Publications of the MPI

51.

Journal Article

Thieme, C. J.; Rojas-Triana, M.; Stecyk, E.; Schudoma, C.; Zhang, W.; Yang, L.; Minambres, M.; Walther, D.; Schulze, W. X.; Paz-Ares, J. et al.; Scheible, W.-R.; Kragler, F.: Endogenous Arabidopsis messenger RNAs transported to distant tissues. Nature Plants 1, 15025 (2015)

MPG.PuRe

52.

Journal Article

Daloso, D. M.; Müller, K.; Obata, T.; Florian, A.; Tohge, T.; Bottcher, A.; Riondet, C.; Banat, L.; Carrari, F.; Nunes-Nesi, A. et al.; Buchanan, B. B.; Reichheld, J.-P.; Araujo, W. L.; Fernie, A. R.: Thioredoxin, a master regulator of the tricarboxylic acid cycle in plant mitochondria. Proceedings of the National Academy of Sciences of the USA 112 (11), pp. E1392 - E1400 (2015)

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53.

Journal Article

López, M.; Zanor, M.; Pratta, G.; Stegmayer, G.; Boggio, S.; Conte, M.; Bermúdez, L.; Coluccio Leskow, C.; Rodríguez, G.; Picardi, L. et al.; Zorzoli, R.; Fernie, A. R.; Milone, D.; Asís, R.; Valle, E.; Carrari, F.: Metabolic analyses of interspecific tomato recombinant inbred lines for fruit quality improvement. Metabolomics, pp. 1 - 16 (2015)

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54.

Journal Article

Zehrmann, A.; Haertel, B.; Glass, F.; Bayer-Csaszar, E.; Obata, T.; Meyer, E. H.; Brennicke, A.; Takenaka, M.: Selective Homo- and Heteromer Interactions between the Multiple Organellar RNA Editing Factor (MORF) Proteins in Arabidopsis thaliana. The Journal of Biological Chemistry 290 (10), pp. 6445 - 6456 (2015)

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55.

Journal Article

Amaya, I.; Osorio, S.; Martinez-Ferri, E.; Lima-Silva, V.; Doblas, V. G.; Fernandez-Munoz, R.; Fernie, A. R.; Botella, M. A.; Valpuesta, V.: Increased antioxidant capacity in tomato by ectopic expression of the strawberry D-galacturonate reductase gene. Biotechnology Journal 10 (3), pp. 490 - 500 (2015)

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56.

Journal Article

Clavel, M.; Pélissier, T.; Descombin, J.; Jean, V.; Picart, C.; Charbonel, C.; Saez-Vásquez, J.; Bousquet-Antonelli, C.; Deragon, J.-M.: Parallel action of AtDRB2 and RdDM in the control of transposable element expression. BMC Plant Biology 15, 70 (2015)

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57.

Journal Article

Delorge, I.; Figueroa, C. M.; Feil, R.; Lunn, J. E.; Van Dijck, P.: Trehalose-6-phosphate synthase 1 is not the only active TPS in Arabidopsis thaliana. Biochemical Journal 466, pp. 283 - 290 (2015)

MPG.PuRe

58.

Journal Article

Kleessen, S.; Irgang, S.; Klie, S.; Giavalisco, P.; Nikoloski, Z.: Integration of transcriptomics and metabolomics data specifies the metabolic response of Chlamydomonas to rapamycin treatment. The Plant Journal 81 (5), pp. 822 - 835 (2015)

MPG.PuRe

59.

Journal Article

Kohl, S.; Hollmann, J.; Erban, A.; Kopka, J.; Riewe, D.; Weschke, W.; Weber, H.: Metabolic and transcriptional transitions in barley glumes reveal a role as transitory resource buffers during endosperm filling. Journal of Experimental Botany 66 (5), pp. 1397 - 1411 (2015)

MPG.PuRe

60.

Journal Article

Khozaei, M.; Fisk, S.; Lawson, T.; Gibon, Y.; Sulpice, R.; Stitt, M.; Lefebvre, S. C.; Raines, C. A.: Overexpression of Plastid Transketolase in Tobacco Results in a Thiamine Auxotrophic Phenotype. Plant Cell 27 (2), pp. 432 - 447 (2015)

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61.

Journal Article

Obata, T.; Geigenberger, P.; Fernie, A. R.: Redox control of plant energy metabolism - the complex intertwined regulation of redox and metabolism in plant cells. The Biochemist 37, pp. 14 - 18 (2015)

MPG.PuRe

62.

Journal Article

Schwarz, N.; Armbruster, U.; Iven, T.; Brueckle, L.; Melzer, M.; Feussner, I.; Jahns, P.: Tissue-Specific Accumulation and Regulation of Zeaxanthin Epoxidase in Arabidopsis Reflect the Multiple Functions of the Enzyme in Plastids. Plant and Cell Physiology 56 (2 - SI), pp. 346 - 357 (2015)

MPG.PuRe

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63.

Journal Article

Allorent, G.; Osorio, S.; Vu, J. L.; Falconet, D.; Jouhet, J.; Kuntz, M.; Fernie, A. R.; Lerbs-Mache, S.; Macherel, D.; Courtois, F. et al.; Finazzi, G.: Adjustments of embryonic photosynthetic activity modulate seed fitness in Arabidopsis thaliana. New Phytologist 205 (2), pp. 707 - 719 (2015)

MPG.PuRe

64.

Journal Article

Alseekh, S.; Tohge, T.; Wendenburg, R.; Scossa, F.; Omranian, N.; Li, J.; Kleessen, S.; Giavalisco, P.; Pleban, T.; Mueller-Roeber, B. et al.; Zamir, D.; Nikoloski, Z.; Fernie, A. R.: Identification and mode of inheritance of quantitative trait Loci for secondary metabolite abundance in tomato. The Plant Cell 27 (3), pp. 485 - 512 (2015)

MPG.PuRe

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65.

Journal Article

Anoman, A. D.; Munoz-Bertomeu, J.; Rosa-Tellez, S.; Flores-Tornero, M.; Serrano, R.; Bueso, E.; Fernie, A. R.; Segura, J.; Ros, R.: Plastidial Glycolytic Glyceraldehyde-3-Phosphate Dehydrogenase Is an Important Determinant in the Carbon and Nitrogen Metabolism of Heterotrophic Cells in Arabidopsis. Plant Physiology 169 (3), pp. 1619 - 1637 (2015)

MPG.PuRe

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66.

Journal Article

Apelt, F.; Breuer, D.; Nikoloski, Z.; Stitt, M.; Kragler, F.: Phytotyping(4D): a light-field imaging system for non-invasive and accurate monitoring of spatio-temporal plant growth. The Plant Journal 82 (4), pp. 693 - 706 (2015)

MPG.PuRe

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67.

Journal Article

Arnold, A.; Sajitz-Hermstein, M.; Nikoloski, Z.: Effects of Varying Nitrogen Sources on Amino Acid Synthesis Costs in Arabidopsis thaliana under Different Light and Carbon-Source Conditions. PLoS One 10 (2), e0116536 (2015)

MPG.PuRe

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68.

Journal Article

Auer, J. S.; Nagel, A. C.; Schulz, A.; Wahl, V.; Preiss, A.: MAPK-dependent phosphorylation modulates the activity of Suppressor of Hairless in Drosophila. Cellular Signalling 27 (1), pp. 115 - 124 (2015)

MPG.PuRe

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69.

Journal Article

Auer, J. S.; Nagel, A. C.; Schulz, A.; Wahl, V.; Preiss, A.: Local overexpression of Su(H)-MAPK variants affects Notch target gene expression and adult phenotypes in Drosophila. Data in Brief 5 (Supplement C), pp. 852 - 863 (2015)

MPG.PuRe

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Full

70.

Journal Article

Avin-Wittenberg, T.; Bajdzienko, K.; Wittenberg, G.; Alseekh, S.; Tohge, T.; Bock, R.; Giavalisco, P.; Fernie, A. R.: Global Analysis of the Role of Autophagy in Cellular Metabolism and Energy Homeostasis in Arabidopsis Seedlings under Carbon Starvation. The Plant Cell 27 (2), pp. 306 - 322 (2015)

MPG.PuRe

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71.

Journal Article

Baerenfaller, K.; Massonnet, C.; Hennig, L.; Russenberger, D.; Sulpice, R.; Walsh, S.; Stitt, M.; Granier, C.; Gruissem, W.: A long photoperiod relaxes energy management in Arabidopsis leaf six. Current Plant Biology 2, pp. 34 - 45 (2015)

MPG.PuRe

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72.

Journal Article

Bar-Even, A.; Milo, R.; Noor, E.; Tawfik, D. S.: The Moderately Efficient Enzyme: Futile Encounters and Enzyme Floppiness. Biochemistry 54 (32), pp. 4969 - 4977 (2015)

MPG.PuRe

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73.

Journal Article

Barcelos, E.; Rios, S. d. A.; Cunha, R. N. V.; Lopes, R.; Motoike, S. Y.; Babiychuk, E.; Skirycz, A.; Kushnir, S.: Oil palm natural diversity and the potential for yield improvement. Frontiers in Plant Science 6, 190 (2015)

MPG.PuRe

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74.

Journal Article

Bauer, C.; Stec, K.; Glintschert, A.; Gruden, K.; Schichor, C.; Or-Guil, M.; Selbig, J.; Schuchhardt, J.: BioMiner: Paving the Way for Personalized Medicine. Cancer informatics 14, pp. 55 - 63 (2015)

MPG.PuRe

DOI

75.

Journal Article

Bielecka, M.; Watanabe, M.; Morcuende, R.; Scheible, W.-R.; Hawkesford, M. J.; Hesse, H.; Hoefgen, R.: Transcriptome and metabolome analysis of plant sulphate starvation and resupply provides novel information on transcriptional regulation of metabolism associated with sulphur, nitrogen and phosphorus nutritional responses in Arabidopsis. Frontiers in Plant Science 5, 805 (2015)

MPG.PuRe

DOI

76.

Journal Article

Bock, R.: Engineering plastid genomes: methods, tools, and applications in basic research and biotechnology. Annual Review of Plant Biology 66, pp. 211 - 241 (2015)

MPG.PuRe

DOI

77.

Journal Article

Bozek, K.; Wei, Y.; Yan, Z.; Liu, X.; Xiong, J.; Sugimoto, M.; Tomita, M.; Paeaebo, S.; Sherwood, C. C.; Hof, P. R. et al.; Ely, J. J.; Li, Y.; Steinhauser, D.; Willmitzer, L.; Giavalisco, P.; Khaitovich, P.: Organization and Evolution of Brain Lipidome Revealed by Large-Scale Analysis of Human, Chimpanzee, Macaque, and Mouse Tissues. Neuron 85 (4), pp. 695 - 702 (2015)

MPG.PuRe

78.

Journal Article

Breuer, D.; Nikoloski, Z.: DeFiNe: an optimisation-based method for robust disentangling of filamentous networks. Scientific Reports 5, 18267 (2015)

MPG.PuRe

DOI

79.

Journal Article

Bromke, M. A.; Hesse, H.: Phylogenetic analysis of methionine synthesis genes from Thalassiosira pseudonana. SpringerPlus 4, 391 (2015)

MPG.PuRe

DOI

80.

Journal Article

Bromke, M. A.; Hochmuth, A.; Tohge, T.; Fernie, A. R.; Giavalisco, P.; Burgos, A.; Willmitzer, L.; Brotman, Y.: Liquid chromatography high-resolution mass spectrometry for fatty acid profiling. The Plant Journal 81 (3), pp. 529 - 536 (2015)

MPG.PuRe

81.

Journal Article

Bromke, M. A.; Sabir, J. S.; Alfassi, F. A.; Hajarah, N. H.; Kabli, S. A.; Al-Malki, A. L.; Ashworth, M. P.; Meret, M.; Jansen, R. K.; Willmitzer, L.: Metabolomic Profiling of 13 Diatom Cultures and Their Adaptation to Nitrate-Limited Growth Conditions. PLoS One 10 (10), e0138965 (2015)

MPG.PuRe

DOI

82.

Journal Article

Brown, N. A.; dos Reis, T. F.; Ries, L. N. A.; Caldana, C.; Mah, J.-H.; Yu, J.-H.; Macdonald, J. M.; Goldman, G. H.: G-protein coupled receptor-mediated nutrient sensing and developmental control in Aspergillus nidulans. Molecular Microbiology 98 (3), pp. 420 - 439 (2015)

MPG.PuRe

DOI

83.

Journal Article

Brownfield, L.; Yi, J.; Jiang, H.; Minina, E. A.; Twell, D.; Köhler, C.: Organelles maintain spindle position in plant meiosis. Nature Communications 6 (1), 6492 (2015)

MPG.PuRe

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84.

Journal Article

Castellini, A.; Paltrinieri, D.; Manca, V.: MP-GeneticSynth: inferring biological network regulations from time series. Bioinformatics (Oxford, England) 31 (5), pp. 785 - 787 (2015)

MPG.PuRe

DOI

85.

Journal Article

Childs, D.; Grimbs, S.; Selbig, J.: Refined elasticity sampling for Monte Carlo-based identification of stabilizing network patterns. Bioinformatics 31 (12), pp. i214 - i220 (2015)

MPG.PuRe

DOI

86.

Journal Article

Cross, J. M.; Darrah, C.; Oraguzie, N.; Ahmadi, N.; Skirycz, A.: Editorial: Natural diversity in the new millennium. Frontiers in Plant Science 6, 897 (2015)

MPG.PuRe

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87.

Journal Article

Dobritzsch, S.; Weyhe, M.; Schubert, R.; Dindas, J.; Hause, G.; Kopka, J.; Hause, B.: Dissection of jasmonate functions in tomato stamen development by transcriptome and metabolome analyses. BMC Biology 13, 28 (2015)

MPG.PuRe

DOI

88.

Journal Article

Duan, G. Y.; Walther, D.: The Roles of Post-translational Modifications in the Context of Protein Interaction Networks. PLoS Computational Biology 11 (2), e1004049 (2015)

MPG.PuRe

DOI

89.

Journal Article

Duan, G. Y.; Walther, D.: Computational phosphorylation network reconstruction: methods and resources. Methods in Molecular Biology 1306, pp. 177 - 194 (2015)

MPG.PuRe

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90.

Journal Article

Eastmond, P. J.; Astley, H. M.; Parsley, K.; Aubry, S.; Williams, B. P.; Menard, G. N.; Craddock, C. P.; Nunes-Nesi, A.; Fernie, A. R.; Hibberd, J. M.: Arabidopsis uses two gluconeogenic gateways for organic acids to fuel seedling establishment. Nature Communications 6, 6659 (2015)

MPG.PuRe

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91.

Journal Article

Emadpour, M.; Karcher, D.; Bock, R.: Boosting riboswitch efficiency by RNA amplification. Nucleic Acids Research 43 (10), e66 (2015)

MPG.PuRe

DOI

92.

Journal Article

Endler, A.; Kesten, C.; Schneider, R.; Zhang, Y.; Ivakov, A.; Fröhlich, A.; Funke, N.; Persson, S.: A Mechanism for Sustained Cellulose Synthesis during Salt Stress. Cell 162 (6), pp. 1353 - 1364 (2015)

MPG.PuRe

DOI

93.

Journal Article

Engqvist, M. K. M.; Schmitz, J.; Gertzmann, A.; Florian, A.; Jaspert, N.; Arif, M.; Balazadeh, S.; Mueller-Roeber, B.; Fernie, A. R.; Maurino, V. G.: GLYCOLATE OXIDASE3, a Glycolate Oxidase Homolog of Yeast l-Lactate Cytochrome c Oxidoreductase, Supports l-Lactate Oxidation in Roots of Arabidopsis. Plant Physiology 169 (2), pp. 1042 - 61 (2015)

MPG.PuRe

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94.

Journal Article

Estevez, S.; Nikoloski, Z.: Context-Specific Metabolic Model Extraction Based on Regularized Least Squares Optimization. PLoS One 10 (7), e0131875 (2015)

MPG.PuRe

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95.

Journal Article

Fala, A. M.; Oliveira, J. F.; Adamoski, D.; Aricetti, J. A.; Dias, M. M.; Dias, M. V. B.; Sforca, M. L.; Lopes-de-Oliveira, P. S.; Rocco, S. A.; Caldana, C. et al.; Dias, S. M. G.; Ambrosio, A. L. B.: Unsaturated fatty acids as high-affinity ligands of the C-terminal Per-ARNT-Sim domain from the Hypoxia-inducible factor 3 alpha. Scientific Reports 5, 12698 (2015)

MPG.PuRe

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96.

Journal Article

Fernie, A. R.; Tohge, T.: Location, location, location - no more! The unravelling of chromatin remodeling regulatory aspects of plant metabolic gene clusters. New Phytologist 205 (2), pp. 458 - 460 (2015)

MPG.PuRe

97.

Journal Article

Fernie, A. R.; Tohge, T.: A cross-kingdom history. eLife 4, e07527 (2015)

MPG.PuRe

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98.

Journal Article

Fernie, A. R.; Toth, S. Z.: Identification of the Elusive Chloroplast Ascorbate Transporter Extends the Substrate Specificity of the PHT Family. Molecular Plant 8 (5), pp. 674 - 676 (2015)

MPG.PuRe

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99.

Journal Article

Figueiredo, D.D.; Batista, R. A.; Roszak, P. J.; Köhler, C.: Auxin production couples endosperm development to fertilization. Nature Plants 1 (12), 15184 (2015)

MPG.PuRe

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100.

Journal Article

Fisahn, J.; Klingele, E.; Barlow, P.: Lunar gravity affects leaf movement of Arabidopsis thaliana in the International Space Station. Planta 241 (6), pp. 1509 - 1518 (2015)

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Journal Article (172)