Publications of A. Skirycz

Uflewski, M., Rindfleisch, T., Korkmaz, K., Tietz, E., Mielke, S., Correa Galvis, V., Dünschede, B., Luzarowski, M., Skirycz, A., Schwarzländer, M., Strand, D., Hertle, A. P., Schünemann, D., Walther, D., Thalhammer, A., Wolff, M. & Armbruster, U. The thylakoid proton antiporter KEA3 regulates photosynthesis in response to the chloroplast energy status. Nature Communications 15, (2024).

Abrar Hasnat, M., Zupok, A., Gorka, M., Iobbi-Nivol, C., Skirycz, A., Jourlin-Castelli, C., Bier, F., Agarwal, S., Irefo, E. & Leimkühler, S. Iron limitation indirectly reduces the Escherichia coli torCAD operon expression by a reduction of molybdenum cofactor availability. Microbiology Spectrum 12, (2024).

Duque-Jaramillo, A., Ulmer, N., Alseekh, S., Bezrukov, I., Fernie, A. R., Skirycz, A., Karasov, T. L. & Weigel, D. The genetic and physiological basis of Arabidopsis thaliana tolerance to Pseudomonas viridiflava. New Phytologist 240, 1961–1975 (2023).

Figueroa, N. E., Franz, P., Luzarowski, M., Martinez-Seidel, F., Moreno, J. C., Childs, D., Ziemblicka, A., Sampathkumar, A., Andersen, T. G., Tsiavaliaris, G., Kosmacz, M. & Skirycz, A. Protein interactome of 3’,5’-cyclic adenosine monophosphate reveals its role in regulating the actin cytoskeleton. The Plant Journal 115, 1214–1230 (2023).

Luzarowska, U., Ruß, A.-K., Joubès, J., Batsale, M., Szymański, J., Thirumalaikumar, V. P., Luzarowski, M., Wu, S., Zhu, F., Endres, N., Khedhayir, S., Schumacher, J., Jasinska, W., Xu, K., Cordoba, S. M. C., Weil, S., Skirycz, A., Fernie, A. R., Li-Beisson, Y., Fusari, C. M. & Brotman, Y. Hello darkness, my old friend: 3-KETOACYL-COENZYME A SYNTHASE4 is a branch point in the regulation of triacylglycerol synthesis in Arabidopsis thaliana. The Plant Cell 35, 1984–2005 (2023).

Perlikowski, D., Skirycz, A., Marczak, Ł., Lechowicz, K., Augustyniak, A., Michaelis, Ä., Arkadiusz, K. & Kosmala, A. Metabolism of crown tissue is crucial for drought tolerance and recovery after stress cessation in Lolium/Festuca forage grasses. Journal of Experimental Botany 74, 396–414 (2023).

Li, X., Deng, D., Cataltepe, G., Román, Á., Buckley, C. R., Monte Bello, C. C., Skirycz, A., Caldana, C. & Haydon, M. J. A reactive oxygen species Ca2+ signalling pathway identified from a chemical screen for modifiers of sugar-activated circadian gene expression. New Phytologist 236, 1027–1041 (2022).

Tabatabaei, I., Alseekh, S., Shahid, M., Leniak, E., Wagner, M., Mahmoudi, H., Thushar, S., Fernie, A. R., Murphy, K. M., Schmöckel, S. M., Tester, M., Mueller-Roeber, B., Skirycz, A. & Balazadeh, S. The diversity of quinoa morphological traits and seed metabolic composition. Scientific Data 9, (2022).

Alseekh, S., Zhu, F., Vallarino, J. G., Sokolowska, E., Yoshida, T., Bergmann, S., Wendenburg, R., Bolze, A., Skirycz, A., Avin-Wittenberg, T. & Fernie, A. R. Autophagy modulates the metabolism and growth of tomato fruit during development. Horticulture Research 9, (2022).

Skirycz, A. & Fernie, A. R. Past accomplishments and future challenges of the multi-omics characterization of leaf growth. Plant Physiology 189, 473–489 (2022).

Kosmacz, M., Kerber, O., Gorka, M., Moreno, J. C., Maruri-Lopez, I., Minen, R. I., Sampathkumar, A., Nelson, A. D. L. & Skirycz, A. 2 ',3 '-cAMP treatment mimics the stress molecular response in Arabidopsis thaliana. Plant Physiology 188, 1966–1978 (2022).

Perlikowski, D., Lechowicz, K., Skirycz, A., Eckhardt, Ä., Pawłowicz, I. & Kosmala, A. The Role of Triacylglycerol in the Protection of Cells against Lipotoxicity under Drought in Lolium multiflorum/Festucaarundinacea Introgression Forms. Plant and Cell Physiology 63, 353–368 (2022).

Skirycz, A., Caldana, C. & Fernie, A. R. Regulation of Plant Primary Metabolism - How Results From Novel Technologies Are Extending Our Understanding From Classical Targeted Approaches. Critical Reviews in Plant Sciences 41, 32–51 (2022).

Mi, J., Vallarino, J. G., Petřík, I., Novák, O., Correa, S. M., Kosmacz, M., Havaux, M., Rodriguez-Concepcion, M., Al-Babili, S., Fernie, A. R., Skirycz, A. & Moreno, J. C. A manipulation of carotenoid metabolism influence biomass partitioning and fitness in tomato. Metabolic Engineering 70, 166–180 (2022).

Schlossarek, D., Luzarowski, M., Sokolowska, E., Thirumalaikumar, V. P., Dengler, L., Willmitzer, L., Ewald, J. C. & Skirycz, A. Rewiring of the protein–protein–metabolite interactome during the diauxic shift in yeast. Cellular and Molecular Life Sciences 79, (2022).

Calderan-Rodrigues, M. J., Luzarowski, M., Monte Bello, C. C., Minen, R. I., Zühlke, B. M., Nikoloski, Z., Skirycz, A. & Caldana, C. Proteogenic Dipeptides Are Characterized by Diel Fluctuations and Target of Rapamycin Complex-Signaling Dependency in the Model Plant Arabidopsis thaliana. Frontiers in Plant Science 12, (2021).

Wagner, M., Zhang, B., Tauffenberger, A., Schroeder, F. C. & Skirycz, A. Experimental methods for dissecting the terraincognita of protein-metabolite interactomes. Current Opinion in Systems Biology 28, (2021).

Omini, J., Wojciechowska, I., Skirycz, A., Moriyama, H. & Obata, T. Association of the malate dehydrogenase-citrate synthase metabolon is modulated by intermediates of the Krebs tricarboxylic acid cycle. Scientific Reports 11, (2021).

Schlossarek, D., Luzarowski, M., Sokolowska, E., Gorka, M., Willmitzer, L. & Skirycz, A. PROMISed: A novel web-based tool to facilitate analysis and visualization of the molecular interaction networks from co-fractionation mass spectrometry (CF-MS) experiments. Computational and Structural Biotechnology Journal 19, 5117–5125 (2021).

Alseekh, S., Aharoni, A., Brotman, Y., Contrepois, K., D’Auria, J., Ewald, J., C. Ewald, J., Fraser, P. D., Giavalisco, P., Hall, R. D., Heinemann, M., Link, H., Luo, J., Neumann, S., Nielsen, J., de Souza, L. P., Saito, K., Sauer, U., Schroeder, F. C., Schuster, S., Siuzdak, G., Skirycz, A., Sumner, L. W., Snyder, M. P., Tang, H., Tohge, T., Wang, Y., Wen, W., Wu, S., Xu, G., Zamboni, N. & Fernie, A. R. Mass spectrometry-based metabolomics: a guide for annotation, quantification and best reporting practices. Nature Methods 18, 747–756 (2021).