Publications of F. Martinez-Seidel

Martinez-Seidel, F., Suwanchaikasem, P., Gentry-Torfer, D., Rajarathinam, Y., Ebert, A., Erban, A., Firmino, A. A. P., Nie, S., Leeming, M., Williamson, N., Roessner, U., Kopka, J. & Boughton, B. A. Remodelled ribosomal populations synthesize a specific proteome in proliferating plant tissue during cold. Philosophical Transactions of the Royal Society of London, Series B: Biological Sciences 380, (2025).

Murillo, E., Martinez-Seidel, F., Atanasov, K. E., Gentry-Torfer, D., Firmino, A. A. P., Augusto, A., Erban, A., Nie, S., Leeming, M. G., Suwanchaikasem, P., Boughton, B. A., Williamson, N. A., Roessner, U., Kopka, J. & Alcázar , R. Polyamines and flg22 reshape the ribosomal protein composition of actively translating ribosomes in plants. Plant Physiology and Biochemistry 220, (2025).

Ting, M. K. Y., Gao, Y., Barahimipour, R., Ghandour, R., Liu, J., Martinez-Seidel, F., Smirnova, J., Gotsmann, V. L., Fischer, A., Haydon, M. J., Willmund, F. & Zoschke, R. Optimization of ribosome profiling in plants including structural analysis of rRNA fragments. Plant Methods 20, (2024).

Gentry-Torfer, D., Murillo, E., Barrington, C. L., Nie, S., Leeming, M. G., Suwanchaikasem, P., Williamson, N. A., Roessner, U., Boughton, B. A., Kopka, J. & Martinez-Seidel, F. Streamlining Protein Fractional Synthesis Rates Using SP3 Beads and Stable Isotope Mass Spectrometry: A Case Study on the Plant Ribosome. Bio-protocol 14, (2024).

Rosa-Téllez, S., Alcántara-Enguídanos, A., Martinez-Seidel, F., Casatejada-Anchel, R., Saeheng, S., Bailes, C. L., Erban, A., Medeiros, D. B., Alepúz, P., Matus, J. T., Kopka, J., Muñoz-Bertomeu, J., Krueger, S., Roje, S., Fernie, A. R. & Ros, R. The serine-glycine-one carbon metabolic network orchestrates changes in nitrogen and sulfur metabolism and shapes plant development. The Plant Cell 36, 404–426 (2024).

Siodmak, A., Martinez-Seidel, F., Rayapuram, N., Bazin, J., Alhoraibi, H., Gentry-Torfer, D., Tabassum, N., Sheikh, A. H., Kise, J. K. G., Blilou, I., Crespi, M., Kopka, J. & Hirt, H. Dynamics of ribosome composition and ribosomal protein phosphorylation in immune signaling in Arabidopsis thaliana. Nucleic Acids Research 51, 11876–11892 (2023).

Figueroa, N. E., Franz, P., Luzarowski, M., Martinez-Seidel, F., Moreno, J. C., Childs, D., Ziemblicka, A., Sampathkumar, A., Andersen, T. G., Tsiavaliaris, G., Kosmacz, M. & Skirycz, A. Protein interactome of 3’,5’-cyclic adenosine monophosphate reveals its role in regulating the actin cytoskeleton. The Plant Journal 115, 1214–1230 (2023).

Awada, R., Lepelley, M., Breton, D., Charpagne, A., Campa, C., Berry, V., Georget, F., Breitler, J.-C., Léran, S., Djerrab, D., Martinez-Seidel, F., Descombes, P., Crouzillat, D., Bertrand, B. & Etienne, H. Global transcriptome profiling reveals differential regulatory, metabolic and hormonal networks during somatic embryogenesis in Coffea arabica. BMC Genomics 24, (2023).

Brigante, F. I., Lucini Mas, A., Erban, A., Fehrle, I., Martinez-Seidel, F., Kopka, J., Wunderlin, D. A. & Baroni, M. V. Authenticity assessment of commercial bakery products with chia, flax and sesame seeds: Application of targeted and untargeted metabolomics results from seeds and lab-scale cookies. Food control 140, (2022).

Cheong, B. E., Yu, D., Martinez-Seidel, F., Ho, W. W. H., Rupasinghe, T. W. T., Dolferus, R. & Roessner, U. The Effect of Cold Stress on the Root-Specific Lipidome of Two Wheat Varieties with Contrasting Cold Tolerance. Plants 11, (2022).

Martinez-Seidel, F., Hsieh, Y.-C., Walther, D., Kopka, J. & Firmino, A. A. P. COSNet(i): ComplexOme-Structural Network Interpreter used to study spatial enrichment in metazoan ribosomes. BMC Bioinformatics 22, (2021).

Cheong, B. E., Beine-Golovchuk, O., Gorka, M., Ho, W. W. H., Martinez-Seidel, F., Firmino, A. A. P., Skirycz, A., Roessner, U. & Kopka, J. Arabidopsis REI-LIKE proteins activate ribosome biogenesis during cold acclimation. Scientific Reports 11, (2021).

Londoño-Giraldo, L. M., Baena-Pedroza, A. M., Martinez-Seidel, F., Corpas-Iguar, E. & Taborda-Ocampo, G. Gone wild: Integration of antioxidative, physicochemical, volatilomic and sensorial profiles ratify rustic relatives of cherry tomato as ideal mating partners. Scientia Horticulturae 277, (2021).

Martinez-Seidel, F., Beine-Golovchuk, O., Hsieh, Y.-C., El Eshraky, K., Gorka, M., Cheong, B.-E., Jimenez‐posada, E. V., Walther, D., Skirycz, A., Roessner, U., Kopka, J. & Firmino, A. A. P. Spatially enriched paralog rearrangements argue functionally diverse ribosomes arise during cold acclimation in arabidopsis. International Journal of Molecular Sciences 22, (2021).

Martinez-Seidel, F., Suwanchaikasem, P., Nie, S., Leeming, M. G., Firmino, A. A. P., Williamson, N. A., Kopka, J., Roessner, U. & Boughton, B. A. Membrane-Enriched Proteomics Link Ribosome Accumulation and Proteome Reprogramming With Cold Acclimation in Barley Root Meristems. Frontiers in Plant Science 12, (2021).

Melo, T. O., Franciscon, L., Brown, G., Kopka, J., Cunha, L., Martinez-Seidel, F., Madureira, L. A. D. S. & Hansel, F. A. Univariate statistical analysis of gas chromatography – mass spectrometry fingerprints analyses. Chemical Data Collections 33, (2021).

Schillaci, M., Kehelpannala, C., Martinez-Seidel, F., Smith, P. M. C., Arsova, B., Watt, M. & Roessner, U. The Metabolic Response of Brachypodium Roots to the Interaction with Beneficial Bacteria Is Affected by the Plant Nutritional Status. Metabolites 11, (2021).

Firmino, A. A. P., Gorka, M., Graf, A., Skirycz, A., Martinez-Seidel, F., Zander, K., Kopka, J. & Beine-Golovchuk, O. Separation and paired proteome profiling of plant chloroplast and cytoplasmic ribosomes. Plants 9, (2020).

Martinez-Seidel, F., Beine-Golovchuk, O., Hsieh, Y.-C. & Kopka, J. Systematic review of plant ribosome heterogeneity and specialization. Frontiers in Plant Science 11, (2020).

Awada, R., Campa, C., Gibault, E., Dechamp, E., Georget, F., Lepelley, M., Abdallah, C., Erban, A., Martinez-Seidel, F., Kopka, J., Legendre, L., Leran, S., Conejero, G., Verdeil, J.-L., Crouzillat, D., Breton, D., Bertrand, B. & Etienne, H. Unravelling the Metabolic and Hormonal Machinery During Key Steps of Somatic Embryogenesis: A Case Study in Coffee. International Journal of Molecular Sciences 20, (2019).