Journal Article (182)

101.
Journal Article
Parveen, I.; Moorby, J. M.; Fraser, M. D.; Erban, A.; Kopka, J.: Relationship between Grazing Lamb Growth Rate and Blood Plasma Analytes as Profiled by Gas Chromatography with Time-of-Flight Mass Spectrometry (GC-TOF/MS). Journal of Agricultural and Food Chemistry 58 (2), pp. 913 - 917 (2010)
102.
Journal Article
Peluffo, L.; Lia, V.; Troglia, C.; Maringolo, C.; Norma, P.; Escande, A.; Hopp, H. E.; Lytovchenko, A.; Fernie, A. R.; Heinz, R. et al.; Carrari, F.: Metabolic profiles of sunflower genotypes with contrasting response to Sclerotinia sclerotiorum infection. Phytochemistry 71 (1), pp. 70 - 80 (2010)
103.
Journal Article
Perez-Rodriguez, P.; Riano-Pachon, D. M.; Correa, L. G. G.; Rensing, S. A.; Kersten, B.; Mueller-Roeber, B.: PInTFDB: updated content and new features of the plant transcription factor database. Nucleic Acids Research 38, pp. D822 - D827 (2010)
104.
Journal Article
Phuc, T. D.; Prudent, M.; Sulpice, R.; Causse, M.; Fernie, A. R.: The Influence of Fruit Load on the Tomato Pericarp Metabolome in a Solanum chmielewskii Introgression Line Population. Plant Physiology 154 (3), pp. 1128 - 1142 (2010)
105.
Journal Article
Pracharoenwattana, I.; Zhou, W. X.; Keech, O.; Francisco, P. B.; Udomchalothorn, T.; Tschoep, H.; Stitt, M.; Gibon, Y.; Smith, S. M.: Arabidopsis has a cytosolic fumarase required for the massive allocation of photosynthate into fumaric acid and for rapid plant growth on high nitrogen. Plant Journal 62 (5), pp. 785 - 795 (2010)
106.
Journal Article
Preuten, T.; Cincu, E.; Fuchs, J.; Zoschke, R.; Liere, K.; Boerner, T.: Fewer genes than organelles: extremely low and variable gene copy numbers in mitochondria of somatic plant cells. The Plant Journal 64 (6), pp. 948 - 959 (2010)
107.
Journal Article
Radchuk, R.; Conrad, U.; Saalbach, I.; Giersberg, M.; Emery, R. J. N.; Kuester, H.; Nunes-Nesi, A.; Fernie, A. R.; Weschke, W.; Weber, H.: Abscisic acid deficiency of developing pea embryos achieved by immunomodulation attenuates developmental phase transition and storage metabolism. The Plant Journal 64 (5), pp. 715 - 730 (2010)
108.
Journal Article
Radchuk, R.; Emery, R. J. N.; Weier, D.; Vigeolas, H.; Geigenberger, P.; Lunn, J. E.; Feil, R.; Weschke, W.; Weber, H.: Sucrose non-fermenting kinase 1 (SnRK1) coordinates metabolic and hormonal signals during pea cotyledon growth and differentiation. The Plant Journal 61 (2), pp. 324 - 338 (2010)
109.
Journal Article
Rauwolf, U.; Golczyk, H.; Greiner, S.; Herrmann, R. G.: Variable amounts of DNA related to the size of chloroplasts III. Biochemical determinations of DNA amounts per organelle. Molecular Genetics and Genomics 283 (1), pp. 35 - 47 (2010)
110.
Journal Article
Riano-Pachon, D. M.; Kleessen, S.; Neigenfind; Durek, P.; Weber, E.; Engelsberger, W. R.; Walther, D.; Selbig, J.; Schulze, W. X.; Kersten, B.: Proteome-wide survey of phosphorylation patterns affected by nuclear DNA polymorphisms in Arabidopsis thaliana. BMC Genomics 11, p. 411 (2010)
111.
Journal Article
Richardt, S.; Timmerhaus, G.; Lang, D.; Qudeimat, E.; Correa, L. G. G.; Reski, R.; Rensing, S. A.; Frank, W.: Microarray analysis of the moss Physcomitrella patens reveals evolutionarily conserved transcriptional regulation of salt stress and abscisic acid signalling. Plant Molecular Biology 72 (1-2), pp. 27 - 45 (2010)
112.
Journal Article
Riebeseel, E.; Haeusler, R. E.; Radchuk, R.; Meitzel, T.; Hajirezaei, M.-R.; Emery, R. J. N.; Kuester, H.; Nunes-Nesi, A.; Fernie, A. R.; Weschke, W. et al.; Weber, H.: The 2-oxoglutarate/malate translocator mediates amino acid and storage protein biosynthesis in pea embryos. The Plant Journal 61 (2), pp. 350 - 363 (2010)
113.
Journal Article
Riedelsberger, J.; Sharma, T.; Gonzalez, W.; Gajdanowicz, P.; Morales-Navarro, S. E.; Garcia-Mata, C.; Mueller-Roeber, B.; Gonzalez-Nilo, F. D.; Blatt, M. R.; Dreyer, I.: Distributed Structures Underlie Gating Differences between the K-in Channel KAT1 and the K-out Channel SKOR. Molecular Plant 3 (1), pp. 236 - 245 (2010)
114.
Journal Article
Robles, P.; Fleury, D.; Candela, H.; Cnops, G.; Alonso-Peral, M. M.; Anami, S.; Falcone, A.; Caldana, C.; Willmitzer, L.; Ponce, M. R. et al.; van Lijsebettens, M.; Micol, J. L.: The RON1/FRY1/SAL1 Gene Is Required for Leaf Morphogenesis and Venation Patterning in Arabidopsis. Plant Physiology 152 (3), pp. 1357 - 1372 (2010)
115.
Journal Article
Rocha, M.; Licausi, F.; Araujo, W. L.; Nunes-Nesi, A.; Sodek, L.; Fernie, A. R.; van Dongen, J. T.: Glycolysis and the Tricarboxylic Acid Cycle Are Linked by Alanine Aminotransferase during Hypoxia Induced by Waterlogging of Lotus japonicus. Plant Physiology 152 (3), pp. 1501 - 1513 (2010)
116.
Journal Article
Rocha, M.; Sodek, L.; Licausi, F.; Hameed, M. W.; Dornelas, M. C.; van Dongen, J. T.: Analysis of alanine aminotransferase in various organs of soybean (Glycine max) and in dependence of different nitrogen fertilisers during hypoxic stress. Amino Acids 39 (4), pp. 1043 - 1053 (2010)
117.
Journal Article
Sajitz-Hermstein, M.; Nikoloski, Z.: A novel approach for determining environment-specific protein costs: the case of Arabidopsis thaliana. Bioinformatics 26 (18), pp. i582 - i588 (2010)
118.
Journal Article
Sanchez-Rodriguez, C.; Rubio-Somoza, I.; Sibout, R.; Persson, S.: Phytohormones and the cell wall in Arabidopsis during seedling growth. Trends in Plant Science 15 (5), pp. 291 - 301 (2010)
119.
Journal Article
Sanchez, D. H.; Szymanski, J.; Erban, A.; Udvardi, M. K.; Kopka, J.: Mining for robust transcriptional and metabolic responses to long-term salt stress: a case study on the model legume Lotus japonicus. Plant Cell and Environment 33 (4), pp. 468 - 480 (2010)
120.
Journal Article
Scherling, C.; Roscher, C.; Giavalisco, P.; Schulze, E.-D.; Weckwerth, W.: Metabolomics Unravel Contrasting Effects of Biodiversity on the Performance of Individual Plant Species. PLoS One 5 (9), p. e12569 (2010)
121.
Journal Article
Schippers, J. H. M.; Mueller-Roeber, B.: Ribosomal composition and control of leaf development. Plant Science 179 (4), pp. 307 - 315 (2010)
122.
Journal Article
Schliep, M.; Ebert, B.; Simon-Rosin, U.; Zoeller, D.; Fisahn, J.: Quantitative expression analysis of selected transcription factors in pavement, basal and trichome cells of mature leaves from Arabidopsis thaliana. Protoplasma 241 (1-4), pp. 29 - 36 (2010)
123.
Journal Article
Schmollinger, S.; Strenkert, D.; Schroda, M.: An inducible artificial microRNA system for Chlamydomonas reinhardtii confirms a key role for heat shock factor 1 in regulating thermotolerance. Current Genetics 56 (4), pp. 383 - 389 (2010)
124.
Journal Article
Schudoma, C.; May, P.; Nikiforova, V.; Walther, D.: Sequence-structure relationships in RNA loops: establishing the basis for loop homology modeling. Nucleic Acids Research 38 (3), pp. 970 - 980 (2010)
125.
Journal Article
Schudoma, C.; May, P.; Walther, D.: Modeling RNA loops using sequence homology and geometric constraints. Bioinformatics 26 (13), pp. 1671 - 1672 (2010)
126.
Journal Article
Schuette, M.; Klitgord, N.; Segre, D.; Ebenhoeh, O.: Co-evolution of metabolism and protein sequences. Genome Informatics 22, pp. 156 - 166 (2010)
127.
Journal Article
Schuette, M.; Skupin, A.; Segre, D.; Ebenhoeh, O.: Modeling the complex dynamics of enzyme-pathway coevolution. Chaos 20 (4), p. 045115 (2010)
128.
Journal Article
Schulze, W. X.: Proteomics approaches to understand protein phosphorylation in pathway modulation. Current Opinion in Plant Biology 13 (3), pp. 280 - 287 (2010)
129.
Journal Article
Schulze, W. X.; Engelsberger, W. R.: Mechanismen der Nährstofferkennung in Pflanzen - Die Rolle der Dynamik von Protein-Phosphorylierung. systembiologie.de 2, pp. 36 - 39 (2010)
130.
Journal Article
Schulze, W. X.; Usadel, B.: Quantitation in Mass-Spectrometry-Based Proteomics. Annual Review of Plant Biology 61, pp. 491 - 516 (2010)
131.
Journal Article
Schütte, M.; Mutwil, M.; Persson, S.; Ebenhöh, O.: Analyzing gene coexpression data by an evolutionary model. Genome Informatics 24, pp. 154 - 163 (2010)
132.
Journal Article
Schwenk, B. B.; Selbig, J.; Ben-Zion, Y.; Holschneider, M.: ExPlanes: exploring planes in triplet data. Journal of Integrative Bioinformatics 7 (3), p. 132 (2010)
133.
Journal Article
Sienkiewicz-Porzucek, A.; Sulpice, R.; Osorio, S.; Krahnert, I.; Leisse, A.; Urbanczyk-Wochniak, E.; Hodges, M.; Fernie, A. R.; Nunes-Nesi, A.: Mild Reductions in Mitochondrial NAD-Dependent Isocitrate Dehydrogenase Activity Result in Altered Nitrate Assimilation and Pigmentation But Do Not Impact Growth. Molecular Plant 3 (1), pp. 156 - 173 (2010)
134.
Journal Article
Skirycz, A.; de Bodt, S.; Obata, T.; de Clercq, I.; Claeys, H.; de Rycke, R.; Andriankaja, M.; van Aken, O.; van Breusegem, F.; Fernie, A. R. et al.; Inze, D.: Developmental Stage Specificity and the Role of Mitochondrial Metabolism in the Response of Arabidopsis Leaves to Prolonged Mild Osmotic Stress. Plant Physiology 152 (1), pp. 226 - 244 (2010)
135.
Journal Article
Skirycz, A.; Inze, D.: More from less: plant growth under limited water. Current Opinion in Biotechnology 21 (2), pp. 197 - 203 (2010)
136.
Journal Article
Skupin, A.; Falcke, M.: Statistical analysis of calcium oscillations. European Physical Journal-Special Topics 187 (1), pp. 231 - 240 (2010)
137.
Journal Article
Skupin, A.; Kettenmann, H.; Falcke, M.: Calcium Signals Driven by Single Channel Noise. PLoS Computational Biology 6 (8), p. e1000870 (2010)
138.
Journal Article
Sommer, F.; Kropat, J.; Malasarn, D.; Grossoehme, N. E.; Chen, X. H.; Giedroc, D. P.; Merchant, S. S.: The CRR1 Nutritional Copper Sensor in Chlamydomonas Contains Two Distinct Metal-Responsive Domains. Plant Cell 22 (12), pp. 4098 - 4113 (2010)
139.
Journal Article
Sreenivasulu, N.; Radchuk, V.; Alawady, A.; Borisjuk, L.; Weier, D.; Staroske, N.; Fuchs, J.; Miersch, O.; Strickert, M.; Usadel, B. et al.; Wobus, U.; Grimm, B.; Weber, H.; Weschke, W.: De-regulation of abscisic acid contents causes abnormal endosperm development in the barley mutant seg8. Plant Journal 64 (4), pp. 589 - 603 (2010)
140.
Journal Article
Steinfath, M.; Gaertner, T.; Lisec, J.; Meyer, R. C.; Altmann, T.; Willmitzer, L.; Selbig, J.: Prediction of hybrid biomass in Arabidopsis thaliana by selected parental SNP and metabolic markers. Theoretical and Applied Genetics 120 (2), pp. 239 - 247 (2010)
141.
Journal Article
Steinfath, M.; Strehmel, N.; Peters, R.; Schauer, N.; Groth, D.; Hummel, J.; Steup, M.; Selbig, J.; Kopka, J.; Geigenberger, P. et al.; van Dongen, J. T.: Discovering plant metabolic biomarkers for phenotype prediction using an untargeted approach. Plant Biotechnology Journal 8 (8), pp. 900 - 911 (2010)
142.
Journal Article
Steinhauser, M.-C.; Steinhauser, D.; Koehl, K. I.; Carrari, F.; Gibon, Y.; Fernie, A. R.; Stitt, M.: Enzyme Activity Profiles during Fruit Development in Tomato Cultivars and Solanum pennellii. Plant Physiology 153 (1), pp. 80 - 98 (2010)
143.
Journal Article
Stitt, M.; Lunn, J.; Usadel, B.: Arabidopsis and primary photosynthetic metabolism - more than the icing on the cake. The Plant Journal 61 (6), pp. 1067 - 1091 (2010)
144.
Journal Article
Stracke, R.; Jahns, O.; Keck, M.; Tohge, T.; Niehaus, K.; Fernie, A. R.; Weisshaar, B.: Analysis of PRODUCTION OF FLAVONOL GLYCOSIDES-dependent flavonol glycoside accumulation in Arabidopsis thaliana plants reveals MYB11-, MYB12-and MYB111-independent flavonol glycoside accumulation. New Phytologist 188 (4), pp. 985 - 1000 (2010)
145.
Journal Article
Strassburg, K.; Walther, D.; Takahashi, H.; Kanaya, S.; Kopka, J.: Dynamic Transcriptional and Metabolic Responses in Yeast Adapting to Temperature Stress. Omics-a Journal of Integrative Biology 14 (3), pp. 249 - 259 (2010)
146.
Journal Article
Strehmel, N.; Praeger, U.; Koenig, C.; Fehrle, I.; Erban, A.; Geyer, M.; Kopka, J.; van Dongen, J. T.: Time course effects on primary metabolism of potato (Solanum tuberosum) tuber tissue after mechanical impact. Postharvest Biology and Technology 56 (2), pp. 109 - 116 (2010)
147.
Journal Article
Sulpice, R.; Sienkiewicz-Porzucek, A.; Osorio, S.; Krahnert, I.; Stitt, M.; Fernie, A. R.; Nunes-Nesi, A.: Mild reductions in cytosolic NADP-dependent isocitrate dehydrogenase activity result in lower amino acid contents and pigmentation without impacting growth. Amino Acids 39 (4), pp. 1055 - 1066 (2010)
148.
Journal Article
Sulpice, R.; Trenkamp, S.; Steinfath, M.; Usadel, B.; Gibon, Y.; Witucka-Wall, H.; Pyl, E. T.; Tschoep, H.; Steinhauser, M.-C.; Guenther, M. et al.; Hoehne, M.; Rohwer, J. M.; Altmann, T.; Fernie, A. R.; Stitt, M.: Network analysis of enzyme activities and metabolite levels and their relationship to biomass in a large panel of Arabidopsis accessions. The Plant Cell 22 (8), pp. 2872 - 2893 (2010)
149.
Journal Article
Sun, X.; Zou, Y.; Nikiforova, V.; Kurths, J.; Walther, D.: The complexity of gene expression dynamics revealed by permutation entropy. BMC Bioinformatics 11, p. 607 (2010)
150.
Journal Article
Sweetlove, L. J.; Beard, K. F. M.; Nunes-Nesi, A.; Fernie, A. R.; Ratcliffe, R. G.: Not just a circle: flux modes in the plant TCA cycle. Trends in Plant Science 15 (8), pp. 462 - 470 (2010)
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