Journal Article (187)

101.
Journal Article
Hu, C.; Shi, J.; Quan, S.; Cui, B.; Kleessen, S.; Nikoloski, Z.; Tohge, T.; Alexander, D.; Guo, L.; Lin, H. et al.; Wang, J.; Cui, X.; Rao, J.; Luo, Q.; Zhao, X.; Fernie, A. R.; Zhang, D.: Metabolic variation between japonica and indica rice cultivars as revealed by non-targeted metabolomics. Scientific Reports 4, 5067 (2014)
102.
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Idoine, A.; Boulouis, A.; Rupprecht, J.; Bock, R.: The Diurnal Logic of the Expression of the Chloroplast Genome in Chlamydomonas reinhardtii. PLoS One 9 (10), e108760 (2014)
103.
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Ito, J.; Herter, T.; Baidoo, E. E.; Lao, J.; Vega-Sánchez, M. E.; Smith-Moritz, M. A.; Adams, P. D.; Keasling, J. D.; Usadel, B.; Petzold, C. J. et al.; Heazlewood, J. L.: Analysis of plant nucleotide sugars by hydrophilic interaction liquid chromatography and tandem mass spectrometry. Analytical Biochemistry 448, pp. 14 - 22 (2014)
104.
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Jarillo, J. A.; Gaudin, V.; Hennig, L.; Köhler, C.; Pineiro, M.: Plant chromatin warms up in Madrid. Epigenetics 9 (4), pp. 644 - 652 (2014)
105.
Journal Article
Jarsch, I. K.; Konrad, S. S. A.; Stratil, T. F.; Urbanus, S. L.; Szymanski, W. G.; Braun, P.; Braun, K.-H.; Ott, T.: Plasma Membranes Are Subcompartmentalized into a Plethora of Coexisting and Diverse Microdomains in Arabidopsis and Nicotiana benthamiana. The Plant Cell 26 (4), pp. 1698 - 1711 (2014)
106.
Journal Article
Jinich, A.; Rappoport, D.; Dunn, I.; Sanchez-Lengeling, B.; Olivares-Amaya, R.; Noor, E.; Bar-Even, A.; Aspuru-Guzik, A.: Quantum Chemical Approach to Estimating the Thermodynamics of Metabolic Reactions. Scientific Reports 4, 7022 (2014)
107.
Journal Article
Kapuganti, J. G.; Brotman, Y.; Mur, L. A. J.: Localisation and Quantification of Reactive Oxygen Species and Nitric Oxide in Arabidopsis Roots in Response to Fungal Infection. Bio-protocol 4 (19), e1259 (2014)
108.
Journal Article
Kleessen, S.; Klie, S.; Nikoloski, Z.: Concurrent Conditional Clustering of Multiple Networks: COCONETS. PLoS One 9 (8), e103637 (2014)
109.
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Klein, O.; Strohschein, K.; Nebrich, G.; Oetjen, J.; Trede, D.; Thiele, H.; Alexandrov, T.; Giavalisco, P.; Duda, G. N.; von Roth, P. et al.; Geissler, S.; Klose, J.; Winkler, T.: MALDI imaging mass spectrometry: Discrimination of pathophysiological regions in traumatized skeletal muscle by characteristic peptide signatures. Proteomics 14 (20), pp. 2249 - 2260 (2014)
110.
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Klie, S.; Nikoloski, Z.; Selbig, J.: Biological Cluster Evaluation for Gene Function Prediction. Journal of Computational Biology 21 (6), pp. 428 - 445 (2014)
111.
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Klie, S.; Osorio, S.; Tohge, T.; Drincovich, M. F.; Fait, A.; Giovannoni, J. J.; Fernie, A. R.; Nikoloski, Z.: Conserved Changes in the Dynamics of Metabolic Processes during Fruit Development and Ripening across Species. Plant Physiology 164 (1), pp. 55 - 68 (2014)
112.
Journal Article
Koenig, A. G.; Hartl, M.; Pham, P. A.; Laxa, M.; Boersema, P.; Orwat, A.; Kalitventseva, I.; Ploechinger, M.; Braun, H. P.; Leister, D. et al.; Mann , M.; Wachter, A.; Fernie, A. R.; Finkemeier, I.: The Arabidopsis class II sirtuin is a lysine deacetylase and interacts with mitochondrial energy metabolism. Plant Physiology 164, pp. 1406 - 1412 (2014)
113.
Journal Article
Korkuc, P.; Schippers, J. H. M.; Walther, D.: Characterization and Identification of cis-Regulatory Elements in Arabidopsis Based on Single-Nucleotide Polymorphism Information. Plant Physiology 164 (1), pp. 181 - 200 (2014)
114.
Journal Article
Krajinski, F.; Courty, P.-E.; Sieh, D.; Franken, P.; Zhang, H.; Bucher, M.; Gerlach, N.; Kryvoruchko, I.; Zoeller, D.; Udvardi, M. et al.; Hause, B.: The H+-ATPase HA1 of Medicago truncatula Is Essential for Phosphate Transport and Plant Growth during Arbuscular Mycorrhizal Symbiosis. Plant Cell 26 (4), pp. 1808 - 1817 (2014)
115.
Journal Article
Kuppusamy, T.; Giavalisco, P.; Arvidsson, S.; Sulpice, R.; Stitt, M.; Finnegan, P. M.; Scheible, W.-R.; Lambers, H.; Jost, R.: Lipid Biosynthesis and Protein Concentration Respond Uniquely to Phosphate Supply during Leaf Development in Highly Phosphorus-Efficient Hakea prostrata. Plant Physiology 166 (4), pp. 1891 - 911 (2014)
116.
Journal Article
Lafon-Placette, C.; Köhler, C.: Embryo and endosperm, partners in seed development. Current Opinion in Plant Biology 17, pp. 64 - 69 (2014)
117.
Journal Article
Lohse, M.; Nagel, A.; Herter, T.; May, P.; Schroda, M.; Zrenner, R.; Tohge, T.; Fernie, A. R.; Stitt, M.; Usadel, B.: Mercator: a fast and simple web server for genome scale functional annotation of plant sequence data. Plant Cell Environment 37 (5), pp. 1250 - 1258 (2014)
118.
Journal Article
Lu, D.; Wang, T.; Persson, S.; Mueller-Roeber, B.; Mueller-Roeber, B.; Schippers, J. H. M.: Transcriptional control of ROS homeostasis by KUODA1 regulates cell expansion during leaf development. Nature Communications 5, 3767 (2014)
119.
Journal Article
Lunn, J. E.; Delorge, I.; Figueroa, C. M.; Van Dijck, P.; Stitt, M.: Trehalose metabolism in plants. The Plant Journal 79 (4), pp. 544 - 567 (2014)
120.
Journal Article
Malinova, I.; Kunz, H.-H.; Alseekh, S.; Herbst, K.; Fernie, A. R.; Gierth, M.; Fettke, J.: Reduction of the Cytosolic Phosphoglucomutase in Arabidopsis Reveals Impact on Plant Growth, Seed and Root Development, and Carbohydrate Partitioning. PLoS One 9 (11), e112468 (2014)
121.
Journal Article
McFarlane, H. E.; Doering, A.; Persson, S.: The Cell Biology of Cellulose Synthesis. Annual Review of Plant Biology 65, pp. 69 - 94 (2014)
122.
Journal Article
McFarlane, H. E.; Döring, A.; Persson, S.: The cell biology of cellulose synthesis. Annual Review of Plant Biology 65, pp. 69 - 94 (2014)
123.
Journal Article
Meret, M.; Kopetzki, D.; Degenkolbe, T.; Kleessen, S.; Nikoloski, Z.; Tellstroem, V.; Barsch, A.; Kopka, J.; Antonietti, M.; Willmitzer, L.: From systems biology to systems chemistry: metabolomic procedures enable insight into complex chemical reaction networks in water. RSC Advances 4 (32), pp. 16777 - 16781 (2014)
124.
Journal Article
Mettler, T.; Mühlhaus, T.; Hemme, D.; Schöttler, M. A.; Rupprecht, J.; Idoine, A.; Veyel, D.; Pal, S. K.; Yaneva-Roder, L.; Winck, F. V. et al.; Sommer, F.; Vosloh, D.; Seiwert, B.; Erban, A.; Burgos, A.; Arvidsson, S.; Schönfelder, S.; Arnold, A.; Günther, M.; Krause, U.; Lohse, M.; Kopka, J.; Nikoloski, Z.; Mueller-Roeber, B.; Willmitzer, L.; Bock, R.; Schroda, M.; Stitt, M.: Systems Analysis of the Response of Photosynthesis, Metabolism, and Growth to an Increase in Irradiance in the Photosynthetic Model Organism Chlamydomonas reinhardtii. The Plant Cell 26 (6), pp. 2310 - 2350 (2014)
125.
Journal Article
Mugford, S. T.; Fernandez, O.; Brinton, J.; Flis, A.; Krohn, N.; Encke, B.; Feil, R.; Sulpice, R.; Lunn, J. E.; Stitt, M. et al.; Smith, A. M.: Regulatory Properties of ADP Glucose Pyrophosphorylase Are Required for Adjustment of Leaf Starch Synthesis in Different Photoperiods. Plant Physiology 166 (4), pp. 1733 - 47 (2014)
126.
Journal Article
Ntatsi, G.; Savvas, D.; Huntenburg, K.; Druege, U.; Hincha, D. K.; Zuther, E.; Schwarz, D.: A study on ABA involvement in the response of tomato to suboptimal root temperature using reciprocal grafts with notabilis, a null mutant in the ABA-biosynthesis gene LeNCED1. Environmental and Experimental Botany 97, pp. 11 - 21 (2014)
127.
Journal Article
Nunes-Nesi, A.; Florian, A.; Howden, A.; Jahnke, K.; Timm, S.; Bauwe, H.; Sweetlove, L.; Fernie, A. R.: Is There a Metabolic Requirement for Photorespiratory Enzyme Activities in Heterotrophic Tissues? Molecular Plant 7 (1), pp. 248 - 251 (2014)
128.
Journal Article
Osorio, S.; Ruan, Y.-L.; Fernie, A. R.: An update on source-to-sink carbon partitioning in tomato. Frontiers in Plant Science 5, p. 516 - 516 (2014)
129.
Journal Article
Pertl-Obermeyer, H.; Schulze, W. X.; Obermeyer, G.: In vivo cross-linking combined with mass spectrometry analysis reveals receptor-like kinases and Ca2+ signalling proteins as putative interaction partners of pollen plasma membrane H+ ATPases. Proteomics 108, pp. 17 - 29 (2014)
130.
Journal Article
Pfister, B.; Lu, K.-J.; Eicke, S.; Feil, R.; Lunn, J. E.; Streb, S.; Zeeman, S. C.: Genetic Evidence That Chain Length and Branch Point Distributions Are Linked Determinants of Starch Granule Formation in Arabidopsis. Plant Physiology 165 (4), pp. 1457 - 1474 (2014)
131.
Journal Article
Pokhilko, A.; Flis, A.; Sulpice, R.; Stitt, M.; Ebenhoh, O.: Adjustment of carbon fluxes to light conditions regulates the daily turnover of starch in plants: a computational model. Molecular BioSystems 10 (3), pp. 613 - 627 (2014)
132.
Journal Article
Quadrana, L.; Almeida, J.; Asis, R.; Duffy, T.; Dominguez, P. G.; Bermudez, L.; Conti, G.; da Silva, J. V. C.; Peralta, I. E.; Colot, V. et al.; Asurmendi, S.; Fernie, A. R.; Rossi, M.; Carrari, F.: Natural occurring epialleles determine vitamin E accumulation in tomato fruits. Nature Communications 5, 4027 (2014)
133.
Journal Article
Rajasundaram, D.; Runavot, J.-L.; Guo, X.; Willats, W. G. T.; Meulewaeter, F.; Selbig, J.: Understanding the Relationship between Cotton Fiber Properties and Non-Cellulosic Cell Wall Polysaccharides. PLoS One 9 (11), p. e112168 - e112168 (2014)
134.
Journal Article
Rajasundaram, D.; Selbig, J.; Persson, S.; Klie, S.: Co-ordination and divergence of cell-specific transcription and translation of genes in arabidopsis root cells. Annals of Botany 114 (6), pp. 1109 - 23 (2014)
135.
Journal Article
Ramadan, A.; Sabir, J. S. M.; Alakilli, S. Y. M.; Shokry, A. M.; Gadalla, N. O.; Edris, S.; Al-Kordy, M. A.; Al-Zahrani, H. S.; El-Domyati, F. M.; Bahieldin, A. et al.; Baker, N. R.; Willmitzer, L.; Irgang, S.: Metabolomic Response of Calotropis procera Growing in the Desert to Changes in Water Availability. PLoS One 9 (2), e87895 (2014)
136.
Journal Article
Ramšak, Ž.; Baebler, Š.; Rotter, A.; Korbar, M.; Mozetič, I.; Usadel, B.; Gruden, K.: GoMapMan: integration, consolidation and visualization of plant gene annotations within the MapMan ontology. Nucleic Acids Research 42 (D1), pp. D1167 - D1175 (2014)
137.
Journal Article
Recht, L.; Toepfer, N.; Batushansky, A.; Sikron, N.; Gibon, Y.; Fait, A.; Nikoloski, Z.; Boussiba, S.; Zarka, A.: Metabolite Profiling and Integrative Modeling Reveal Metabolic Constraints for Carbon Partitioning under Nitrogen Starvation in the Green Algae Haematococcus pluvialis. The Journal of Biological Chemistry 289 (44), pp. 30387 - 30403 (2014)
138.
Journal Article
Rincent, R.; Nicolas, S.; Bouchet, S.; Altmann, T.; Brunel, D.; Revilla, P.; Malvar, R. A.; Moreno-Gonzalez, J.; Campo, L.; Melchinger, A. E. et al.; Schipprack, W.; Bauer, E.; Schoen, C. -.; Meyer, N.; Ouzunova, M.; Dubreuil, P.; Giauffret, C.; Madur, D.; Combes, V.; Dumas, F.; Bauland, C.; Jamin, P.; Laborde, J.; Flament, P.; Moreau, L.; Charcosset, A.: Dent and Flint maize diversity panels reveal important genetic potential for increasing biomass production. Theoretical and Applied Genetics 127 (11), pp. 2313 - 2331 (2014)
139.
Journal Article
Rodriguez-Sanz, H.; Moreno-Romero, J.; Solis, M.-T.; Köhler, C.; Risueno, M. C.; Testillano, P. S.: Changes in Histone Methylation and Acetylation during Microspore Reprogramming to Embryogenesis Occur Concomitantly with BnHKMT and BnHAT Expression and Are Associated with Cell Totipotency, Proliferation, and Differentiation in Brassica napus. Cytogenetic and genome research 143 (1-3), pp. 209 - 218 (2014)
140.
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Ruf, S.; Bock, R.: Plastid transformation in tomato. Chloroplast Biotechnology: Methods and Protocols (2014)
141.
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Ruprecht, C.; Carroll, A.; Persson, S.: T-DNA-Induced Chromosomal Translocations in feronia and anxur2 Mutants Reveal Implications for the Mechanism of Collapsed Pollen Due to Chromosomal Rearrangements. Molecular Plant 7 (10), pp. 1591 - 4 (2014)
142.
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Ruprecht, C.; Tohge, T.; Fernie, A. R.; Mortimer, C. L.; Kozlo, A.; Fraser, P. D.; Funke, N.; Cesarino, I.; Vanholme, R.; Boerjan, W. et al.; Morreel, K.; Burgert, I.; Gierlinger, N.; Bulone, V.; Schneider, V.; Stockero, A.; Navarro, J. P.; Pudel, F.; Tambuyser, B.; Hygate, J.; Bumstead, J.; Notley, L.; Persson, S.: Transcript and Metabolite Profiling for the Evaluation of Tobacco Tree and Poplar as Feedstock for the Bio-based Industry. Journal of visualized experiments: JoVE (87), e51393 (2014)
143.
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Rybak, K.; Steiner, A.; Synek, L.; Klaeger, S.; Kulich, I.; Facher, E.; Wanner, G.; Kuster, B.; Zarsky, V.; Persson, S. et al.; Assaad, F.F.: Plant cytokinesis is orchestrated by the sequential action of the TRAPPII and exocyst tethering complexes. Developmental Cell 29 (5), pp. 607 - 620 (2014)
144.
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Sade, D.; Sade, N.; Shriki, O.; Lerner, S.; Gebremedhin, A.; Karavani, A.; Brotman, Y.; Osorio, S.; Fernie, A. R.; Willmitzer, L. et al.; Czosnek, H.; Moshelion, M.: Water Balance, Hormone Homeostasis, and Sugar Signaling Are All Involved in Tomato Resistance to Tomato Yellow Leaf Curl Virus. Plant Physiology 165 (4), pp. 1684 - 1697 (2014)
145.
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Sampathkumar, A.; Krupinski, P.; Wightman, R.; Milani, P.; Berquand, A.; Boudaoud, A.; Hamant, O.; Jonsson, H.; Meyerowitz, E. M.: Subcellular and supracellular mechanical stress prescribes cytoskeleton behavior in Arabidopsis cotyledon pavement cells. eLife 3, e01967 (2014)
146.
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Scharff, L. B.; Bock, R.: Synthetic biology in plastids. The Plant Journal 77 (2), pp. 783 - 798 (2014)
147.
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Schmidt, S.; Dethloff, F.; Beine-Golovchuk, O.; Kopka, J.: REIL proteins of Arabidopsis thaliana interact in yeast-2-hybrid assays with homologs of the yeast RLP24, RPl24a, RLP24b, ARX1, and jjj1 proteins. Plant Signaling & Behavior 9 (3), e28224 (2014)
148.
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Schmidt, R.; Caldana, C.; Mueller-Roeber, B.; Schippers, J. H. M.: The contribution of SERF1 to root-to-shoot signalling during salinity stress in rice. Plant Signaling & Behavior 9, e27540 (2014)
149.
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Schmidt, R.; Schippers, J. H. M.; Mieulet, D.; Watanabe, M.; Hoefgen, R.; Guiderdoni, E.; Mueller-Roeber, B.: SALT-RESPONSIVE ERF1 Is a Negative Regulator of Grain Filling and Gibberellin-Mediated Seedling Establishment in Rice. Molecular Plant 7 (2), pp. 404 - 421 (2014)
150.
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Schmitz, J.; Heinrichs, L.; Scossa, F.; Fernie, A. R.; Oelze, M.-L.; Dietz, K.-J.; Rothbart, M.; Grimm, B.; Fluegge, U.-I.; Haeusler, R. E.: The essential role of sugar metabolism in the acclimation response of Arabidopsis thaliana to high light intensities. Journal of Experimental Botany 65 (6), pp. 1619 - 1636 (2014)
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