Publications of A. Skirycz

Journal Article (55)

1.
Journal Article
Tabatabaei, I., Alseekh, S., Shahid, M., Leniak, E., Wagner, M., Mahmoudi, H., Thushar, S., Fernie, A. R., Murphy, K. M., Schmöckel, S. M., Tester, M., Mueller-Roeber, B., Skirycz, A. & Balazadeh, S. The diversity of quinoa morphological traits and seed metabolic composition. Scientific Data 9, (2022).
2.
Journal Article
Alseekh, S., Zhu, F., Vallarino, J. G., Sokolowska, E., Yoshida, T., Bergmann, S., Wendenburg, R., Bolze, A., Skirycz, A., Avin-Wittenberg, T. & Fernie, A. R. Autophagy modulates the metabolism and growth of tomato fruit during development. Horticulture Research (2022). doi:10.1093/hr/uhac129
3.
Journal Article
Skirycz, A. & Fernie, A. R. Past accomplishments and future challenges of the multi-omics characterization of leaf growth. Plant Physiology 189, 473–489 (2022).
4.
Journal Article
Kosmacz, M., Kerber, O., Gorka, M., Moreno, J. C., Maruri-Lopez, I., Minen, R. I., Sampathkumar, A., Nelson, A. D. L. & Skirycz, A. 2 ',3 '-cAMP treatment mimics the stress molecular response in Arabidopsis thaliana. Plant Physiology 188, 1966–1978 (2022).
5.
Journal Article
Perlikowski, D., Lechowicz, K., Skirycz, A., Eckhardt, Ä., Pawłowicz, I. & Kosmala, A. The Role of Triacylglycerol in the Protection of Cells against Lipotoxicity under Drought in Lolium multiflorum/Festucaarundinacea Introgression Forms. Plant and Cell Physiology 63, 353–368 (2022).
6.
Journal Article
Skirycz, A., Caldana, C. & Fernie, A. R. Regulation of Plant Primary Metabolism - How Results From Novel Technologies Are Extending Our Understanding From Classical Targeted Approaches. Critical Reviews in Plant Sciences (2022). at <http://hdl.handle.net/21.11116/0000-000A-2E74-1>
7.
Journal Article
Mi, J., Vallarino, J. G., Petřík, I., Novák, O., Correa, S. M., Kosmacz, M., Havaux, M., Rodriguez-Concepcion, M., Al-Babili, S., Fernie, A. R., Skirycz, A. & Moreno, J. C. A manipulation of carotenoid metabolism influence biomass partitioning and fitness in tomato. Metabolic Engineering 70, 166–180 (2022).
8.
Journal Article
Calderan-Rodrigues, M. J., Luzarowski, M., Monte Bello, C. C., Minen, R. I., Zühlke, B. M., Nikoloski, Z., Skirycz, A. & Caldana, C. Proteogenic Dipeptides Are Characterized by Diel Fluctuations and Target of Rapamycin Complex-Signaling Dependency in the Model Plant Arabidopsis thaliana. Frontiers in Plant Science 12, (2021).
9.
Journal Article
Wagner, M., Zhang, B., Tauffenberger, A., Schroeder, F. C. & Skirycz, A. Experimental methods for dissecting the terraincognita of protein-metabolite interactomes. Current Opinion in Systems Biology 28, (2021).
10.
Journal Article
Omini, J., Wojciechowska, I., Skirycz, A., Moriyama, H. & Obata, T. Association of the malate dehydrogenase-citrate synthase metabolon is modulated by intermediates of the Krebs tricarboxylic acid cycle. Scientific Reports 11, (2021).
11.
Journal Article
Schlossarek, D., Luzarowski, M., Sokolowska, E., Gorka, M., Willmitzer, L. & Skirycz, A. PROMISed: A novel web-based tool to facilitate analysis and visualization of the molecular interaction networks from co-fractionation mass spectrometry (CF-MS) experiments. Computational and Structural Biotechnology Journal 19, 5117–5125 (2021).
12.
Journal Article
Alseekh, S., Aharoni, A., Brotman, Y., Contrepois, K., D’Auria, J., Ewald, J., C. Ewald, J., Fraser, P. D., Giavalisco, P., Hall, R. D., Heinemann, M., Link, H., Luo, J., Neumann, S., Nielsen, J., de Souza, L. P., Saito, K., Sauer, U., Schroeder, F. C., Schuster, S., Siuzdak, G., Skirycz, A., Sumner, L. W., Snyder, M. P., Tang, H., Tohge, T., Wang, Y., Wen, W., Wu, S., Xu, G., Zamboni, N. & Fernie, A. R. Mass spectrometry-based metabolomics: a guide for annotation, quantification and best reporting practices. Nature Methods 18, 747–756 (2021).
13.
Journal Article
Moreno, J. C., Rojas, B. E., Vicente, R., Gorka, M., Matz, T., Kosmacz, M., Peralta-Ariza, J. S., Zhang, Y. J., Alseekh, S., Childs, D., Luzarowski, M., Nikoloski, Z., Zarivach, R., Walther, D., Hartman, M. D., Figueroa, C. M., Iglesias, A. A., Fernie, A. R. & Skirycz, A. Tyr-Asp inhibition of glyceraldehyde 3-phosphate dehydrogenase affects plant redox metabolism. EMBO Journal (2021). doi:10.15252/embj.2020106800
14.
Journal Article
Cheong, B. E., Beine-Golovchuk, O., Gorka, M., Ho, W. W. H., Martinez-Seidel, F., Firmino, A. A. P., Skirycz, A., Roessner, U. & Kopka, J. Arabidopsis REI-LIKE proteins activate ribosome biogenesis during cold acclimation. Scientific Reports 11, (2021).
15.
Journal Article
Friedrich, T., Oberkofler, V., Trindade, I., Altmann, S., Brzezinka, K., Lämke, J., Gorka, M., Kappel, C., Sokolowska, E., Skirycz, A., Graf, A. & Bäurle, I. Heteromeric HSFA2/HSFA3 complexes drive transcriptional memory after heat stress in Arabidopsis. Nature Communications 12, (2021).
16.
Journal Article
Ginsawaeng, O., Gorka, M., Erban, A., Heise, C., Brueckner, F., Hoefgen, R., Kopka, J., Skirycz, A., Hincha, D. K. & Zuther, E. Characterization of the Heat-Stable Proteome during Seed Germination in Arabidopsis with Special Focus on LEA Proteins. International Journal of Molecular Sciences 22, (2021).
17.
Journal Article
Luzarowski, M., Vicente, R., Kiselev, A., Wagner, M., Schlossarek, D., Erban, A., de Souza, L. P., Childs, D., Wojciechowska, I., Luzarowska, U., Gorka, M., Sokolowska, E., Kosmacz, M., Moreno, J. C., Brzezinska, A., Vegesna, B., Kopka, J., Fernie, A. R., Willmitzer, L., Ewald, J. C. & Skirycz, A. Global mapping of protein–metabolite interactions in Saccharomyces cerevisiae reveals that Ser-Leu dipeptide regulates phosphoglycerate kinase activity. Communications Biology 4, (2021).
18.
Journal Article
Martinez-Seidel, F., Beine-Golovchuk, O., Hsieh, Y.-C., El Eshraky, K., Gorka, M., Cheong, B.-E., Jimenez‐posada, E. V., Walther, D., Skirycz, A., Roessner, U., Kopka, J. & Firmino, A. A. P. Spatially enriched paralog rearrangements argue functionally diverse ribosomes arise during cold acclimation in arabidopsis. International Journal of Molecular Sciences 22, (2021).
19.
Journal Article
Omidbakhshfard, M. A., Sokolowska, E., Di Vittori, V., de Souza, L. P., Kuhalskaya, A., Brotman, Y., Alseekh, S., Fernie, A. R. & Skirycz, A. Multi-omics analysis of early leaf development in Arabidopsis thaliana. Patterns 2, (2021).
20.
Journal Article
Razaghi-Moghadam, Z., Sokolowska, E., Sowa, M. A., Skirycz, A. & Nikoloski, Z. Combination of network and molecule structure accurately predicts competitive inhibitory interactions. Computational and Structural Biotechnology Journal 19, 2170–2178 (2021).
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