Publications of A. Graf

Dziubek, D., Poeker, L., Siemiatkowska, B., Graf, A., Marino, G., Alseekh, S., Arrivault, S., Fernie, A. R., Armbruster, U. & Geigenberger, P. NTRC and thioredoxins m1/m2 underpin the light acclimation of plants on proteome and metabolome levels. Plant Physiology 194, 982–1005 (2024).

Zhang, Y. J., Martinez-Jaime, S., Bulut, M., Graf, A. & Fernie, A. R. The conditional mitochondrial protein complexome in Arabidopsis thaliana root and shoot. Plant Communications 4, (2023).

Skeffington, A. W., Fischer, A., Sviben, S., Brzezinka , M., Gorka, M., Bertinetti, L., Woehle, C., Huettel, B., Graf, A. & Scheffel, A. A joint proteomic and genomic investigation provides insights into the mechanism of calcification in coccolithophores. Nature Communications 14, (2023).

David, Z., Swart, C., Graf, A., Arrivault, S., Tillich, M., Proost, S., Nikoloski, Z., Stitt, M., Bock, R., Mühlhaus, M. & Boulouis, A. Topology of the redox network during induction of photosynthesis as revealed by time-resolved proteomics in tobacco. Science Advances 7, (2021).

Aarabi, F., Rakpenthai, A., Barahimipour, R., Gorka, M., Alseekh, S., Zhang, Y. J., Salem, M. A., Brückner, F., Omranian, N., Watanabe, M., Nikoloski, Z., Giavalisco, P., Tohge, T., Graf, A., Fernie, A. R. & Hoefgen, R. Sulfur Deficiency Induced genes affect seed protein accumulation and composition under sulfate deprivation. Plant Physiology 187, 2419–2434 (2021).

Friedrich, T., Oberkofler, V., Trindade, I., Altmann, S., Brzezinka, K., Lämke, J., Gorka, M., Kappel, C., Sokolowska, E., Skirycz, A., Graf, A. & Bäurle, I. Heteromeric HSFA2/HSFA3 complexes drive transcriptional memory after heat stress in Arabidopsis. Nature Communications 12, (2021).

Firmino, A. A. P., Gorka, M., Graf, A., Skirycz, A., Martinez-Seidel, F., Zander, K., Kopka, J. & Beine-Golovchuk, O. Separation and paired proteome profiling of plant chloroplast and cytoplasmic ribosomes. Plants 9, (2020).

Urrea Castellanos, R., Friedrich, T., Petrovic, N., Altmann, S., Brzezinka, K., Gorka, M., Graf, A. & Bäurle, I. FORGETTER2 protein phosphatase and phospholipase D modulate heat stress memory in Arabidopsis. The Plant Journal 104, 7–17 (2020).

Zhang, Y. J., Sampathkumar, A., Kerbler, S. M.-L., Swart, C., Hille, C., Seerangan, K., Graf, A., Sweetlove, L. & Fernie, A. R. A moonlighting role for enzymes of glycolysis in the co-localization of mitochondria and chloroplasts. Nature Communications 11, (2020).

Gorka, M., Swart, C., Siemiatkowska, B., Martínez-Jaime, S., Skirycz, A., Streb, S. & Graf, A. Protein Complex Identification and quantitative complexome by CN-PAGE. Scientific Reports 9, (2019).

Takahashi, D., Gorka, M., Erban, A., Graf, A., Kopka, J., Zuther, E. & Hincha, D. K. Both cold and sub-zero acclimation induce cell wall modification and changes in the extracellular proteome in Arabidopsis thaliana. Scientific Reports 9, (2019).

Janowski, M., Zoschke, R., Scharff, L. B., Martinez-Jaime, S., Ferrari, C., Proost, S., Ng Wei Xiong, J., Omranian, N., Musialak-Lange, M., Nikoloski, Z., Graf, A., Schöttler, M. A., Sampathkumar, A., Vaid, N. & Mutwil, M. AtRsgA from Arabidopsis thaliana is important for maturation of the small subunit of the chloroplast ribosome. The Plant Journal 96, 404–420 (2018).

Kosmacz, M., Luzarowski, M., Kerber, O., Leniak, E., Gutierrez-Beltran, E., Moreno, J. C., Gorka, M., Szlachetko, J., Veyel, D., Graf, A. & Skirycz, A. Interaction of 2 ',3 '-cAMP with Rbp47b Plays a Role in Stress Granule Formation. Plant Physiology 177, 411–421 (2018).

Moreno, J. C., Martinez-Jaime, S., Schwartzmann, J., Karcher, D., Tillich, M., Graf, A. & Bock, R. Temporal Proteomics of Inducible RNAi Lines of Clp Protease Subunits Identifies Putative Protease Substrates. Plant Physiology 176, 1485–1508 (2018).

Swart, C., Martínez-Jaime, S., Gorka, M., Zander, K. & Graf, A. Hit-Gel: Streamlining in-gel protein digestion for high-throughput proteomics experiments. Scientific Reports 8, (2018).

Veyel, D., Sokolowska, E., Moreno, J. C., Kierszniowska, S., Cichon, J., Wojciechowska, I., Luzarowski, M., Kosmacz, M., Szlachetko, J., Gorka, M., Meret, M., Graf, A., Meyer, E. H., Willmitzer, L. & Skirycz, A. PROMIS, global analysis of PROtein-metabolite interactions using size separation in Arabidopsis thaliana. The Journal of Biological Chemistry 293, 12440–12453 (2018).

Yan, W., Chen, D., Smaczniak, C., Engelhorn, J., Liu, H., Yang, W., Graf, A., Carles, C. C., Zhou, D.-X. & Kaufmann, K. Dynamic and spatial restriction of Polycomb activity by plant histone demethylases. Nature Plants 4, 681–689 (2018).

Zhang, Y. J., Swart, C., Alseekh, S., Scossa, F., Jiang, L., Obata, T., Graf, A. & Fernie, A. R. The Extra-Pathway Interactome of the TCA Cycle: Expected and Unexpected Metabolic Interactions. Plant Physiology 177, 966–979 (2018).

Sklodowski, K., Riedelsberger, J., Raddatz, N., Riadi, G., Caballero, J., Chérel, I., Schulze, W. X., Graf, A. & Dreyer, I. The receptor-like pseudokinase MRH1 interacts with the voltage-gated potassium channel AKT2. Scientific Reports 7, (2017).

Graf, A., Coman, D., Uhrig, R. G., Walsh, S., Flis, A., Stitt, M. & Gruissem, W. Parallel analysis of arabidopsis circadian clock mutants reveals different scales of transcriptome and proteome regulation. Open Biology 7, (2017).