Journal Article (172)

101.
Journal Article
Moreno-Romero, J.; Santos-Gonzalez, J.; Hennig, L.; Köhler, C.: Applying the INTACT method to purify endosperm nuclei and to generate parental-specific epigenome profiles. Nature Protocols 12 (2), pp. 238 - 254 (2017)
102.
Journal Article
Moreno, J.C.; Tiller, N.; Diez, M.; Karcher, D.; Tillich, M.; Schöttler, M. A.; Bock, R.: Generation and characterization of a collection of knock-down lines for the chloroplast Clp protease complex in tobacco. Journal of Experimental Botany 68 (9), pp. 2199 - 2218 (2017)
103.
Journal Article
Naseri, G.; Balazadeh, S.; Machens, F.; Kamranfar, I.; Messerschmidt, K.; Mueller-Roeber, B.: Plant-Derived Transcription Factors for Orthologous Regulation of Gene Expression in the Yeast Saccharomyces cerevisiae. ACS Synthetic Biology 6 (9), pp. 1742 - 1756 (2017)
104.
Journal Article
Nelson, D. R.; Khraiwesh, B.; Fu, W.; Alseekh, S.; Jaiswal, A.; Chaiboonchoe, A.; Hazzouri, K. M.; O'Connor, M. J.; Butterfoss, G. L.; Drou, N. et al.; Rowe, J. D.; Harb, J.; Fernie, A. R.; Gunsalus, K. C.; Salehi-Ashtiani, K.: The genome and phenome of the green alga Chloroidium sp. UTEX 3007 reveal adaptive traits for desert acclimatization. eLife 6, e25783 (2017)
105.
Journal Article
Ntatsi, G.; Savvas, D.; Papasotiropoulos, V.; Katsileros, A.; Zrenner, R. M.; Hincha, D. K.; Zuther, E.; Schwarz, D.: Rootstock Sub-Optimal Temperature Tolerance Determines Transcriptomic Responses after Long-Term Root Cooling in Rootstocks and Scions of Grafted Tomato Plants. Frontiers in Plant Science 8, 911 (2017)
106.
Journal Article
Obata, T.; Rosado-Souza, L.; Fernie, A. R.: Coupling Radiotracer Experiments with Chemical Fractionation for the Estimation of Respiratory Fluxes. Plant Respiration and Internal Oxygen: Methods and Protocols, pp. 17 - 30 (2017)
107.
Journal Article
Omena-Garcia, R. P.; Araujo, W. L.; Gibon, Y.; Fernie, A. R.; Nunes-Nesi, A.: Measurement of Tricarboxylic Acid Cycle Enzyme Activities in Plants. Plant Respiration and Internal Oxygen: Methods and Protocols, pp. 167 - 182 (2017)
108.
Journal Article
Peng, M.; Shahzad, R.; Gul, A.; Subthain, H.; Shen, S.; Lei, L.; Zheng, Z.; Zhou, J.; Lu, D.; Wang, S. et al.; Nishawy, E.; Liu, X.; Tohge, T.; Fernie, A. R.; Luo, J.: Differentially evolved glucosyltransferases determine natural variation of rice flavone accumulation and UV-tolerance. Nature Communications 8, 1975 (2017)
109.
Journal Article
Pick, U.; Avidan, O.: Triacylglycerol is produced from starch and polar lipids in the green alga Dunaliella tertiolecta. Journal of Experimental Botany 68 (17), pp. 4939 - 4950 (2017)
110.
Journal Article
Ploetner, B.; Nurmi, M.; Fischer, A.; Watanabe, M.; Schneeberger, K.; Holm, S.; Vaid, N.; Schöttler, M. A.; Walther, D.; Hoefgen, R. et al.; Weigel, D.; Laitinen, R.: Chlorosis caused by two recessively interacting genes reveals a role of RNA helicase in hybrid breakdown in Arabidopsis thaliana. The Plant Journal 91 (2), pp. 251 - 262 (2017)
111.
Journal Article
Poplawski, P.; Tohge, T.; Boguslawska, J.; Rybicka, B.; Tanski, Z.; Trevino, V.; Fernie, A. R.; Piekielko-Witkowska, A.: Integrated transcriptomic and metabolomic analysis shows that disturbances in metabolism of tumor cells contribute to poor survival of RCC patients. Biochimica et Biophysica Acta (BBA) - Molecular Basis of Disease 1863 (3), pp. 744 - 752 (2017)
112.
Journal Article
Prodhan, M. A.; Jost, R.; Watanabe, M.; Hoefgen, R.; Lambers, H.; Finnegan, P. M.: Tight control of sulfur assimilation: an adaptive mechanism for a plant from a severely phosphorus-impoverished habitat. New Phytologist 215 (3), pp. 1068 - 1079 (2017)
113.
Journal Article
Rahmoune, B.; Morsli, A.; Khelifi-Slaoui, M.; Khelifi, L.; Strueh, A.; Erban, A.; Kopka, J.; Prell, J.; van Dongen, J. T.: Isolation and characterization of three new PGPR and their effects on the growth of Arabidopsis and Datura plants. Journal of Plant Interaction 12 (1), pp. 1 - 6 (2017)
114.
Journal Article
Robaina-Estévez, S.; Daloso, D. M.; Zhang, Y.; Fernie, A. R.; Nikoloski, Z.: Resolving the central metabolism of Arabidopsis guard cells. Scientific Reports 7, 8307 (2017)
115.
Journal Article
Romero-Munar, A.; Del-Saz, N. F.; Ribas-Carbó, M.; Flexas, J.; Baraza, E.; Florez-Sarasa, I. D.; Fernie, A. R.; Gulías, J.: Arbuscular mycorrhizal symbiosis with Arundo donax decreases root respiration and increases both photosynthesis and plant biomass accumulation. Plant Cell Environment 40 (7), pp. 1115 - 1126 (2017)
116.
Journal Article
Rotsch, A.H.; Kopka, J.; Feussner, I.; Ischebeck, T.: Central metabolite and sterol profiling divides tobacco male gametophyte development and pollen tube growth into eight metabolic phases. The Plant Journal 92 (1), pp. 129 - 146 (2017)
117.
Journal Article
Rudack, K.; Seddig, S.; Sprenger, H.; Koehl, K. I.; Uptmoor, R.; Ordon, F.: Drought stress-induced changes in starch yield and physiological traits in potato. Journal of Agronomy and Crop Science 203 (6), pp. 494 - 505 (2017)
118.
Journal Article
Ruf, S.; Bock, R.: Loopholes for smuggling DNA into pollen. Nature Plants 3 (12), pp. 918 - 919 (2017)
119.
Journal Article
Ru, L.; Osorio, S.; Wang, L.; Fernie, A. R.; Patrick, J.W.; Ruan, Y.-L.: Transcriptomic and metabolomics responses to elevated cell wall invertase activity during tomato fruit set. Journal of Experimental Botany 68 (15), pp. 4263 - 4279 (2017)
120.
Journal Article
Ruprecht, C.; Lohaus, R.; Vanneste, K.; Mutwil, M.; Nikoloski, Z.; Van de Peer, Y.; Persson, S.: Revisiting ancestral polyploidy in plants. Science Advances 3 (7), e1603195 (2017)
121.
Journal Article
Ruprecht, C.; Proost, S.; Hernandez-Coronado, M.; Ortiz-Ramirez, C.; Lang, D.; Rensing, S. A.; Becker, J. D.; Vandepoele, K.; Mutwil, M.: Phylogenomic analysis of gene co-expression networks reveals the evolution of functional modules. The Plant Journal 90 (3), pp. 447 - 465 (2017)
122.
Journal Article
Ruprecht, C.; Vaid, N.; Proost, S.; Persson, S.; Mutwil, M.: Beyond Genomics: Studying Evolution with Gene Coexpression Networks. Trends in Plant Science 22 (4), pp. 298 - 307 (2017)
123.
Journal Article
Salem, M.A.; Li, Y.; Wiszniewski, A.A.G.; Giavalisco, P.: Regulatory-associated protein of TOR (RAPTOR) alters the hormonal and metabolic composition of Arabidopsis seeds, controlling seed morphology, viability and germination potential. The Plant Journal 92 (4), pp. 525 - 545 (2017)
124.
Journal Article
Santelia, D.; Lunn, J. E.: Transitory starch metabolism in guard cells: unique features for a unique function. Plant Physiology 174 (2), pp. 539 - 549 (2017)
125.
Journal Article
Schaker, P. D. C.; Peters, L. P.; Cataldi, T. R.; Labate, C. A.; Caldana, C.; Monteiro-Vitorello, C. B.: Metabolome Dynamics of Smutted Sugarcane Reveals Mechanisms Involved in Disease Progression and Whip Emission. Frontiers in Plant Science 8, 882 (2017)
126.
Journal Article
Scharff, L. B.; Ehrnthaler, M.; Janowski, M.; Childs, L. H.; Hasse, C.; Gremmels, J.; Ruf, S.; Zoschke, R.; Bock, R.: Shine-Dalgarno Sequences Play an Essential Role in the Translation of Plastid mRNAs in Tobacco. Plant Cell 29 (12), pp. 3085 - 3101 (2017)
127.
Journal Article
Schmidt, M. H. -.; Vogel, A.; Denton, A. K.; Istace, B.; Wormit, A.; van de Geest, H.; Bolger, M. E.; Alseekh, S.; Mass, J.; Pfaff, C. et al.; Schurr, U.; Chetelat, R.; Maumus, F.; Aury, J.-M.; Koren, S.; Fernie, A. R.; Zamir, D.; Bolger, A. M.; Usadel, B.: De Novo Assembly of a New Solanum pennellii Accession Using Nanopore Sequencing. The Plant Cell 29 (10), pp. 2336 - 2348 (2017)
128.
Journal Article
Schneider, R.; Tang, L.; Lampugnani, E. R.; Barkwill, S.; Lathe, R.; Zhang, Y.; McFarlane, H. E.; Pesquet, E.; Niittyla, T.; Mansfield, S. D. et al.; Zhou, Y.; Persson, S.: Two Complementary Mechanisms Underpin Cell Wall Patterning during Xylem Vessel Development. The Plant Cell 29 (10), pp. 2433 - 2449 (2017)
129.
Journal Article
Schöttler, M. A.; Thiele, W.; Belkius, K.; Bergner, S.V.; Flügel, C.; Wittenberg, G.; Agrawal, S.; Stegemann, S.; Ruf, S.; Bock, R.: The plastid-encoded PsaI subunit stabilizes photosystem I during leaf senescence in tobacco. Journal of Experimental Botany 68 (5), pp. 1137 - 1155 (2017)
130.
Journal Article
Schwahn, K.; Beleggia, R.; Omranian, N.; Nikoloski, Z.: Stoichiometric Correlation Analysis: Principles of Metabolic Functionality from Metabolomics Data. Frontiers in Plant Science 8, 2152 (2017)
131.
Journal Article
Seki, M.; Ohara, T.; Hearn, T. J.; Frank, A.; da Silva, V. C. H.; Caldana, C.; Webb, A. A. R.; Satake, A.: Adjustment of the Arabidopsis circadian oscillator by sugar signalling dictates the regulation of starch metabolism. Scientific Reports 7 (1), 8305 (2017)
132.
Journal Article
Shahnejat-Bushehri, S.; Allu, A. D.; Mehterov, N.; Thirumalaikumar, V. P.; Alseekh, S.; Fernie, A. R.; Mueller-Roeber, B.; Balazadeh, S.: Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato. Frontiers in Plant Science 8, 214 (2017)
133.
Journal Article
Shnaider, Y.; Brotman, Y.; Perl-Treves, R.: To set or not to set: New tools to study the control of cucumber fruit set. Acta Horticulturae 1151, pp. 175 - 182 (2017)
134.
Journal Article
Shubchynskyy, V.; Boniecka, J.; Schweighofer, A.; Simulis, J.; Kvederaviciute, K.; Stumpe, M.; Mauch, F.; Balazadeh, S.; Mueller-Roeber, B.; Boutrot, F. et al.; Zipfel, C.; Meskiene, I.: Protein phosphatase AP2C1 negatively regulates basal resistance and defense responses to Pseudomonas syringae. Journal of Experimental Botany 68 (5), pp. 1169 - 1183 (2017)
135.
Journal Article
Shumbe, L.; D'Alessandro, S.; Shao, N.; Chevalier, A.; Ksas, B.; Bock, R.; Havaux, M.: METHYLENE BLUE SENSITIVITY 1 (MBS1) is required for acclimation of Arabidopsis to singlet oxygen and acts downstream of β-cyclocitral. Plant Cell Environment 40 (2), pp. 216 - 226 (2017)
136.
Journal Article
Sibout, R.; Proost, S.; Hansen, B. O.; Vaid, N.; Giorgi, F. M.; Ho-Yue-Kuang, S.; Legee, F.; Cezart, L.; Bouchabke-Coussa, O.; Soulhat, C. et al.; Provart, N.; Pasha, A.; Le Bris, P.; Roujol, D.; Hofte, H.; Jamet, E.; Lapierre, C.; Persson, S.; Mutwil, M.: Expression atlas and comparative coexpression network analyses reveal important genes involved in the formation of lignified cell wall in Brachypodium distachyon. New Phytologist 215 (3), pp. 1009 - 1025 (2017)
137.
Journal Article
Smirnova, J.; Fernie, A. R.; Spahn, C. M.T.; Steup, M.: Photometric assay of maltose and maltose-forming enzyme activity by using 4-alpha-glucanotransferase (DPE2) from higher plants. Analytical Biochemistry 532, pp. 72 - 82 (2017)
138.
Journal Article
Stein, O.; Avin-Wittenberg, T.; Krahnert, I.; Zemach, H.; Bogol, V.; Daron, O.; Aloni, R.; Fernie, A. R.; Granot, D.: Arabidopsis fructokinases are important for seed oil accumulation and vascular development. Frontiers in Plant Science 7, 2047 (2017)
139.
Journal Article
Stein, O.; Avin-Wittenberg, T.; Krahnert, I.; Zemach, H.; Bogol, V.; Daron, O.; Aloni, R.; Fernie, A. R.; Granot, D.: Corrigendum: Arabidopsis Fructokinases Are Important for Seed Oil Accumulation and Vascular Development. Frontiers in Plant Science 8, 303 (2017)
140.
Journal Article
Strand, D.; Livingston, A.; Satoh-Cruz, M.; Koepke, T.; Enlow, H.; Fisher, N.; Froehlich, J.; Cruz, J.; Minhas, D.; Hixson, K. et al.; Kohzuma, K.; Lipton, M.; Dhingra, A.; Kramer, D.: Defects in the Expression of Chloroplast Proteins Leads to H2O2 Accumulation and Activation of Cyclic Electron Flow around Photosystem I. Frontiers in Plant Science 7, 2073 (2017)
141.
Journal Article
Svetaz, L. A.; Bustamante, C. A.; Goldy, C.; Rivero, N.; Müller, G. L.; Valentini, G. H.; Fernie, A. R.; Drincovich, M. F.; Lara, M. V.: Unraveling early events in the Taphrina deformans – Prunus persica interaction: an insight into the differential responses in resistant and susceptible genotypes. Plant, Cell and Environment 40 (8), pp. 1456 - 1473 (2017)
142.
Journal Article
Sweetlove, L. J.; Nielsen, J.; Fernie, A. R.: Engineering central metabolism - a grand challenge for plant biologists. The Plant Journal 90, pp. 749 - 763 (2017)
143.
Journal Article
Swiadek, M.; Proost, S.; Sieh, D.; Yu, J.; Todesco, M.; Jorzig, C.; Cubillos, A.; Plötner, B.; Nikoloski, Z.; Chae, E. et al.; Giavalisco, P.; Fischer, A.; Schröder, F.; Kim, S.-T.; Weigel, D.; Laitinen, R.: Novel allelic variants in ACD6 cause hybrid necrosis in local collection of Arabidopsis thaliana. New Phytologist 213 (2), pp. 900 - 915 (2017)
144.
Journal Article
Tabatabaei, I.; Ruf, S.; Bock, R.: A bifunctional aminoglycoside acetyltransferase/phosphotransferase conferring tobramycin resistance provides an efficient selectable marker for plastid transformation. Plant Molecular Biology 93 (3), pp. 269 - 281 (2017)
145.
Journal Article
Tanou, G.; Minas, I. S.; Scossa, F.; Belghazi, M.; Xanthopoulou, A.; Ganopoulos, I.; Madesis, P.; Fernie, A. R.; Molassiotis, A.: Exploring priming responses involved in peach fruit acclimation to cold stress. Scientific Reports 7, 11358 (2017)
146.
Journal Article
Thormählen, I.; Zupok, A.; Rescher, J.; Leger, J.; Weissenberger, S.; Groysman, J.; Orwat, A.; Chatel-Innocenti, G.; Issakidis-Bourguet, E.; Armbruster, U. et al.; Geigenberger, P.: Thioredoxins Play a Crucial Role in Dynamic Acclimation of Photosynthesis in Fluctuating Light. Molecular Plant 10 (1), pp. 168 - 182 (2017)
147.
Journal Article
Tillich, M.; Lehwark, P.; Pellizzer, T.; Ulbricht-Jones, E. S.; Fischer, A.; Bock, R.; Greiner, S.: GeSeq - versatile and accurate annotation of organelle genomes. Nucleic Acids Research 45 (W1), pp. W6 - W11 (2017)
148.
Journal Article
Todaka, D.; Zhao, Y.; Yoshida, T.; Kudo, M.; Kidokoro, S.; Mizoi, J.; Kodaira, K.-S.; Takebayashi, Y.; Kojima, M.; Sakakibara, H. et al.; Toyooka, K.; Sato, M.; Fernie, A. R.; Shinozaki, K.; Yamaguchi-Shinozaki, K.: Temporal and spatial changes in gene expression, metabolite accumulation and phytohormone content in rice seedlings grown under drought stress conditions. The Plant Journal 90 (1), pp. 61 - 78 (2017)
149.
Journal Article
Tohge, T.; Fernie, A. R.: An Overview of Compounds Derived from the Shikimate and Phenylpropanoid Pathways and Their Medicinal Importance. Mini-Reviews in Medicinal Chemistry 17, pp. 1013 - 1027 (2017)
150.
Journal Article
Tohge, T.; Fernie, A. R.: Leveraging Natural Variance towards Enhanced Understanding of Phytochemical Sunscreens. Trends in Plant Science 22 (4), pp. 308 - 315 (2017)
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