Publications of S. Alseekh

Journal Article (109)

1.
Journal Article
Fernie, A. R. & Alseekh, S. Unravelling the molecular networks that regulate kiwifruit flavor. New Phytologist 233, 8–10 (2022).
2.
Journal Article
Fadoul, H. E., Rivas, F. J. M., Neumann, K., Balazadeh, S., Fernie, A. R. & Alseekh, S. Comparative molecular and metabolic profiling of two contrasting wheat cultivars under drought stress. International Journal of Molecular Sciences 22, (2021).
3.
Journal Article
Joshi, J., Hasnain, G., Logue, T., Lynch, M., Wu, S., Guan, J. C., Alseekh, S., Fernie, A. R., Hanson, A. D. & McCarty, D. R. A Core Metabolome Response of Maize Leaves Subjected to Long-Duration Abiotic Stresses. Metabolites 11, (2021).
4.
Journal Article
Zhu, F., Alseekh, S., Wen, W., Cheng, Y. & Fernie, A. R. Genome-wide association studies of Arabidopsis dark-induced senescence reveals signatures of autophagy in metabolic reprogramming. Autophagy (2021). doi:10.1080/15548627.2021.2003041
5.
Journal Article
Wang, J. Y., Alseekh, S., Xiao, T., Ablazov, A., de Souza, L. P., Fiorilli, V., Anggarani, M., Lin, P.-Y., Votta, C., Novero, M., Jamil, M., Lanfranco, L., Hsing, Y.-I. C., Blilou, I., Fernie, A. & Al-Babili, S. Multi-omics approaches explain the growth-promoting effect of the apocarotenoid growth regulator zaxinone in rice. Communications Biology 4, (2021).
6.
Journal Article
Zhu, F., Alseekh, S., Koper, K., Tong, H., Nikoloski, Z., Naake, T., Liu, H., Yan, J., Brotman, Y., Wen, W., Maeda, H., Cheng, Y. & Fernie, A. R. Genome-wide association of the metabolic shifts underpinning dark-induced senescence in Arabidopsis. The Plant Cell (2021). doi:10.1093/plcell/koab251
7.
Journal Article
Aarabi, F., Rakpenthai, A., Barahimipour, R., Gorka, M., Alseekh, S., Zhang, Y. J., Salem, M. A., Brückner, F., Omranian, N., Watanabe, M., Nikoloski, Z., Giavalisco, P., Tohge, T., Graf, A., Fernie, A. R. & Hoefgen, R. Sulfur Deficiency Induced genes affect seed protein accumulation and composition under sulfate deprivation. Plant Physiology 187, 2419–2434 (2021).
8.
Journal Article
Bellucci, E., Aguilar, O. M., Alseekh, S., Bett, K., Brezeanu, C., Cook, D., De la Rosa, L., Delledonne, M., Dostatny, D. F., Ferreira, J. J., Geffroy, V., Ghitarrini, S., Kroc, M., Kumar Agrawal, S., Logozzo, G., Marino, M., Mary-Huard, T., McClean, P., Meglič, V., Messer, T., Muel, F., Nanni, L., Neumann, K., Servalli, F., Străjeru, S., Varshney, R. K., Vasconcelos, M. W., Zaccardelli, M., Zavarzin, A., Bitocchi, E., Frontoni, E., Fernie, A. R., Gioia, T., Graner, A., Guasch, L., Prochnow, L., Opperman, M., Susek, K., Tenaillon, M. & Papa, R. The INCREASE project: Intelligent Collections of Food-Legume Genetic Resources for European Agrofood Systems. The Plant Journal 108, 646–660 (2021).
9.
Journal Article
Alseekh, S., Aharoni, A., Brotman, Y., Contrepois, K., D’Auria, J., Ewald, J., C. Ewald, J., Fraser, P. D., Giavalisco, P., Hall, R. D., Heinemann, M., Link, H., Luo, J., Neumann, S., Nielsen, J., de Souza, L. P., Saito, K., Sauer, U., Schroeder, F. C., Schuster, S., Siuzdak, G., Skirycz, A., Sumner, L. W., Snyder, M. P., Tang, H., Tohge, T., Wang, Y., Wen, W., Wu, S., Xu, G., Zamboni, N. & Fernie, A. R. Mass spectrometry-based metabolomics: a guide for annotation, quantification and best reporting practices. Nature Methods 18, 747–756 (2021).
10.
Journal Article
Duarte, G. T., Pandey, P. K., Vaid, N., Alseekh, S., Fernie, A. R., Nikoloski, Z. & Laitinen, R. Plasticity of rosette size in response to nitrogen availability is controlled by an RCC1-family protein. Plant, Cell and Environment 44, 3398–3411 (2021).
11.
Journal Article
Guadalupe Dominguez, P., Conti, G., Duffy, T., Insani, M., Alseekh, S., Asurmendi, S., Fernie, A. R. & Carrari, F. Multi-omics analyses reveal the roles of the ASR1 transcription factor in tomato fruits. Journal of Experimental Botany 72, 6409–6509 (2021).
12.
Journal Article
Moreno, J. C., Rojas, B. E., Vicente, R., Gorka, M., Matz, T., Kosmacz, M., Peralta-Ariza, J. S., Zhang, Y. J., Alseekh, S., Childs, D., Luzarowski, M., Nikoloski, Z., Zarivach, R., Walther, D., Hartman, M. D., Figueroa, C. M., Iglesias, A. A., Fernie, A. R. & Skirycz, A. Tyr-Asp inhibition of glyceraldehyde 3-phosphate dehydrogenase affects plant redox metabolism. EMBO Journal (2021). doi:10.15252/embj.2020106800
13.
Journal Article
Zimmermann, S. E., Benstein, R. M., Flores-Tornero, M., Blau, S., Anoman, A. D., Rosa-Téllez, S., Gerlich, S. C., Salem, M. A., Alseekh, S., Kopriva, S., Wewer, V., Flügge, U.-I., Jacoby, R. P., Fernie, A. R., Giavalisco, P., Ros, R. & Krueger, S. The phosphorylated pathway of serine biosynthesis links plant growth with nitrogen metabolism. Plant Physiology 186, 1487–1506 (2021).
14.
Journal Article
de Souza, L. P., Alseekh, S., Scossa, F. & Fernie, A. R. Ultra-high-performance liquid chromatography high-resolution mass spectrometry variants for metabolomics research. Nature Methods 18, 733–746 (2021).
15.
Journal Article
Alseekh, S., Kostova, D., Bulut, M. & Fernie, A. R. Genome-wide association studies: assessing trait characteristics in model and crop plants. Cellular and Molecular Life Sciences 78, 5743–5754 (2021).
16.
Journal Article
Breitel, D., Brett, P., Alseekh, S., Fernie, A. R., Butelli, E. & Martin, C. Diverting tyrosine: Data from untargeted metabolic analysis of tomato fruit accumulating L-DOPA. Data in Brief 34, (2021).
17.
Journal Article
Brotman, Y., Llorente-Wiegand, C., Oyong, G., Badoni, S., Misra, G., Anacleto, R., Parween, S., Pasion, E., Tiozon Jr., R. N., Anonuevo, J. J., Krishna deGuzman, M., Alseekh, S., Mbanjo, E. G. N., Boyd, L. A., Fernie, A. R. & Sreenivasulu, N. The genetics underlying metabolic signatures in a brown rice diversity panel and their vital role in human nutrition. The Plant Journal 106, 507–527 (2021).
18.
Journal Article
Bulut, M., Fernie, A. R. & Alseekh, S. Large-scale Multi-omics Genome-wide Association Studies (Mo-GWAS): Guidelines for Sample Preparation and Normalization. Journal of Visualized Experiments 173, (2021).
19.
Journal Article
Fernie, A. R., Alseekh, S., Liu, J. & Yan, J. Using Precision Phenotyping to Inform de novo Domestication. Plant Physiology 186, 1397–1411 (2021).
20.
Journal Article
Jiang, L., Yoshida, T., Stiegert, S., Yu, J., Alseekh, S., Lenhard, M., Pérez-Alfocea, F. & Fernie, A. R. Multi-omics approach reveals the contribution of KLU to leaf longevity and drought tolerance. Plant Physiology 185, 352–368 (2021).
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