Journal Article (171)

51.
Journal Article
Siegel, J. B.; Smith, A. L.; Poust, S.; Wargacki, A. J.; Bar-Even, A.; Louw, C.; Shen, B. W.; Eiben, C. B.; Tran, H. M.; Noor, E. et al.; Gallaher, J. L.; Bale, J.; Yoshikuni, Y.; Gelb, M. H.; Keasling, J. D.; Stoddard, B. L.; Lidstrom, M. E.; Baker, D.: Computational protein design enables a novel one-carbon assimilation pathway. Proceedings of the National Academy of Sciences of the United States of America 112 (12), pp. 3704 - 3709 (2015)
52.
Journal Article
Thieme, C. J.; Rojas-Triana, M.; Stecyk, E.; Schudoma, C.; Zhang, W.; Yang, L.; Minambres, M.; Walther, D.; Schulze, W. X.; Paz-Ares, J. et al.; Scheible, W.-R.; Kragler, F.: Endogenous Arabidopsis messenger RNAs transported to distant tissues. Nature Plants 1, 15025 (2015)
53.
Journal Article
Daloso, D. M.; Müller, K.; Obata, T.; Florian, A.; Tohge, T.; Bottcher, A.; Riondet, C.; Banat, L.; Carrari, F.; Nunes-Nesi, A. et al.; Buchanan, B. B.; Reichheld, J.-P.; Araujo, W. L.; Fernie, A. R.: Thioredoxin, a master regulator of the tricarboxylic acid cycle in plant mitochondria. Proceedings of the National Academy of Sciences of the USA 112 (11), pp. E1392 - E1400 (2015)
54.
Journal Article
López, M.; Zanor, M.; Pratta, G.; Stegmayer, G.; Boggio, S.; Conte, M.; Bermúdez, L.; Coluccio Leskow, C.; Rodríguez, G.; Picardi, L. et al.; Zorzoli, R.; Fernie, A. R.; Milone, D.; Asís, R.; Valle, E.; Carrari, F.: Metabolic analyses of interspecific tomato recombinant inbred lines for fruit quality improvement. Metabolomics, pp. 1 - 16 (2015)
55.
Journal Article
Zehrmann, A.; Haertel, B.; Glass, F.; Bayer-Csaszar, E.; Obata, T.; Meyer, E. H.; Brennicke, A.; Takenaka, M.: Selective Homo- and Heteromer Interactions between the Multiple Organellar RNA Editing Factor (MORF) Proteins in Arabidopsis thaliana. The Journal of Biological Chemistry 290 (10), pp. 6445 - 6456 (2015)
56.
Journal Article
Amaya, I.; Osorio, S.; Martinez-Ferri, E.; Lima-Silva, V.; Doblas, V. G.; Fernandez-Munoz, R.; Fernie, A. R.; Botella, M. A.; Valpuesta, V.: Increased antioxidant capacity in tomato by ectopic expression of the strawberry D-galacturonate reductase gene. Biotechnology Journal 10 (3), pp. 490 - 500 (2015)
57.
Journal Article
Delorge, I.; Figueroa, C. M.; Feil, R.; Lunn, J. E.; Van Dijck, P.: Trehalose-6-phosphate synthase 1 is not the only active TPS in Arabidopsis thaliana. Biochemical Journal 466, pp. 283 - 290 (2015)
58.
Journal Article
Kleessen, S.; Irgang, S.; Klie, S.; Giavalisco, P.; Nikoloski, Z.: Integration of transcriptomics and metabolomics data specifies the metabolic response of Chlamydomonas to rapamycin treatment. The Plant Journal 81 (5), pp. 822 - 835 (2015)
59.
Journal Article
Kohl, S.; Hollmann, J.; Erban, A.; Kopka, J.; Riewe, D.; Weschke, W.; Weber, H.: Metabolic and transcriptional transitions in barley glumes reveal a role as transitory resource buffers during endosperm filling. Journal of Experimental Botany 66 (5), pp. 1397 - 1411 (2015)
60.
Journal Article
Khozaei, M.; Fisk, S.; Lawson, T.; Gibon, Y.; Sulpice, R.; Stitt, M.; Lefebvre, S. C.; Raines, C. A.: Overexpression of Plastid Transketolase in Tobacco Results in a Thiamine Auxotrophic Phenotype. Plant Cell 27 (2), pp. 432 - 447 (2015)
61.
Journal Article
Obata, T.; Geigenberger, P.; Fernie, A. R.: Redox control of plant energy metabolism - the complex intertwined regulation of redox and metabolism in plant cells. The Biochemist 37, pp. 14 - 18 (2015)
62.
Journal Article
Schwarz, N.; Armbruster, U.; Iven, T.; Brueckle, L.; Melzer, M.; Feussner, I.; Jahns, P.: Tissue-Specific Accumulation and Regulation of Zeaxanthin Epoxidase in Arabidopsis Reflect the Multiple Functions of the Enzyme in Plastids. SI 56 (2), pp. 346 - 357 (2015)
63.
Journal Article
Allorent, G.; Osorio, S.; Vu, J. L.; Falconet, D.; Jouhet, J.; Kuntz, M.; Fernie, A. R.; Lerbs-Mache, S.; Macherel, D.; Courtois, F. et al.; Finazzi, G.: Adjustments of embryonic photosynthetic activity modulate seed fitness in Arabidopsis thaliana. New Phytologist 205 (2), pp. 707 - 719 (2015)
64.
Journal Article
Alseekh, S.; Tohge, T.; Wendenburg, R.; Scossa, F.; Omranian, N.; Li, J.; Kleessen, S.; Giavalisco, P.; Pleban, T.; Mueller-Roeber, B. et al.; Zamir, D.; Nikoloski, Z.; Fernie, A. R.: Identification and mode of inheritance of quantitative trait Loci for secondary metabolite abundance in tomato. The Plant Cell 27 (3), pp. 485 - 512 (2015)
65.
Journal Article
Anoman, A. D.; Munoz-Bertomeu, J.; Rosa-Tellez, S.; Flores-Tornero, M.; Serrano, R.; Bueso, E.; Fernie, A. R.; Segura, J.; Ros, R.: Plastidial Glycolytic Glyceraldehyde-3-Phosphate Dehydrogenase Is an Important Determinant in the Carbon and Nitrogen Metabolism of Heterotrophic Cells in Arabidopsis. Plant Physiology 169 (3), pp. 1619 - 1637 (2015)
66.
Journal Article
Apelt, F.; Breuer, D.; Nikoloski, Z.; Stitt, M.; Kragler, F.: Phytotyping(4D): a light-field imaging system for non-invasive and accurate monitoring of spatio-temporal plant growth. The Plant Journal 82 (4), pp. 693 - 706 (2015)
67.
Journal Article
Arnold, A.; Sajitz-Hermstein, M.; Nikoloski, Z.: Effects of Varying Nitrogen Sources on Amino Acid Synthesis Costs in Arabidopsis thaliana under Different Light and Carbon-Source Conditions. PLoS One 10 (2), e0116536 (2015)
68.
Journal Article
Auer, J. S.; Nagel, A. C.; Schulz, A.; Wahl, V.; Preiss, A.: MAPK-dependent phosphorylation modulates the activity of Suppressor of Hairless in Drosophila. Cellular Signalling 27 (1), pp. 115 - 124 (2015)
69.
Journal Article
Auer, J. S.; Nagel, A. C.; Schulz, A.; Wahl, V.; Preiss, A.: Local overexpression of Su(H)-MAPK variants affects Notch target gene expression and adult phenotypes in Drosophila. Data in Brief 5 (Supplement C), pp. 852 - 863 (2015)
70.
Journal Article
Avin-Wittenberg, T.; Bajdzienko, K.; Wittenberg, G.; Alseekh, S.; Tohge, T.; Bock, R.; Giavalisco, P.; Fernie, A. R.: Global Analysis of the Role of Autophagy in Cellular Metabolism and Energy Homeostasis in Arabidopsis Seedlings under Carbon Starvation. The Plant Cell 27 (2), pp. 306 - 322 (2015)
71.
Journal Article
Baerenfaller, K.; Massonnet, C.; Hennig, L.; Russenberger, D.; Sulpice, R.; Walsh, S.; Stitt, M.; Granier, C.; Gruissem, W.: A long photoperiod relaxes energy management in Arabidopsis leaf six. Current Plant Biology 2, pp. 34 - 45 (2015)
72.
Journal Article
Bar-Even, A.; Milo, R.; Noor, E.; Tawfik, D. S.: The Moderately Efficient Enzyme: Futile Encounters and Enzyme Floppiness. Biochemistry 54 (32), pp. 4969 - 4977 (2015)
73.
Journal Article
Barcelos, E.; Rios, S. d. A.; Cunha, R. N. V.; Lopes, R.; Motoike, S. Y.; Babiychuk, E.; Skirycz, A.; Kushnir, S.: Oil palm natural diversity and the potential for yield improvement. Frontiers in Plant Science 6, 190 (2015)
74.
Journal Article
Bauer, C.; Stec, K.; Glintschert, A.; Gruden, K.; Schichor, C.; Or-Guil, M.; Selbig, J.; Schuchhardt, J.: BioMiner: Paving the Way for Personalized Medicine. Cancer informatics 14, pp. 55 - 63 (2015)
75.
Journal Article
Benina, M.; Ribeiro, D. M.; Gechev, T. S.; Mueller-Roeber, B.; Schippers, J. H. M.: A cell type-specific view on the translation of mRNAs from ROS-responsive genes upon paraquat treatment of Arabidopsis thaliana leaves. Plant, Cell and Environment 38 (2- SI), pp. 349 - 363 (2015)
76.
Journal Article
Bielecka, M.; Watanabe, M.; Morcuende, R.; Scheible, W.-R.; Hawkesford, M. J.; Hesse, H.; Hoefgen, R.: Transcriptome and metabolome analysis of plant sulphate starvation and resupply provides novel information on transcriptional regulation of metabolism associated with sulphur, nitrogen and phosphorus nutritional responses in Arabidopsis. Frontiers in Plant Science 5, 805 (2015)
77.
Journal Article
Bock, R.: Engineering plastid genomes: methods, tools, and applications in basic research and biotechnology. Annual Review of Plant Biology 66, pp. 211 - 241 (2015)
78.
Journal Article
Bozek, K.; Wei, Y.; Yan, Z.; Liu, X.; Xiong, J.; Sugimoto, M.; Tomita, M.; Paeaebo, S.; Sherwood, C. C.; Hof, P. R. et al.; Ely, J. J.; Li, Y.; Steinhauser, D.; Willmitzer, L.; Giavalisco, P.; Khaitovich, P.: Organization and Evolution of Brain Lipidome Revealed by Large-Scale Analysis of Human, Chimpanzee, Macaque, and Mouse Tissues. Neuron 85 (4), pp. 695 - 702 (2015)
79.
Journal Article
Breuer, D.; Nikoloski, Z.: DeFiNe: an optimisation-based method for robust disentangling of filamentous networks. Scientific Reports 5, 18267 (2015)
80.
Journal Article
Bromke, M. A.; Hesse, H.: Phylogenetic analysis of methionine synthesis genes from Thalassiosira pseudonana. SpringerPlus 4, 391 (2015)
81.
Journal Article
Bromke, M. A.; Hochmuth, A.; Tohge, T.; Fernie, A. R.; Giavalisco, P.; Burgos, A.; Willmitzer, L.; Brotman, Y.: Liquid chromatography high-resolution mass spectrometry for fatty acid profiling. The Plant Journal 81 (3), pp. 529 - 536 (2015)
82.
Journal Article
Bromke, M. A.; Sabir, J. S.; Alfassi, F. A.; Hajarah, N. H.; Kabli, S. A.; Al-Malki, A. L.; Ashworth, M. P.; Meret, M.; Jansen, R. K.; Willmitzer, L.: Metabolomic Profiling of 13 Diatom Cultures and Their Adaptation to Nitrate-Limited Growth Conditions. PLoS One 10 (10), e0138965 (2015)
83.
Journal Article
Brown, N. A.; dos Reis, T. F.; Ries, L. N. A.; Caldana, C.; Mah, J.-H.; Yu, J.-H.; Macdonald, J. M.; Goldman, G. H.: G-protein coupled receptor-mediated nutrient sensing and developmental control in Aspergillus nidulans. Molecular Microbiology 98 (3), pp. 420 - 439 (2015)
84.
Journal Article
Castellini, A.; Paltrinieri, D.; Manca, V.: MP-GeneticSynth: inferring biological network regulations from time series. Bioinformatics (Oxford, England) 31 (5), pp. 785 - 787 (2015)
85.
Journal Article
Childs, D.; Grimbs, S.; Selbig, J.: Refined elasticity sampling for Monte Carlo-based identification of stabilizing network patterns. Bioinformatics 31 (12), pp. i214 - i220 (2015)
86.
Journal Article
Cross, J. M.; Darrah, C.; Oraguzie, N.; Ahmadi, N.; Skirycz, A.: Editorial: Natural diversity in the new millennium. Frontiers in Plant Science 6, 897 (2015)
87.
Journal Article
Dobritzsch, S.; Weyhe, M.; Schubert, R.; Dindas, J.; Hause, G.; Kopka, J.; Hause, B.: Dissection of jasmonate functions in tomato stamen development by transcriptome and metabolome analyses. BMC Biology 13, 28 (2015)
88.
Journal Article
Duan, G. Y.; Walther, D.: The Roles of Post-translational Modifications in the Context of Protein Interaction Networks. PLoS Computational Biology 11 (2), e1004049 (2015)
89.
Journal Article
Duan, G. Y.; Walther, D.: Computational phosphorylation network reconstruction: methods and resources. Methods in Molecular Biology 1306, pp. 177 - 194 (2015)
90.
Journal Article
Eastmond, P. J.; Astley, H. M.; Parsley, K.; Aubry, S.; Williams, B. P.; Menard, G. N.; Craddock, C. P.; Nunes-Nesi, A.; Fernie, A. R.; Hibberd, J. M.: Arabidopsis uses two gluconeogenic gateways for organic acids to fuel seedling establishment. Nature Communications 6, 6659 (2015)
91.
Journal Article
Emadpour, M.; Karcher, D.; Bock, R.: Boosting riboswitch efficiency by RNA amplification. Nucleic Acids Research 43 (10), e66 (2015)
92.
Journal Article
Endler, A.; Kesten, C.; Schneider, R.; Zhang, Y.; Ivakov, A.; Fröhlich, A.; Funke, N.; Persson, S.: A Mechanism for Sustained Cellulose Synthesis during Salt Stress. Cell 162 (6), pp. 1353 - 1364 (2015)
93.
Journal Article
Engqvist, M. K. M.; Schmitz, J.; Gertzmann, A.; Florian, A.; Jaspert, N.; Arif, M.; Balazadeh, S.; Mueller-Roeber, B.; Fernie, A. R.; Maurino, V. G.: GLYCOLATE OXIDASE3, a Glycolate Oxidase Homolog of Yeast l-Lactate Cytochrome c Oxidoreductase, Supports l-Lactate Oxidation in Roots of Arabidopsis. Plant Physiology 169 (2), pp. 1042 - 61 (2015)
94.
Journal Article
Estevez, S.; Nikoloski, Z.: Context-Specific Metabolic Model Extraction Based on Regularized Least Squares Optimization. PLoS One 10 (7), e0131875 (2015)
95.
Journal Article
Fala, A. M.; Oliveira, J. F.; Adamoski, D.; Aricetti, J. A.; Dias, M. M.; Dias, M. V. B.; Sforca, M. L.; Lopes-de-Oliveira, P. S.; Rocco, S. A.; Caldana, C. et al.; Dias, S. M. G.; Ambrosio, A. L. B.: Unsaturated fatty acids as high-affinity ligands of the C-terminal Per-ARNT-Sim domain from the Hypoxia-inducible factor 3 alpha. Scientific Reports 5, 12698 (2015)
96.
Journal Article
Fernie, A. R.; Tohge, T.: Location, location, location - no more! The unravelling of chromatin remodeling regulatory aspects of plant metabolic gene clusters. New Phytologist 205 (2), pp. 458 - 460 (2015)
97.
Journal Article
Fernie, A. R.; Tohge, T.: A cross-kingdom history. eLife 4, e07527 (2015)
98.
Journal Article
Fernie, A. R.; Toth, S. Z.: Identification of the Elusive Chloroplast Ascorbate Transporter Extends the Substrate Specificity of the PHT Family. Molecular Plant 8 (5), pp. 674 - 676 (2015)
99.
Journal Article
Fisahn, J.; Klingele, E.; Barlow, P.: Lunar gravity affects leaf movement of Arabidopsis thaliana in the International Space Station. Planta 241 (6), pp. 1509 - 1518 (2015)
100.
Journal Article
Fisahn, J.; Klingele, E.; Barlow, P.: Lunisolar tidal force and its relationship to chlorophyll fluorescence in Arabidopsis thaliana. Plant signaling & behavior 10 (9), e1057367 (2015)
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