Publications of the MPI

51.

Journal Article

Kopka, J.; Schauer, N.; Krueger, S.; Birkemeyer, C.; Usadel, B.; Bergmueller, E.; Doermann, P.; Weckwerth, W.; Gibon, Y.; Stitt, M. et al.; Willmitzer, L.; Fernie, A. R.; Steinhauser, D.: GMD@CSB.DB: the Golm Metabolome Database. Bioinformatics 21 (8), pp. 1635 - 1638 (2005)

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52.

Journal Article

Krusell, L.; Krause, K.; Ott, T.; Desbrosses, G.; Kraemer, U.; Sato, S.; Nakamura, Y.; Tabata, S.; James, E. K.; Sandal, N. et al.; Stougaard, J.; Kawaguchi, M.; Miyamoto, A.; Suganuma, N.; Udvardi, M. K.: The sulfate transporter SST1 is crucial for symbiotic nitrogen fixation in Lotus japonicus root nodules. Plant Cell 17 (5), pp. 1625 - 1636 (2005)

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53.

Journal Article

Laitinen, R. A.; Immanen, J.; Auvinen, P.; Rudd, S.; Alatalo, E.; Paulin, L.; Ainasoja, M.; Kotilainen, M.; Koskela, S.; Teeri, T. H. et al.; Elomaa, P.: Analysis of the floral transcriptome uncovers new regulators of organ determination and gene families related to flower organ differentiation in Gerbera hybrida (Asteraceae). Genome Research 15 (4), pp. 475 - 486 (2005)

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54.

Journal Article

Lanquar, V.; Lelievre, F.; Bolte, S.; Hames, C.; Alcon, C.; Neumann, D.; Vansuyt, G.; Curie, C.; Schroeder, A.; Kraemer, U. et al.; Barbier-Brygoo, H.; Thomine, S.: Mobilization of vacuolar iron by AtNRAMP3 and AtNRAMP4 is essential for seed germination on low iron. EMBO Journal 24 (23), pp. 4041 - 4051 (2005)

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55.

Journal Article

Lin, W. H.; Wang, Y.; Mueller-Roeber, B.; Brearley, C. A.; Xu, Z. H.; Xue, H.-W.: At5PTase13 modulates cotyledon vein development through regulating auxin homeostasis. Plant Physiology 139 (4), pp. 1677 - 1691 (2005)

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56.

Journal Article

Lisso, J.; Steinhauser, D.; Altmann, T.; Kopka, J.; Muessig, C.: Identification of brassinosteroid-related genes by means of transcript co-response analyses. Nucleic Acids Research 33 (8), pp. 2685 - 2696 (2005)

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57.

Journal Article

Liu, C. M.; Willmund, F.; Whitelegge, J. P.; Hawat, S.; Knapp, B.; Lodha, M.; Schroda, M.: J-domain protein CDJ2 and HSP70B are a plastidic chaperone pair that interacts with vesicle-inducing protein in plastids 1. Molecular Biology of the Cell 16 (3), pp. 1165 - 1177 (2005)

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58.

Journal Article

Lodha, M.; Schroda, M.: Analysis of chromatin structure in the control regions of the Chlamydomonas HSP70A and RBCS2 genes. Plant Molecular Biology 59 (3), pp. 501 - 513 (2005)

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59.

Journal Article

Lohse, S.; Schliemann, W.; Ammer, C.; Kopka, J.; Strack, D.; Fester, T.: Organization and metabolism of plastids and mitochondria in arbuscular mycorrhizal roots of Medicago truncatula. Plant Physiology 139 (1), pp. 329 - 340 (2005)

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60.

Journal Article

Lorenc-Kukula, K.; Amarowicz, R.; Oszmianski, J.; Doermann, P.; Starzycki, M.; Skala, J.; Zuk, M.; Kulma, A.; Szopa, J.: Pleiotropic effect of phenolic compounds content increases in transgenic flax plant. Journal of Agricultural and Food Chemistry 53 (9), pp. 3685 - 3692 (2005)

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61.

Journal Article

Lossl, A.; Bohmert, K.; Harloff, H.; Eibl, C.; Muhlbauer, S.; Koop, H. U.: Inducible trans-activation of plastid transgenes: Expression of the R. eutropha phb operon in transplastomic tobacco. Plant and Cell Physiology 46 (9), pp. 1462 - 1471 (2005)

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62.

Journal Article

Lytovchenko, A.; Hajirezaei, M.-R.; Eickmeier, I.; Mittendorf, V.; Sonnewald, U.; Willmitzer, L.; Fernie, A. R.: Expression of an Escherichia coli phosphoglucomutase in potato (Solanum tuberosum L.) results in minor changes in tuber metabolism and a considerable delay in tuber sprouting. Planta 221 (6), pp. 915 - 927 (2005)

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63.

Journal Article

Lytovchenko, A.; Schauer, N.; Willmitzer, L.; Fernie, A. R.: Tuber-specific cytosolic expression of a bacterial phosphoglucomutase in potato (Solanum tuberosum L.) dramatically alters carbon partitioning. Plant and Cell Physiology 46 (4), pp. 588 - 597 (2005)

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64.

Journal Article

McGrath, K. C.; Dombrecht, B.; Manners, J. M.; Schenk, P. M.; Edgar, C. I.; Maclean, D. J.; Scheible, W.-R.; Udvardi, M. K.; Kazan, K.: Repressor- and activator-type ethylene response factors functioning in jasmonate signaling and disease resistance identified via a genome-wide screen of Arabidopsis transcription factor gene expression. Plant Physiology 139 (2), pp. 949 - 959 (2005)

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65.

Journal Article

Michard, E.; Lacombe, B.; Poree, F.; Mueller-Roeber, B.; Sentenac, H.; Thibaud, J. B.; Dreyer, I.: A unique voltage sensor sensitizes the potassium channel AKT2 to phosphoregulation. Journal of General Physiology 126 (6), pp. 605 - 617 (2005)

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66.

Journal Article

Morgenthal, K.; Wienkoop, S.; Scholz, M.; Selbig, J.; Weckwerth, W.: Correlative GC-TOF-MS-based metabolite profiling and LC-MS-based protein profiling reveal time-related systemic regulation of metabolite-protein networks and improve pattern recognition for multiple biomarker selection. Metabolomics 1 (2), pp. 109 - 121 (2005)

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67.

Journal Article

Mueller-Roeber, B.; Riano-Pachon, D.M.; Ruzicic, S.; Skirycz, A.; Caldana, C.; Witt, I.; Zanor, M.-I.: Pflanzliche Regulatorproteine. Bioforum 6, pp. 32 - 34 (2005)

MPG.PuRe

68.

Journal Article

Nikiforova, V. J.; Daub, C. O.; Hesse, H.; Willmitzer, L.; Hoefgen, R.: Integrative gene-metabolite network with implemented causality deciphers informational fluxes of sulphur stress response. Journal of Experimental Botany 56 (417), pp. 1887 - 1896 (2005)

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69.

Journal Article

Nikiforova, V. J.; Kopka, J.; Tolstikov, V.; Fiehn, O.; Hopkins, L.; Hawkesford, M. J.; Hesse, H.; Hoefgen, R.: Systems rebalancing of metabolism in response to sulfur deprivation, as revealed by metabolome analysis of arabidopsis plants. Plant Physiology 138 (1), pp. 304 - 318 (2005)

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70.

Journal Article

Nunes-Nesi, A.; Carrari, F.; Lytovchenko, A.; Smith, A. M. O.; Loureiro, M. E.; Ratcliffe, R. G.; Sweetlove, L. J.; Fernie, A. R.: Enhanced photosynthetic performance and growth as a consequence of decreasing mitochondrial malate dehydrogenase activity in transgenic tomato plants. Plant Physiology 137 (2), pp. 611 - 622 (2005)

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71.

Journal Article

Oliver, S. N.; van Dongen, J. T.; Alfred, S. C.; Mamun, E. A.; Zhao, X. C.; Saini, H. S.; Fernandes, S. F.; Blanchard, C. L.; Sutton, B. G.; Geigenberger, P. et al.; Dennis, E. S.; Dolferus, R.: Cold-induced repression of the rice anther-specific cell wall invertase gene OSINV4 is correlated with sucrose accumulation and pollen sterility. Plant Cell and Environment 28 (12), pp. 1534 - 1551 (2005)

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72.

Journal Article

Ott, T.; van Dongen, J. T.; Gunther, C.; Krusell, L.; Desbrosses, G.; Vigeolas, H.; Bock, V.; Czechowski, T.; Geigenberger, P.; Udvardi, M. K.: Symbolic leghemoglobins are crucial for nitrogen fixation in legume root nodules but not for general plant growth and development. Current Biology 15 (6), pp. 531 - 535 (2005)

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73.

Journal Article

Persson, S.; Rosenquist, M.; Knoblach, B.; Khosravi-Far, R.; Sommarin, M.; Michalak, M.: Diversity of the protein disulfide isomerase family: Identification of breast tumor induced Hag2 and Hag3 as novel members of the protein family. Molecular Phylogenetics and Evolution 36 (3), pp. 734 - 740 (2005)

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74.

Journal Article

Persson, S.; Wei, H. R.; Milne, J.; Page, G. P.; Somerville, C. R.: Identification of genes required for cellulose synthesis by regression analysis of public microarray data sets. Proceedings of the National Academy of Sciences of the United States of America 102 (24), pp. 8633 - 8638 (2005)

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75.

Journal Article

Pinheiro, C.; Kehr, J.; Ricardo, C. P.: Effect of water stress on lupin stem protein analysed by two-dimensional gel electrophoresis. Planta 221 (5), pp. 716 - 728 (2005)

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76.

Journal Article

Popova, A. V.; Hincha, D. K.: Effects of the sugar headgroup of a glycoglycerolipid on the phase behavloir of phospholipid model membranes in the dry state. Glycobiology 15 (11), pp. 1150 - 1155 (2005)

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77.

Journal Article

Rautengarten, C.; Steinhauser, D.; Buessis, D.; Stintzi, A.; Schaller, A.; Kopka, J.; Altmann, T.: Inferring Hypotheses on Functional Relationships of Genes: Analysis of the Arabidopsis thaliana Subtilase Gene Family. PLoS Computational Biology 1 (4), p. e40 (2005)

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78.

Journal Article

Repsilber, D.; Fink, L.; Jacobsen, M.; Blasing, O.; Ziegler, A.: Sample selection for microarray gene expression studies. Methods of Information in Medicine 44 (3), pp. 461 - 467 (2005)

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79.

Journal Article

Riano-Pachon, D. M.; Dreyer, I.; Mueller-Roeber, B.: Orphan transcripts in Arabidopsis thaliana: identification of several hundred previously unrecognized genes. Plant Journal 43 (2), pp. 205 - 212 (2005)

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80.

Journal Article

Riemenschneider, A.; Nikiforova, V.; Hoefgen, R.; De Kok, L. J.; Papenbrock, J.: Impact of elevated H2S on metabolite levels, activity of enzymes and expression of genes involved in cysteine metabolism. Plant Physiology and Biochemistry 43 (5), pp. 473 - 483 (2005)

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81.

Journal Article

Riemenschneider, A.; Riedel, K.; Hoefgen, R.; Papenbrock, J.; Hesse, H.: Impact of reduced O-acetylserine(thiol)lyase isoform contents on potato plant metabolism. Plant Physiology 137 (3), pp. 892 - 900 (2005)

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82.

Journal Article

Schad, M.; Lipton, M. S.; Giavalisco, P.; Smith, R. D.; Kehr, J.: Evaluation of two-dimensional electrophoresis and liquid chromatography tandem mass spectrometry for tissue-specific protein profiling of laser-microdissected plant samples. Electrophoresis 26 (14), pp. 2729 - 2738 (2005)

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83.

Journal Article

Schad, M.; Mungur, R.; Fiehn, O.; Kehr, J.: Metabolic profiling of laser microdissected vascular bundles of Arabidopsis thaliana. Plant Methods 1 (1), p. 2 (2005)

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84.

Journal Article

Schauer, N.; Fernie, A. R.: Intraspezifische Introgression - wie die Genetik biochemische Phänotype beeinflusst. GenomXpress 1, pp. 14 - 16 (2005)

MPG.PuRe

85.

Journal Article

Schauer, N.; Steinhauser, D.; Strelkov, S.; Schomburg, D.; Allison, G.; Moritz, T.; Lundgren, K.; Roessner-Tunali, U.; Forbes, M. G.; Willmitzer, L. et al.; Fernie, A. R.; Kopka, J.: GC-MS libraries for the rapid identification of metabolites in complex biological samples. FEBS Letters 579 (6), pp. 1332 - 1337 (2005)

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86.

Journal Article

Schauer, N.; Zamir, D.; Fernie, A. R.: Metabolic profiling of leaves and fruit of wild species tomato: a survey of the Solanum lycopersicum complex. Journal of Experimental Botany 56 (410), pp. 297 - 307 (2005)

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87.

Journal Article

Schmaelzlin, E.; van Dongen, J. T.; Klimant, I.; Marmodee, B.; Steup, M.; Fisahn, J.; Geigenberger, P.; Lohmannsroeben, H. G.: An optical multifrequency phase-modulation method using microbeads for measuring intracellular oxygen concentrations in plants. Biophysical Journal 89 (2), pp. 1339 - 1345 (2005)

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88.

Journal Article

Scholz, M.; Kaplan, F.; Guy, C. L.; Kopka, J.; Selbig, J.: Non-linear PCA: a missing data approach. Bioinformatics 21 (20), pp. 3887 - 3895 (2005)

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89.

Journal Article

Schroeder, M.; Giermann, N.; Zrenner, R.: Functional analysis of the pyrimidine de novo synthesis pathway in solanaceous species. Plant Physiology 138 (4), pp. 1926 - 1938 (2005)

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90.

Journal Article

Schulze, W. X.: Protein analysis in dissolved organic matter: What proteins from organic debris, soil leachate and surface water can tell us - a perspective. Biogeosciences 2 (1), pp. 75 - 86 (2005)

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91.

Journal Article

Schulze, W. X.; Deng, L.; Mann, M.: Phosphotyrosine interactome of the ErbB-receptor kinase family. Molecular Systems Biology 1, pp. 2005 - 2008 (2005)

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92.

Journal Article

Schulze, W. X.; Gleixner, G.; Kaiser, K.; Guggenberger, G.; Mann, M.; Schulze, E.-D.: A proteomic fingerprint of dissolved organic carbon and of soil particles. Oecologia 142 (3), pp. 335 - 343 (2005)

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93.

Journal Article

Sharma, R. K.; Bock, R.; Bansal, K. C. (.c.: Plastid transformation: Safer alternative to transgenic plants. Physiology and Molecular Biology of Plants 11 (2), pp. 179 - 185 (2005)

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94.

Journal Article

Skirycz, A.; Widrych, A.; Szopa, J.: Expression of human dopamine receptor in potato (Solanum tuberosum) results in altered tuber carbon metabolism. BMC Plant Biology 5, 1 (2005)

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95.

Journal Article

Steffen, R.; Kelly, A. A.; Huyer, J.; Doermann, P.; Renger, G.: Investigations on the reaction pattern of photosystem II in leaves from Arabidopsis thaliana wild type plants and mutants with genetically modified lipid content. Biochemistry 44 (9), pp. 3134 - 3142 (2005)

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96.

Journal Article

Studart-Guimaraes, C.; Gibon, Y.; Frankel, N.; Wood, C. C.; Zanor, M. I.; Fernie, A. R.; Carrari, F.: Identification and characterisation of the alpha and beta subunits of succinyl CoA ligase of tomato. Plant Molecular Biology 59 (5), pp. 781 - 791 (2005)

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97.

Journal Article

Thieme, F.; Koebnik, R.; Bekel, T.; Berger, C.; Boch, J.; Buttner, D.; Caldana, C.; Gaigalat, L.; Goesmann, A.; Kay, S. et al.; Kirchner, O.; Lanz, C.; Linke, B.; McHardy, A.; Meyer, F.; Mittenhuber, G.; Nies, D.; Niesbach-Klosgen, U.; Patschkowski, T.; Ruckert, C.; Rupp, O.; Schneiker, S.; Schuster, S.; Vorholter, F.; Weber, E.; Puhler, A.; Bonas, U.; Bartels, D.; Kaiser, O.: Insights into genome plasticity and pathogenicity of the plant pathogenic bacterium Xanthomonas campestris pv. vesicatoria revealed by the complete genome sequence. Journal of Bacteriology 187 (21), pp. 7254 - 7266 (2005)

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98.

Journal Article

Urbanczyk-Wochniak, E.; Baxter, C.; Kolbe, A.; Kopka, J.; Sweetlove, L. J.; Fernie, A. R.: Profiling of diurnal patterns of metabolite and transcript abundance in potato (Solanum tuberosum) leaves. Planta 221 (6), pp. 891 - 903 (2005)

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99.

Journal Article

Urbanczyk-Wochniak, E.; Fernie, A. R.: Metabolic profiling reveals altered nitrogen nutrient regimes have diverse effects on the metabolism of hydroponically-grown tomato (Solanum lycopersicum) plants. Journal of Experimental Botany 56 (410), pp. 309 - 321 (2005)

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100.

Journal Article

Usadel, B.; Kuschinsky, A. M.; Steinhauser, D.; Pauly, M.: Transcriptional co-response analysis as a tool to identify new components of the wall biosynthetic machinery. Plant Biosystems 139 (1), pp. 69 - 73 (2005)

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Journal Article (110)