Journal Article (193)

51.
Journal Article
Delgado-Cerezo, M.; Sanchez-Rodriguez, C.; Escudero, V.; Miedes, E.; Fernandez, P. V.; Jorda, L.; Hernandez-Blanco, C.; Sanchez-Vallet, A.; Bednarek, P.; Schulze-Lefert, P. et al.; Somerville, S.; Estevez, J. M.; Persson, S.; Molina, A.: Arabidopsis Heterotrimeric G-protein Regulates Cell Wall Defense and Resistance to Necrotrophic Fungi. Molecular Plant 5 (1), pp. 98 - 114 (2012)
52.
Journal Article
Detmann, K. C.; Araujo, W. L.; Martins, S. C. V.; Sanglard, L. M. V. P.; Reis, J. V.; Detmann, E.; Rodrigues, F. A.; Nunes-Nesi, A.; Fernie, A. R.; DaMatta, F. M.: Silicon nutrition increases grain yield, which, in turn, exerts a feed-forward stimulation of photosynthetic rates via enhanced mesophyll conductance and alters primary metabolism in rice. New Phytologist 196 (3), pp. 752 - 762 (2012)
53.
Journal Article
Draffehn, A. M.; Durek, P.; Nunes-Nesi, A.; Stich, B.; Fernie, A. R.; Gebhardt, C.: Tapping natural variation at functional level reveals allele specific molecular characteristics of potato invertase Pain-1. Plant, Cell and Environment 35 (12), pp. 2143 - 2154 (2012)
54.
Journal Article
Dunn, W. B.; Erban, A.; Weber, R. J. M.; Creek, D. J.; Brown, M.; Breitling, R.; Hankemeier, T.; Goodacre, R.; Neumann, S.; Kopka, J. et al.; Viant, M. R.: Mass appeal: metabolite identification in mass spectrometry-focused untargeted metabolomics. Metabolomics 9 (S1), pp. 44 - 66 (2012)
55.
Journal Article
Engelsberger, W. R.; Schulze, W. X.: Nitrate and ammonium lead to distinct global dynamic phosphorylation patterns when resupplied to nitrogen-starved Arabidopsis seedlings. Plant Journal 69 (6), pp. 978 - 995 (2012)
56.
Journal Article
Esmaeilpour-Jahromi, M.; Ahmadi, A.; Lunn, J. E.; Abbasi, A.; Poustini, K.; Joudi, M.: Variation in grain weight among Iranian wheat cultivars: the importance of stem carbohydrate reserves in determining final grain weight under source limited conditions. Australian Journal of Crop Science 6, pp. 1508 - 1515 (2012)
57.
Journal Article
Faix, B.; Radchuk, V.; Nerlich, A.; Hummer, C.; Radchuk, R.; Emery, R. J. N.; Keller, H.; Gotz, K. P.; Weschke, W.; Geigenberger, P. et al.; Weber, H.: Barley grains, deficient in cytosolic small subunit of ADP-glucose pyrophosphorylase, reveal coordinate adjustment of C:N metabolism mediated by an overlapping metabolic-hormonal control. Plant Journal 69 (6), pp. 1077 - 1093 (2012)
58.
Journal Article
Fernandez, O.; Theocharis, A.; Bordiec, S.; Feil, R.; Jacquens, L.; Clement, C.; Fontaine, F.; Barka, E. A.: Burkholderia phytofirmans PsJN Acclimates Grapevine to Cold by Modulating Carbohydrate Metabolism. Molecular Plant-Microbe Interactions 25 (4), pp. 496 - 504 (2012)
59.
Journal Article
Fernandez, O.; Vandesteene, L.; Feil, R.; Baillieul, F.; Lunn, J. E.; Clement, C.: Trehalose metabolism is activated upon chilling in grapevine and might participate in Burkholderia phytofirmans induced chilling tolerance. Planta 236 (2), pp. 355 - 369 (2012)
60.
Journal Article
Fernie, A. R.: Grand Challenges in Plant Systems Biology: Closing the Circle(s). Frontiers in Plant Science 3, p. 35 (2012)
61.
Journal Article
Fernie, A. R.; Obata, T.; Allen, A. E.; Araujo, W. L.; Bowler, C.: Leveraging metabolomics for functional investigations in sequenced marine diatoms. Trends in Plant Science 17 (7), pp. 395 - 403 (2012)
62.
Journal Article
Fernie, A. R.; Stitt, M.: On the discordance of metabolomics with proteomics and transcriptomics: coping with increasing complexity in logic, chemistry, and network interactions scientific correspondence. Plant Physiology 158 (3), pp. 1139 - 1145 (2012)
63.
Journal Article
Ferraro, G.; Bortolotti, S.; Mortera, P.; Schlereth, A.; Stitt, M.; Carrari, F.; Kamenetzky, L.; Valle, E. M.: Novel glutamate dehydrogenase genes show increased transcript and protein abundances in mature tomato fruits. Journal of Plant Physiology 169 (9), pp. 899 - 907 (2012)
64.
Journal Article
Fichtenbauer, D.; Xu, X. M.; Jackson, D.; Kragler, F.: The chaperonin CCT8 facilitates spread of tobamovirus infection. Plant Signaling & Behavior 7 (3), pp. 318 - 321 (2012)
65.
Journal Article
Fisahn, J.; Yazdanbakhsh, N.; Klingele, E.; Barlow, P.: Arabidopsis thaliana root growth kinetics and lunisolar tidal acceleration. New Phytologist 195 (2), pp. 346 - 355 (2012)
66.
Journal Article
Fitzpatrick, T. B.; Basset, G. J.; Borel, P.; Carrari, F.; DellaPenna, D.; Fraser, P. D.; Hellmann, H.; Osorio, S.; Rothan, C.; Valpuesta, V. et al.; Caris-Veyrat, C.; Fernie, A. R.: Vitamin deficiencies in humans: can plant science help? The Plant Cell 24 (2), pp. 395 - 414 (2012)
67.
Journal Article
Flamholz, A.; Noor, E.; Bar-Even, A.; Milo, R.: eQuilibrator-the biochemical thermodynamics calculator. Nucleic Acids Research 40 (D1), pp. D770 - D775 (2012)
68.
Journal Article
Florez-Sarasa, I.; Araujo, W. L.; Wallstrom, S. V.; Rasmusson, A. G.; Fernie, A. R.; Ribas-Carbo, M.: Light-responsive metabolite and transcript levels are maintained following a dark-adaptation period in leaves of Arabidopsis thaliana. New Phytologist 195 (1), pp. 136 - 148 (2012)
69.
Journal Article
Fuehrs, H.; Specht, A.; Erban, A.; Kopka, J.; Horst, W. J.: Functional associations between the metabolome and manganese tolerance in Vigna unguiculata. Journal of Experimental Botany 63 (1), pp. 329 - 340 (2012)
70.
Journal Article
Fuentes, I.; Karcher, D.; Bock, R.: Experimental reconstruction of the functional transfer of intron-containing plastid genes to the nucleus. Current Biology 22 (9), pp. 763 - 771 (2012)
71.
Journal Article
Gaude, N.; Bortfeld, S.; Duensing, N.; Lohse, M.; Krajinski, F.: Arbuscule-containing and non-colonized cortical cells of mycorrhizal roots undergo extensive and specific reprogramming during arbuscular mycorrhizal development. Plant Journal 69 (3), pp. 510 - 528 (2012)
72.
Journal Article
Gaude, N.; Schulze, W. X.; Franken, P.; Krajinski, F.: Cell type-specific protein and transcription profiles implicate periarbuscular membrane synthesis as an important carbon sink in the mycorrhizal symbiosis. Plant Signaling & Behavior 7 (4), pp. 461 - 464 (2012)
73.
Journal Article
Gechev, T. S.; Benina, M.; Obata, T.; Tohge, T.; Sujeeth, N.; Minkov, I.; Hille, J.; Temanni, M. R.; Marriott, A. S.; Bergstrom, E. et al.; Thomas-Oates, J.; Antonio, C.; Mueller-Roeber, B.; Schippers, J. H.; Fernie, A. R.; Toneva, V.: Molecular mechanisms of desiccation tolerance in the resurrection glacial relic Haberlea rhodopensis. Cellular and Molecular Life Sciences 70 (4), pp. 689 - 709 (2012)
74.
Journal Article
Geisler, D. A.; Päpke, C.; Obata, T.; Nunes-Nesi, A.; Matthes, A.; Schneitz, K.; Maximova, E.; Araujo, W. L.; Fernie, A. R.; Persson, S.: Downregulation of the delta-Subunit Reduces Mitochondrial ATP Synthase Levels, Alters Respiration, and Restricts Growth and Gametophyte Development in Arabidopsis. The Plant Cell 24 (7), pp. 2792 - 2811 (2012)
75.
Journal Article
Girbig, D.; Grimbs, S.; Selbig, J.: Systematic Analysis of Stability Patterns in Plant Primary Metabolism. PLoS One 7 (4), p. e34686 (2012)
76.
Journal Article
Girbig, D.; Selbig, J.; Grimbs, S.: A MATLAB toolbox for structural kinetic modeling. Bioinformatics 28 (19), pp. 2546 - 2547 (2012)
77.
Journal Article
Gomez, S.; Steinbrenner, A. D.; Osorio, S.; Schueller, M.; Ferrieri, R. A.; Fernie, A. R.; Orians, C. M.: From shoots to roots: transport and metabolic changes in tomato after simulated feeding by a specialist lepidopteran. Entomologia Experimentalis et Applicata 144 (1), pp. 101 - 111 (2012)
78.
Journal Article
Gouws, L. M.; Botes, E.; Wiese, A. J.; Trenkamp, S.; Torres-Jerez, I.; Tang, Y.; Hills, P. N.; Usadel, B.; Lloyd, J. R.; Fernie, A. R. et al.; Kossmann, J.; van der Merwe, M. J.: The plant growth promoting substance, lumichrome, mimics starch, and ethylene-associated symbiotic responses in lotus and tomato roots. Frontiers in Plant Science 3, p. 120 (2012)
79.
Journal Article
Gruden, K.; Hren, M.; Herman, A.; Blejec, A.; Albrecht, T.; Selbig, J.; Bauer, C.; Schuchardt, J.; Or-Guil, M.; Zupancic, K. et al.; Svajger, U.; Stabuc, B.; Ihan, A.; Kopitar, A. N.; Ravnikar, M.; Knezevic, M.; Rozman, P.; Jeras, M.: A "Crossomics" Study Analysing Variability of Different Components in Peripheral Blood of Healthy Caucasoid Individuals. PLoS One 7 (1), p. e28761 (2012)
80.
Journal Article
Güell, O.; Sagués, F.; Basler, G.; Nikoloski, Z.; Serrano, M. S.: Assessing the significance of knockout cascades in metabolic networks. Journal of Computational Interdisciplinary Sciences 3 (1-2), pp. 45 - 53 (2012)
81.
Journal Article
Guo, K. T.; Juerchott, K.; Fu, P.; Selbig, J.; Eigenbrod, S.; Tonn, J. C.; Schichor, C.: Isolation and Characterization of Bone Marrow-derived Progenitor Cells from Malignant Gliomas. Anticancer Research 32 (11), pp. 4971 - 4982 (2012)
82.
Journal Article
Gupta, K. J.; Shah, J. K.; Brotman, Y.; Jahnke, K.; Willmitzer, L.; Kaiser, W. M.; Bauwe, H.; Igamberdiev, A. U.: Inhibition of aconitase by nitric oxide leads to induction of the alternative oxidase and to a shift of metabolism towards biosynthesis of amino acids. Journal of Experimental Botany 63 (4), pp. 1773 - 1784 (2012)
83.
Journal Article
Hackenberg, C.; Huege, J.; Engelhardt, A.; Wittink, F.; Laue, M.; Matthijs, H. C.; Kopka, J.; Bauwe, H.; Hagemann, M.: Low-carbon acclimation in carboxysome-less and photorespiratory mutants of the cyanobacterium Synechocystis sp. strain PCC 6803. Microbiology 158 (Pt 2), pp. 398 - 413 (2012)
84.
Journal Article
Haedrich, N.; Hendriks, J. H.; Koetting, O.; Arrivault, S.; Feil, R.; Zeeman, S. C.; Gibon, Y.; Schulze, W. X.; Stitt, M.; Lunn, J. E.: Mutagenesis of cysteine 81 prevents dimerization of the APS1 subunit of ADP-glucose pyrophosphorylase and alters diurnal starch turnover in Arabidopsis thaliana leaves. Plant Journal 70 (2), pp. 231 - 242 (2012)
85.
Journal Article
Hartmann, S.; Helm, C.; Nickel, B.; Meyer, M.; Struck, T. H.; Tiedemann, R.; Selbig, J.; Bleidorn, C.: Exploiting Gene Families for Phylogenomic Analysis of Myzostomid Transcriptome Data. PLoS One 7 (1), p. e29843 (2012)
86.
Journal Article
Hebbelmann, I.; Selinski, J.; Wehmeyer, C.; Goss, T.; Voss, I.; Mulo, P.; Kangasjarvi, S.; Aro, E.-M.; Oelze, M. L.; Dietz, K. J. et al.; Nunes-Nesi, A.; Do, P. T.; Fernie, A. R.; Talla, S. K.; Raghavendra, A. S.; Linke, V.; Scheibe, R.: Multiple strategies to prevent oxidative stress in Arabidopsis plants lacking the malate valve enzyme NADP-malate dehydrogenase. Journal of Experimental Botany 63 (3), pp. 1445 - 1459 (2012)
87.
Journal Article
Hincha, D. K.; Thalhammer, A.: LEA proteins: IDPs with versatile functions in cellular dehydration tolerance. Biochemical Society Transactions 40 (5), pp. 1000 - 1003 (2012)
88.
Journal Article
Hische, M.; Larhlimi, A.; Schwarz, F.; Fischer-Rosinsky, A.; Bobbert, T.; Assmann, A.; Catchpole, G. S.; Pfeiffer, A. F.; Willmitzer, L.; Selbig, J. et al.; Spranger, J.: A distinct metabolic signature predicts development of fasting plasma glucose. Journal of Clinical Bioinformatics 2 (1), p. 3 (2012)
89.
Journal Article
Hubberten, H. M.; Drozd, A.; Tran, B. V.; Hesse, H.; Hoefgen, R.: Local and systemic regulation of sulfur homeostasis in roots of Arabidopsis thaliana. Plant Journal 72 (4), pp. 625 - 635 (2012)
90.
Journal Article
Hubberten, H.-M.; Klie, S.; Caldana, C.; Degenkolbe, T.; Willmitzer, L.; Hoefgen, R.: An additional role of O-acetylserine as a sulphur status independent regulator during plant growth. Plant Journal 70 (4), pp. 666 - 677 (2012)
91.
Journal Article
Huber, A.; Koch, J.; Kragler, F.; Brocard, C.; Hartig, A.: A Subtle Interplay Between Three Pex11 Proteins Shapes De Novo Formation and Fission of Peroxisomes. Traffic 13 (1), pp. 157 - 167 (2012)
92.
Journal Article
Hundertmark, M.; Popova, A. V.; Rausch, S.; Seckler, R.; Hincha, D. K.: Influence of drying on the secondary structure of intrinsically disordered and globular proteins. Biochemical and Biophysical Research Communications 417 (1), pp. 122 - 128 (2012)
93.
Journal Article
Johnson, M. T.; Carpenter, E. J.; Tian, Z.; Bruskiewich, R.; Burris, J. N.; Carrigan, C. T.; Chase, M. W.; Clarke, N. D.; Covshoff, S.; Depamphilis, C. W. et al.; Edger, P. P.; Goh, F.; Graham, S.; Greiner, S.; Hibberd, J. M.; Jordon-Thaden, I.; Kutchan, T. M.; Leebens-Mack, J.; Melkonian, M.; Miles, N.; Myburg, H.; Patterson, J.; Pires, J. C.; Ralph, P.; Rolf, M.; Sage, R. F.; Soltis, D.; Soltis, P.; Stevenson, D.; Stewart, C. N.,. J.; Surek, B.; Thomsen, C. J.; Villarreal, J. C.; Wu, X.; Zhang, Y.; Deyholos, M. K.; Wong, G. K.: Evaluating methods for isolating total RNA and predicting the success of sequencing phylogenetically diverse plant transcriptomes. PLoS One 7 (11), p. e50226 (2012)
94.
Journal Article
Karojet, S.; Kunz, S.; van Dongen, J. T.: Microbacterium yannicii sp. nov., isolated from Arabidopsis thaliana roots. International Journal of Systematic and Evolutionary Microbiology 62 (Pt 4), pp. 822 - 826 (2012)
95.
Journal Article
Keren, I.; Tal, L.; des Francs-Small, C. C.; Araujo, W. L.; Shevtsov, S.; Shaya, F.; Fernie, A. R.; Small, I.; Ostersetzer-Biran, O.: nMAT1, a nuclear-encoded maturase involved in the trans-splicing of nad1 intron 1, is essential for mitochondrial complex I assembly and function. The Plant Journal 71 (3), pp. 413 - 426 (2012)
96.
Journal Article
Kirma, M.; Araujo, W. L.; Fernie, A. R.; Galili, G.: The multifaceted role of aspartate-family amino acids in plant metabolism. Journal of Experimental Botany 63 (14), pp. 4995 - 5001 (2012)
97.
Journal Article
Kleessen, S.; Antonio, C.; Sulpice, R.; Laitinen, R.; Fernie, A. R.; Stitt, M.; Nikoloski, Z.: Structured patterns in geographic variability of metabolic phenotypes in Arabidopsis thaliana. Nature Communications 3, p. 1319 (2012)
98.
Journal Article
Kleessen, S.; Araujo, W. L.; Fernie, A. R.; Nikoloski, Z.: Model-based Confirmation of Alternative Substrates of Mitochondrial Electron Transport Chain. Journal of Biological Chemistry 287 (14), pp. 11122 - 11131 (2012)
99.
Journal Article
Kleessen, S.; Fernie, A. R.; Nikoloski, Z.: A computational framework for evaluating the efficiency of Arabidopsis accessions in response to nitrogen stress reveals important metabolic mechanisms. Frontiers in Plant Science 3, p. 217 (2012)
100.
Journal Article
Kleessen, S.; Nikoloski, Z.: Dynamic regulatory on/off minimization for biological systems under internal temporal perturbations. BMC Systems Biology 6 (1), p. 16 (2012)
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