Publications of C. Ferrari

Lázaro-Gimeno, D., Ferrari, C., Delhomme, N., Johansson, M., Sjölander, J., Singh, R. K., Mutwil, M. & Eriksson, M. E. The circadian clock participates in seasonal growth in Norway spruce (Picea abies). Tree Physiology 44, (2024).

Julca, I., Ferrari, C., Flores-Tornero, M., Proost, S., Lindner, A.-C., Hackenberg, D., Steinbachová, L., Michaelidis, C., Gomes Pereira, S., Misra, C. S., Kawashima, T., Borg, M., Berger, F., Goldberg, J., Johnson, M., Honys, D., Twell, D., Sprunck, S., Dresselhaus, T., Becker, J. D. & Mutwil, M. Comparative transcriptomic analysis reveals conserved programmes underpinning organogenesis and reproduction in land plants. Nature Plants 7, 1143–1159 (2021).

Ferrari, C. & Mutwil, M. Gene expression analysis of Cyanophora paradoxa reveals conserved abiotic stress responses between basal algae and flowering plants. New Phytologist 225, 1562–1577 (2020).

Ferrari, C., Shivhare, D., Hansen, B. O., Pasha, A., Esteban, E., Provart, N. J., Kragler, F., Fernie, A. R., Tohge, T. & Mutwil, M. Expression Atlas of Selaginella moellendorffii Provides Insights into the Evolution of Vasculature, Secondary Metabolism, and Roots. The Plant Cell 32, 853–870 (2020).

Ng, J. W. X., Tan, Q. W., Ferrari, C. & Mutwil, M. Diurnal.plant.tools: Comparative Transcriptomic and Co-expression Analyses of Diurnal Gene Expression of the Archaeplastida Kingdom. Plant and Cell Physiology 61, 212–220 (2020).

Ferrari, C., Proost, S., Janowski, M., Becker, J., Nikoloski, Z., Bhattacharya, D., Price, D., Tohge, T., Bar-Even, A., Fernie, A. R., Stitt, M. & Mutwil, M. Kingdom-wide comparison reveals the evolution of diurnal gene expression in Archaeplastida. Nature Communications 10, (2019).

Price, D. C., Goodenough, U. W., Roth, R., Lee, J.-H., Kariyawasam, T., Mutwil, M., Ferrari, C., Facchinelli, F., Ball, S. G., Cenci, U., Chan, C. X., Wagner, N. E., Yoon, H. S., Weber, A. P. M. & Bhattacharya, D. Analysis of an improved Cyanophora paradoxa genome assembly. DNA research: an international journal for rapid publication of reports on genes and genomes 26, 287–299 (2019).

Janowski, M., Zoschke, R., Scharff, L. B., Martinez-Jaime, S., Ferrari, C., Proost, S., Ng Wei Xiong, J., Omranian, N., Musialak-Lange, M., Nikoloski, Z., Graf, A., Schöttler, M. A., Sampathkumar, A., Vaid, N. & Mutwil, M. AtRsgA from Arabidopsis thaliana is important for maturation of the small subunit of the chloroplast ribosome. The Plant Journal 96, 404–420 (2018).

Ferrari, C., Proost, S., Ruprecht, C. & Mutwil, M. PhytoNet: comparative co-expression network analyses across phytoplankton and land plants. Nucleic Acids Research 46, W76–W83 (2018).

Hansen, B. O., Meyer, E. H., Ferrari, C., Vaid, N., Movahedi, S., Vandepoele, K., Nikoloski, Z. & Mutwil, M. Ensemble gene function prediction database reveals genes important for complex I formation in Arabidopsis thaliana. New Phytologist 217, 1521–1534 (2018).