

DOI

3480.

Journal Article

Castleden, C. K.; Aoki, N.; Gillespie, V. J.; MacRae, E. A.; Quick, W. P.; Buchner, P.; Foyer, C. H.; Furbank, R. T.; Lunn, J. E.: Evolution and function of the sucrose-phosphate synthase gene families in wheat and other grasses. Plant Physiology 135 (3), pp. 1753 - 1764 (2004)

MPG.PuRe

DOI

3481.

Journal Article

Clark, G. T.; Zuther, E.; Outred, H. A.; McManus, M. T.; Heyer, A. G.: Tissue-specific changes in remobilisation of fructan in the xerophytic tussock species Festuca novae-zelandiae in response to a water deficit. Functional Plant Biology 31 (4), pp. 377 - 389 (2004)

MPG.PuRe

DOI

3482.

Journal Article

Colditz, F.; Nyamsuren, O.; Niehaus, K.; Eubel, H.; Braun, H. P.; Krajinski, F.: Proteomic approach: Identification of Medicago truncatula proteins induced in roots after infection with the pathogenic oomycete Aphanomyces euteiches. Plant Molecular Biology 55 (1), pp. 109 - 120 (2004)

MPG.PuRe

DOI

3483.

Journal Article

Coll-Garcia, D.; Mazuch, J.; Altmann, T.; Muessig, C.: EXORDIUM regulates brassinosteroid-responsive genes. FEBS Letters 563 (1-3), pp. 82 - 86 (2004)

MPG.PuRe

DOI

3484.

Journal Article

Cook, D.; Fowler, S.; Fiehn, O.; Thomashow, M. F.: A prominent role for the CBF cold response pathway in configuring the low-temperature metabolome of Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America 101 (42), pp. 15243 - 15248 (2004)

MPG.PuRe

DOI

3485.

Journal Article

Czechowski, T.; Bari, R. P.; Stitt, M.; Scheible, W.-R.; Udvardi, M. K.: Real-time RT-PCR profiling of over 1400 Arabidopsis transcription factors: unprecedented sensitivity reveals novel root- and shoot-specific genes. Plant Journal 38 (2), pp. 366 - 379 (2004)

MPG.PuRe

DOI

3486.

Journal Article

D'Apuzzo, E.; Rogato, A.; Simon-Rosin, U.; El Alaoui, H.; Barbulova, A.; Betti, M.; Dimou, M.; Katinakis, P.; Marquez, A.; Marini, A. et al.; Udvardi, M. K.; Chiurazzi, M.: Characterization of three functional high-affinity ammonium transporters in Lotus japonicus with differential transcriptional regulation spatial expression. Plant Physiology 134 (4), pp. 1763 - 1774 (2004)

MPG.PuRe

DOI

3487.

Journal Article

Daub, C. O.; Steuer, R.; Selbig, J.; Kloska, S.: Estimating mutual information using B-spline functions - an improved similarity measure for analysing gene expression data. BMC Bioinformatics 5, p. 118 (2004)

MPG.PuRe

DOI

Full

3488.

Journal Article

de Souza, A.; Takita, M.; Coletta, H.; Caldana, C.; Yanai, G.; Muto, N.; de Oliveira, R.; Nunes, L.; Machado, M.: Gene expression profile of the plant pathogen Xylella fastidiosa during biofilm formation in vitro. FEMS Microbiology Letters 237 (2), pp. 341 - 353 (2004)

MPG.PuRe

DOI

3489.

Journal Article

Debnam, P. M.; Fernie, A. R.; Leisse, A.; Golding, A.; Bowsher, C. G.; Grimshaw, C.; Knight, J. S.; Emes, M. J.: Altered activity of the P2 isoform of plastidic glucose 6-phosphate dehydrogenase in tobacco (Nicotiana tabacum cv. Samsun) causes changes in carbohydrate metabolism and response to oxidative stress in leaves. Plant Journal 38 (1), pp. 49 - 59 (2004)

MPG.PuRe

DOI

3490.

Journal Article

Desbrosses, G.; Kopka, C.; Ott, T.; Udvardi, M. K.: Lotus japonicus LjKUP is induced late during nodule development and encodes a potassium transporter of the plasma membrane. Molecular Plant-Microbe Interactions 17 (7), pp. 789 - 797 (2004)

MPG.PuRe

DOI

3491.

Journal Article

Drager, D. B.; Desbrosses-Fonrouge, A.-G.; Krach, C.; Chardonnens, A. N.; Meyer, R. C.; Saumitou-Laprade, P.; Kraemer, U.: Two genes encoding Arabidopsis halleri MTP1 metal transport proteins co-segregate with zinc tolerance and account for high MTP1 transcript levels. Plant Journal 39 (3), pp. 425 - 439 (2004)

MPG.PuRe

DOI

3492.

Journal Article

Dreyer, I.; Poree, F.; Schneider, A.; Mittelstadt, J.; Bertl, A.; Sentenac, H.; Thibaud, J. B.; Mueller-Roeber, B.: Assembly of plant Shaker-like K-out channels requires two distinct sites of the channel alpha-subunit. Biophysical Journal 87 (2), pp. 858 - 872 (2004)

MPG.PuRe

DOI

3493.

Journal Article

Ebenhoeh, O.; Handorf, T.; Heinrich, R.: Structural Analysis of Expanding Metabolic Networks. Genome Informatics 15 (1), pp. 35 - 45 (2004)

MPG.PuRe

3494.

Journal Article

Fettke, J.; Eckermann, N.; Poeste, S.; Pauly, M.; Steup, M.: The glycan substrate of the cytosolic (Pho 2) phosphorylase isozyme from Pisum sativum L.: identification, linkage analysis and subcellular localization. Plant Journal 39 (6), pp. 933 - 946 (2004)

MPG.PuRe

DOI

3495.

Journal Article

Fiebig, A.; Stegemann, S.; Bock, R.: Rapid evolution of RNA editing sites in a small non-essential plastid gene. Nucleic Acids Research 32 (12), pp. 3615 - 3622 (2004)

MPG.PuRe

DOI

3496.

Journal Article

Fisahn, J.; Herde, O.; Willmitzer, L.; Pena-Cortes, H.: Analysis of the transient increase in cytosolic Ca2+ during the action potential of higher plants with high temporal resolution: Requirement of Ca2+ transients for induction of jasmonic acid biosynthesis and PINII gene expression. Plant and Cell Physiology 45 (4), pp. 456 - 459 (2004)

MPG.PuRe

DOI

3497.

Journal Article

Flemetakis, E.; Efrose, R. C.; Desbrosses, G.; Dimou, M.; Delis, C.; Aivalakis, G.; Udvardi, M. K.; Katinakis, P.: Induction and spatial organization of polyamine biosynthesis during nodule development in Lotus japonicus. Molecular Plant-Microbe Interactions 17 (12), pp. 1283 - 1293 (2004)

MPG.PuRe

DOI

3498.

Journal Article

Fridman, E.; Carrari, F.; Liu, Y. S.; Fernie, A. R.; Zamir, D.: Zooming in on a quantitative trait for tomato yield using interspecific introgressions. Science 305 (5691), pp. 1786 - 1789 (2004)

MPG.PuRe

DOI

3499.

Journal Article

Gaude, N.; Tippmann, H.; Flemetakis, E.; Katinakis, P.; Udvardi, M. K.; Doermann, P.: The galactolipid digalactosyldiacylglycerol accumulates in the peribacteroid membrane of nitrogen-fixing nodules of soybean and Lotus. Journal of Biological Chemistry 279 (33), pp. 34624 - 34630 (2004)

MPG.PuRe

DOI

3500.

Journal Article

Geigenberger, P.; Regierer, B.; Lytovchenko, A.; Leisse, A.; Schauer, N.; Springer, F.; Kossmann, J.; Fernie, A. R.: Heterologous expression of a ketohexokinase in potato plants leads to inhibited rates of photosynthesis, severe growth retardation and abnormal leaf development. Planta 218 (4), pp. 569 - 578 (2004)

MPG.PuRe

DOI

Journal Article (4286)