Publications of S. Alseekh

Journal Article (104)

1.
Journal Article
Aarabi, F., Rakpenthai, A., Barahimipour, R., Gorka, M., Alseekh, S., Zhang, Y. J., Salem, M. A., Brückner, F., Omranian, N., Watanabe, M., Nikoloski, Z., Giavalisco, P., Tohge, T., Graf, A., Fernie, A. R. & Hoefgen, R. Sulfur Deficiency Induced genes affect seed protein accumulation and composition under sulfate deprivation. Plant Physiology (2021). doi:10.1093/plphys/kiab386
2.
Journal Article
Bellucci, E., Aguilar, O. M., Alseekh, S., Bett, K., Brezeanu, C., Cook, D., De la Rosa, L., Delledonne, M., Dostatny, D. F., Ferreira, J. J., Geffroy, V., Ghitarrini, S., Kroc, M., Kumar Agrawal, S., Logozzo, G., Marino, M., Mary-Huard, T., McClean, P., Meglič, V., Messer, T., Muel, F., Nanni, L., Neumann, K., Servalli, F., Străjeru, S., Varshney, R. K., Vasconcelos, M. W., Zaccardelli, M., Zavarzin, A., Bitocchi, E., Frontoni, E., Fernie, A. R., Gioia, T., Graner, A., Guasch, L., Prochnow, L., Opperman, M., Susek, K., Tenaillon, M. & Papa, R. The INCREASE project: Intelligent Collections of Food-Legume Genetic Resources for European Agrofood Systems. The Plant Journal (2021). doi:10.1111/tpj.15472
3.
Journal Article
Alseekh, S., Aharoni, A., Brotman, Y., Contrepois, K., D’Auria, J., Ewald, J., C. Ewald, J., Fraser, P. D., Giavalisco, P., Hall, R. D., Heinemann, M., Link, H., Luo, J., Neumann, S., Nielsen, J., de Souza, L. P., Saito, K., Sauer, U., Schroeder, F. C., Schuster, S., Siuzdak, G., Skirycz, A., Sumner, L. W., Snyder, M. P., Tang, H., Tohge, T., Wang, Y., Wen, W., Wu, S., Xu, G., Zamboni, N. & Fernie, A. R. Mass spectrometry-based metabolomics: a guide for annotation, quantification and best reporting practices. Nature Methods 18, 747–756 (2021).
4.
Journal Article
Guadalupe Dominguez, P., Conti, G., Duffy, T., Insani, M., Alseekh, S., Asurmendi, S., Fernie, A. R. & Carrari, F. Multi-omics analyses reveal the roles of the ASR1 transcription factor in tomato fruits. Journal of Experimental Botany (2021). doi:10.1093/jxb/erab269
5.
Journal Article
Moreno, J. C., Rojas, B. E., Vicente, R., Gorka, M., Matz, T., Kosmacz, M., Peralta-Ariza, J. S., Zhang, Y. J., Alseekh, S., Childs, D., Luzarowski, M., Nikoloski, Z., Zarivach, R., Walther, D., Hartman, M. D., Figueroa, C. M., Iglesias, A. A., Fernie, A. R. & Skirycz, A. Tyr-Asp inhibition of glyceraldehyde 3-phosphate dehydrogenase affects plant redox metabolism. EMBO Journal (2021). doi:10.15252/embj.2020106800
6.
Journal Article
Zimmermann, S. E., Benstein, R. M., Flores-Tornero, M., Blau, S., Anoman, A. D., Rosa-Téllez, S., Gerlich, S. C., Salem, M. A., Alseekh, S., Kopriva, S., Wewer, V., Flügge, U.-I., Jacoby, R. P., Fernie, A. R., Giavalisco, P., Ros, R. & Krueger, S. The phosphorylated pathway of serine biosynthesis links plant growth with nitrogen metabolism. Plant Physiology 186, 1487–1506 (2021).
7.
Journal Article
de Souza, L. P., Alseekh, S., Scossa, F. & Fernie, A. R. Ultra-high-performance liquid chromatography high-resolution mass spectrometry variants for metabolomics research. Nature Methods 18, 733–746 (2021).
8.
Journal Article
Cortinovis, G., Oppermann, M., Neumann, K., Graner, A., Gioia, T., Marsella, M., Alseekh, S., Fernie, A. R., Papa, R., Bellucci, E. & Bitocchi, E. Towards the Development, Maintenance, and Standardized Phenotypic Characterization of Single-Seed-Descent Genetic Resources for Common Bean. Current Protocols in Plant Biology 1, (2021).
9.
Journal Article
Alseekh, S., Kostova, D., Bulut, M. & Fernie, A. R. Genome-wide association studies: assessing trait characteristics in model and crop plants. Cellular and Molecular Life Sciences 78, 5743–5754 (2021).
10.
Journal Article
Breitel, D., Brett, P., Alseekh, S., Fernie, A. R., Butelli, E. & Martin, C. Diverting tyrosine: Data from untargeted metabolic analysis of tomato fruit accumulating L-DOPA. Data in Brief 34, (2021).
11.
Journal Article
Brotman, Y., Llorente-Wiegand, C., Oyong, G., Badoni, S., Misra, G., Anacleto, R., Parween, S., Pasion, E., Tiozon Jr., R. N., Anonuevo, J. J., Krishna deGuzman, M., Alseekh, S., Mbanjo, E. G. N., Boyd, L. A., Fernie, A. R. & Sreenivasulu, N. The genetics underlying metabolic signatures in a brown rice diversity panel and their vital role in human nutrition. The Plant Journal 106, 507–527 (2021).
12.
Journal Article
Bulut, M., Fernie, A. R. & Alseekh, S. Large-scale Multi-omics Genome-wide Association Studies (Mo-GWAS): Guidelines for Sample Preparation and Normalization. Journal of Visualized Experiments 173, (2021).
13.
Journal Article
Duarte, G. T., Pandey, P. K., Vaid, N., Alseekh, S., Fernie, A. R., Nikoloski, Z. & Laitinen, R. Plasticity of rosette size in response to nitrogen availability is controlled by an RCC1-family protein. Plant, Cell and Environment (2021). doi:10.1111/pce.14146
14.
Journal Article
Fernie, A. R., Alseekh, S., Liu, J. & Yan, J. Using Precision Phenotyping to Inform de novo Domestication. Plant Physiology 186, 1397–1411 (2021).
15.
Journal Article
Jiang, L., Yoshida, T., Stiegert, S., Yu, J., Alseekh, S., Lenhard, M., Pérez-Alfocea, F. & Fernie, A. R. Multi-omics approach reveals the contribution of KLU to leaf longevity and drought tolerance. Plant Physiology 185, 352–368 (2021).
16.
Journal Article
Jorge, T. F., Ramalho, J. C., Alseekh, S., Pais, I. P., Leitão, A. E., Rodrigues, A. P., Scotti-Campos, P., Ribeiro-Barros, A. I., Fernie, A. R. & António, C. Will Casuarina glauca Stress Resilience Be Maintained in the Face of Climate Change? Metabolites 11, (2021).
17.
Journal Article
Krahmer, J., Abbas, A., Mengin, V., Ishihara, H., Romanowski, A., Furniss, J. J., Moraes, T. A., Krohn, N., Annunziata, M. G., Feil, R., Alseekh, S., Obata, T., Fernie, A. R., Stitt, M. & Halliday, K. J. Phytochromes control metabolic flux, and their action at the seedling stage determines adult plant biomass. Journal of Experimental Botany 72, 3263–3278 (2021).
18.
Journal Article
Kroc, M., Tomaszewska, M., Czepiel, K., Bitocchi, E., Oppermann, M., Neumann, K., Guasch, L., Bellucci, E., Alseekh, S., Graner, A., Fernie, A. R., Papa, R. & Susek, K. Towards Development, Maintenance, and Standardized Phenotypic Characterization of Single-Seed-Descent Genetic Resources for Lupins. Current Protocols in Plant Biology 1, (2021).
19.
Journal Article
Omidbakhshfard, M. A., Sokolowska, E., Di Vittori, V., de Souza, L. P., Kuhalskaya, A., Brotman, Y., Alseekh, S., Fernie, A. R. & Skirycz, A. Multi-omics analysis of early leaf development in Arabidopsis thaliana. Patterns 2, (2021).
20.
Journal Article
Ren, Y., Li, M., Guo, S., Sun, H., Zhao, J., Zhang, J., Liu, G., He, H., Tian, S., Yu, Y., Gong, G., Zhang, H., Zhang, X., Alseekh, S., Fernie, A. R., Scheller, H. V. & Xu, Y. Evolutionary Gain of Oligosaccharide Hydrolysis and Sugar Transport Enhanced Carbohydrate Partitioning in Sweet Watermelon Fruits. The Plant Cell 33, 1554–1573 (2021).
Go to Editor View