Publications of the MPI

51.

Journal Article

Araujo, W. L.; Tohge, T.; Nunes-Nesi, A.; Obata, T.; Fernie, A. R.: Analysis of Kinetic Labeling of Amino Acids and Organic Acids by GC-MS. Methods in molecular biology 1090, pp. 107 - 119 (2014)

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52.

Journal Article

Arrivault, S.; Guenther, M.; Florian, A.; Encke, B.; Feil, R.; Vosloh, D.; Lunn, J. E.; Sulpice, R.; Fernie, A. R.; Stitt, M. et al.; Schulze, W. X.: Dissecting the Subcellular Compartmentation of Proteins and Metabolites in Arabidopsis Leaves Using Non-aqueous Fractionation. Molecular and Cellular Proteomics 13 (9), pp. 2246 - 2259 (2014)

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53.

Journal Article

Avin-Wittenberg, T.; Fernie, A. R.: At Long Last: Evidence for Pexophagy in Plants. Molecular Plant 7 (8), pp. 1257 - 1260 (2014)

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54.

Journal Article

Ay, N.; Raum, U.; Balazadeh, S.; Seidensticker, T.; Fischer, A.; Reuter, G.; Humbeck, K.: Regulatory Factors of Leaf Senescence are Affected in Arabidopsis Plants Overexpressing the Histone Methyltransferase SUVH2. Journal of Plant Growth Regulation 33 (1), pp. 119 - 136 (2014)

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55.

Journal Article

Balazadeh, S.: Stay-Green Not Always Stays Green. Molecular Plant 7 (8), pp. 1264 - 1266 (2014)

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56.

Journal Article

Bastias, A.; Yanez, M.; Osorio, S.; Arbona, V.; Gomez-Cadenas, A.; Fernie, A. R.; Casaretto, J. A.: The transcription factor AREB1 regulates primary metabolic pathways in tomato fruits. Journal of Experimental Botany 65 (9), pp. 2351 - 63 (2014)

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57.

Journal Article

Bermúdez, L.; de Godoy, F.; Balder, P.; Demarco, D.; Osorio, S.; Quadrana, L.; Almeida, J.; Asis, R.; Gibon, Y.; Fernie, A. R. et al.; Rossi, M.; Carrari, F.: Silencing of the tomato Sugar Partitioning Affecting protein (SPA), modifies sink strength through a shift in leaf sugar metabolism. The Plant Journal 77 (5), pp. 676 - 687 (2014)

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58.

Journal Article

Bolger, A. M.; Lohse, M.; Usadel, B.: Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics 30 (15), pp. 2114 - 2120 (2014)

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59.

Journal Article

Bolger, M. E.; Weisshaar, B.; Scholz, U.; Stein, N.; Usadel, B.; Mayer, K. F.: Plant genome sequencing — applications for crop improvement. Current Opinion in Biotechnology 26, pp. 31 - 37 (2014)

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60.

Journal Article

Bozek, K.; Wei, Y.; Yan, Z.; Liu, X.; Xiong, J.; Sugimoto, M.; Tomita, M.; Paeaebo, S.; Pieszek, R.; Sherwood, C. C. et al.; Hof, P. R.; Ely, J. J.; Steinhauser, D.; Willmitzer, L.; Bangsbo, J.; Hansson, O.; Call, J.; Giavalisco, P.; Khaitovich, P.: Exceptional Evolutionary Divergence of Human Muscle and Brain Metabolomes Parallels Human Cognitive and Physical Uniqueness. PLoS Biology 12 (5), e1001871 (2014)

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61.

Journal Article

Breuer, D.; Ivakov, A.; Sampathkumar, A.; Hollandt, F.; Persson, S.; Nikoloski, Z.: Quantitative analyses of the plant cytoskeleton reveal underlying organizational principles. Interface: Journal of the Royal Society 11 (97), 20140362 (2014)

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62.

Journal Article

Breuer, D.; Nikoloski, Z.: img2net: automated network-based analysis of imaged phenotypes. Bioinformatics 30 (22), pp. 3291 - 2 (2014)

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63.

Journal Article

Breuer, D.; Timme, M.; Memmesheimer, R.-M.: Statistical Physics of Neural Systems with Nonadditive Dendritic Coupling. Physical Review X 4 (1), 011053 (2014)

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64.

Journal Article

Bucher, M.; Hause, B.; Krajinski, F.; Kuester, H.: Through the doors of perception to function in arbuscular mycorrhizal symbioses. New Phytologist 204 (4), pp. 833 - 840 (2014)

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65.

Journal Article

Carbonnel, S.; Gutjahr, C.: Control of arbuscular mycorrhiza development by nutrient signals. Frontiers in Plant Science 5, 462 (2014)

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66.

Journal Article

Cavalcanti, J. H. F.; Esteves-Ferreira, A. A.; Quinhones, C. G. S.; Pereira-Lima, I. A.; Nunes-Nesi, A.; Fernie, A. R.; Araujo, W. L.: Evolution and functional implications of the tricarboxylic acid cycle as revealed by phylogenetic analysis. Genome biology and evolution 6 (10), pp. 2830 - 48 (2014)

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67.

Journal Article

Chae, E.; Bomblies, K.; Kim, S.-T.; Karelina, D.; Zaidem, M.; Ossowski, S.; Martín-Pizarro, C.; Laitinen, R.; Rowan, B.; Tenenboim, H. et al.; Lechner, S.; Demar, M.; Habring-Müller, A.; Lanz, C.; Rätsch, G.; Weigel, D.: Species-wide Genetic Incompatibility Analysis Identifies Immune Genes as Hot Spots of Deleterious Epistasis. Cell 159 (6), pp. 1341 - 1351 (2014)

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68.

Journal Article

Chen, S.; Wu, S.; Li, W.; Chen, X.; Dong, X.; Tan, G.; Zhang, H.; Hong, Z.; Zhu, Z.; Chai, Y.: Investigation of the therapeutic effectiveness of active components in Sini decoction by a comprehensive GC/LC-MS based metabolomics and network pharmacology approaches. Molecular BioSystems 10 (12), pp. 3310 - 3321 (2014)

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69.

Journal Article

Chew, Y. H.; Wenden, B.; Flis, A.; Mengin, V.; Taylor, J.; Davey, C. L.; Tindal, C.; Thomas, H.; Ougham, H. J.; de Reffye, P. et al.; Stitt, M.; Williams, M.; Muetzelfeldt, R.; Halliday, K. J.; Millar, A. J.: Multiscale digital Arabidopsis predicts individual organ and whole-organism growth. Proceedings of the National Academy of Sciences of the United States of America 111 (39), pp. E4127 - E4136 (2014)

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70.

Journal Article

Dang, N. X. D.; Popova, A. V.; Hundertmark, M.; Hincha, D. K.: Functional characterization of selected LEA proteins from Arabidopsis thaliana in yeast and in vitro. Planta 240, pp. 325 - 336 (2014)

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71.

Journal Article

Dasgupta, K.; Khadilkar, A.S.; Sulpice, R.; Pant, B.; Scheible, W.-R.; Fisahn, J.; Stitt, M.; Ayre, B.G.: Expression of sucrose transporter cDNAs specifically in companion cells enhances phloem loading and long-distance transport of sucrose but leads to an inhibition of growth and the perception of a phosphate limitation. Plant Physiology 165 (2), pp. 715 - 731 (2014)

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72.

Journal Article

Delgado, R.; Munoz, Y.; Pena-Cortes, H.; Giavalisco, P.; Bacigalupo, J.: Diacylglycerol Activates the Light-Dependent Channel TRP in the Photosensitive Microvilli of Drosophila melanogaster Photoreceptors. The Journal of Neuroscience 34 (19), pp. 6679 - 6686 (2014)

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73.

Journal Article

Devanathan, S.; Erban, A.; Perez-Torres Jr., R.; Kopka, J.; Makaroff, C. A.: Arabidopsis thaliana Glyoxalase 2-1 Is Required during Abiotic Stress but Is Not Essential under Normal Plant Growth. PLOS ONE 9 (4), e95971 (2014)

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74.

Journal Article

Eckert, C.; Offenborn, J. N.; Heinz, T.; Armarego-Marriott, T.; Schültke, S.; Zhang, C.; Hillmer, S.; Heilmann, M.; Schumacher, K.; Bock, R. et al.; Heilmann, I.; Kudla, J.: The vacuolar calcium sensors CBL2 and CBL3 affect seed size and embryonic development in Arabidopsis thaliana. The Plant Journal 78 (1), pp. 146 - 156 (2014)

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75.

Journal Article

Ehrnthaler, M.; Scharff, L. B.; Fleischmann, T. T.; Hasse, C.; Ruf, S.; Bock, R.: Synthetic Lethality in the Tobacco Plastid Ribosome and Its Rescue at Elevated Growth Temperatures. The Plant Cell 26 (2), pp. 765 - 776 (2014)

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76.

Journal Article

Estevez, S.; Nikoloski, Z.: Generalized framework for context-specific metabolic model extraction methods. Frontiers in Plant Science 5, p. 491 - 491 (2014)

MPG.PuRe

77.

Journal Article

Fernandez-Calvino, L.; Osorio, S.; Hernandez, M. L.; Hamada, I. B.; Del Toro, F. J.; Donaire, L.; Yu, A.; Bustos, R.; Fernie, A. R.; Martinez-Rivas, J. M. et al.; Llave, C.: Virus-Induced Alterations in Primary Metabolism Modulate Susceptibility to Tobacco rattle virus in Arabidopsis. Plant Physiology 166 (4), pp. 1821 - 38 (2014)

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78.

Journal Article

Figueiredo, D.D.; Köhler, C.: Signalling events regulating seed coat development. Biochemical Society Transactions 42, pp. 358 - 363 (2014)

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79.

Journal Article

Florian, A.; Nikoloski, Z.; Sulpice, R.; Timm, S.; Araujo, W. L.; Tohge, T.; Bauwe, H.; Fernie, A. R.: Analysis of Short-Term Metabolic Alterations in Arabidopsis Following Changes in the Prevailing Environmental Conditions. Molecular Plant 7 (5 - SI), pp. 893 - 911 (2014)

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80.

Journal Article

Florian, A.; Timm, S.; Nikoloski, Z.; Tohge, T.; Bauwe, H.; Araujo, W. L.; Fernie, A. R.: Analysis of metabolic alterations in Arabidopsis following changes in the carbon dioxide and oxygen partial pressures. Journal of Integrative Plant Biology 56 (9 - SI), pp. 941 - 959 (2014)

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81.

Journal Article

Fristed, R.; Scharff, L. B.; Clarke, C.; Wang, Q.; Lin, C.; Merchant, S.; Bock, R.: RBF1, a Plant Homolog of the Bacterial Ribosome-Binding Factor RbfA, Acts in Processing of the Chloroplast 16S Ribosomal RNA. Plant Physiology 164 (1), pp. 201 - 215 (2014)

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82.

Journal Article

Fuentes, I.; Stegemann, S.; Golczyk, H.; Karcher, D.; Bock, R.: Horizontal genome transfer as an asexual path to the formation of new species. Nature 511 (7508), pp. 232 - 235 (2014)

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83.

Journal Article

Fujikura, U.; Elsaesser, L.; Breuninger, H.; Sanchez-Rodriguez, C.; Ivakov, A.; Laux, T.; Findlay, K.; Persson, S.; Lenhard, M.: Atkinesin-13A Modulates Cell-Wall Synthesis and Cell Expansion in Arabidopsis thaliana via the THESEUS1 Pathway. PLoS Genetics 10 (9), e1004627 (2014)

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84.

Journal Article

Gadeyne, A.; Sanchez-Rodriguez, C.; Vanneste, S.; Di Rubbo, S.; Zauber, H.; Vanneste, K.; Van Leene, J.; De Winne, N.; Eeckhout, D.; Persiau, G. et al.; De Slijke, E. V.; Cannoot, B.; Vercruysse, L.; Mayers, J. R.; Adamowski, M.; Kania, U.; Ehrlich, M.; Schweighofer, A.; Ketelaar, T.; Maere, S.; Bednarek, S. Y.; Friml, J.; Gevaert, K.; Witters, E.; Russinova, E.; Persson, S.; De Jaeger, G.; Van Damme, D.: The TPLATE Adaptor Complex Drives Clathrin-Mediated Endocytosis in Plants. Cell 156 (4), pp. 691 - 704 (2014)

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85.

Journal Article

Gago, J.; Douthe, C.; Florez-Sarasa, I. D.; Escalona, J. M.; Galmes, J.; Fernie, A. R.; Flexas, J.; Medrano, H.: Opportunities for improving leaf water use efficiency under climate change conditions. Plant Science 226, pp. 108 - 119 (2014)

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86.

Journal Article

Galili, G.; Avin-Wittenberg, T.; Angelovici, R.; Fernie, A. R.: The role of photosynthesis and amino acid metabolism in the energy status during seed development. Frontiers in Plant Science 5, 447 (2014)

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87.

Journal Article

Gallep, C. M.; Moraes, T. A.; Cervinkova, K.; Cifra, M.; Katsumata, M.; Barlow, P. W.: Lunisolar tidal synchronism with biophoton emission during intercontinental wheat-seedling germination tests. Plant Signaling & Behavior 9 (3), p. e28671 - e28671 (2014)

MPG.PuRe

88.

Journal Article

Gao, J.; van Kleeff, P. J. M.; Oecking, C.; Li, K. W.; Erban, A.; Kopka, J.; Hincha, D. K.; de Boer, A. H.: Light modulated activity of root alkaline/neutral invertase involves the interaction with 14-3-3 proteins. The Plant Journal 80 (5), pp. 785 - 796 (2014)

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89.

Journal Article

Gechev, T. G.; Hille, J.; Woerdenbag, H. J.; Benina, M.; Mehterov, N.; Toneva, V.; Fernie, A. R.; Mueller-Roeber, B.: Natural products from resurrection plants: Potential for medical applications. Biotechnology Advances 32 (6), pp. 1091 - 1101 (2014)

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90.

Journal Article

Geigenberger, P.; Fernie, A. R.: Metabolic Control of Redox and Redox Control of Metabolism in Plants. Antioxidants Redox Signaling 21 (9), pp. 1389 - 1421 (2014)

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91.

Journal Article

Giuntoli, B.; Lee, S. C.; Licausi, F.; Kosmacz, M.; Oosumi, T.; van Dongen, J. T.; Bailey-Serres, J.; Perata, P.: A Trihelix DNA Binding Protein Counterbalances Hypoxia-Responsive Transcriptional Activation in Arabidopsis. PLoS Biology 12 (9), e1001950 (2014)

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92.

Journal Article

Glaubitz, U.; Li, X.; Koehl, K. I.; van Dongen, J. T.; Hincha, D. K.; Zuther, E.: Differential physiological responses of different rice (Oryza sativa) cultivars to elevated night temperature during vegetative growth. Functional Plant Biology 41 (4), pp. 437 - 448 (2014)

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93.

Journal Article

Golczyk, H.; Greiner, S.; Wanner, G.; Weihe, A.; Bock, R.; Börner, T.; Herrmann, R. G.: Chloroplast DNA in mature and senescing leaves - a reappraisal. The Plant Cell 26 (3), pp. 847 - 854 (2014)

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94.

Journal Article

Golczyk, H.; Massouh, A.; Greiner, S.: Translocations of Chromosome End-Segments and Facultative Heterochromatin Promote Meiotic Ring Formation in Evening Primroses. The Plant Cell 26 (3), pp. 1280 - 1293 (2014)

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95.

Journal Article

Guo, K.-T.; Fu, P.; Juerchott, K.; Motaln, H.; Selbig, J.; Lah, T.; Tonn, J.-C.; Schichor, C.: The expression of Wnt-inhibitor DKK1 (Dickkopf 1) is determined by intercellular crosstalk and hypoxia in human malignant gliomas. Journal of Cancer Research and Clinical Oncology 140 (8), pp. 1261 - 1270 (2014)

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96.

Journal Article

Guo, K.; Zou, W.; Feng, Y.; Zhang, M.; Zhang, J.; Tu, F.; Xie, G.; Wang, L.; Wang, Y.; Klie, S. et al.; Persson, S.; Peng, L.: An integrated genomic and metabolomic framework for cell wall biology in rice. BMC Genomics 15, 596 (2014)

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97.

Journal Article

Hansen, B. O.; Vaid, N.; Musialak-Lange, M.; Janowski, M.; Mutwil, M.: Elucidating gene function and function evolution through comparison of co-expression networks of plants. Frontiers in Plant Science 5, 494 (2014)

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98.

Journal Article

Heise, R.; Arrivault, S.; Szecowka, M.; Tohge, T.; Nunes-Nesi, A.; Stitt, M.; Nikoloski, Z.; Fernie, A. R.: Flux profiling of photosynthetic carbon metabolism in intact plants. Nature Protocols 9 (8), pp. 1803 - 1824 (2014)

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99.

Journal Article

Hemme, D.; Veyel, D.; Mühlhaus, T.; Sommer, F.; Jueppner, J.; Unger, A.-K.; Sandmann, M.; Fehrle, I.; Schönfelder, S.; Steup, M. et al.; Geimer, S.; Kopka, J.; Giavalisco, P.; Schroda, M.: Systems-Wide Analysis of Acclimation Responses to Long-Term Heat Stress and Recovery in the Photosynthetic Model Organism Chlamydomonas reinhardtii. The Plant Cell 26 (11), pp. 4270 - 4297 (2014)

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100.

Journal Article

Henry, C.; Bledsoe, S. W.; Siekman, A.; Kollman, A.; Waters, B. M.; Feil, R.; Stitt, M.; Lagrimini, L. M.: The trehalose pathway in maize: conservation and gene regulation in response to the diurnal cycle and extended darkness. Journal of Experimental Botany 65 (20), pp. 5959 - 5973 (2014)

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Journal Article (190)