Publications of A. Skirycz

Journal Article (46)

1.
Journal Article
Schlossarek, D., Luzarowski, M., Sokolowska, E., Gorka, M., Willmitzer, L. & Skirycz, A. PROMISed: A novel web-based tool to facilitate analysis and visualization of the molecular interaction networks from co-fractionation mass spectrometry (CF-MS) experiments. Computational and Structural Biotechnology Journal 19, 5117–5125 (2021).
2.
Journal Article
Alseekh, S., Aharoni, A., Brotman, Y., Contrepois, K., D’Auria, J., Ewald, J., C. Ewald, J., Fraser, P. D., Giavalisco, P., Hall, R. D., Heinemann, M., Link, H., Luo, J., Neumann, S., Nielsen, J., de Souza, L. P., Saito, K., Sauer, U., Schroeder, F. C., Schuster, S., Siuzdak, G., Skirycz, A., Sumner, L. W., Snyder, M. P., Tang, H., Tohge, T., Wang, Y., Wen, W., Wu, S., Xu, G., Zamboni, N. & Fernie, A. R. Mass spectrometry-based metabolomics: a guide for annotation, quantification and best reporting practices. Nature Methods 18, 747–756 (2021).
3.
Journal Article
Moreno, J. C., Rojas, B. E., Vicente, R., Gorka, M., Matz, T., Kosmacz, M., Peralta-Ariza, J. S., Zhang, Y. J., Alseekh, S., Childs, D., Luzarowski, M., Nikoloski, Z., Zarivach, R., Walther, D., Hartman, M. D., Figueroa, C. M., Iglesias, A. A., Fernie, A. R. & Skirycz, A. Tyr-Asp inhibition of glyceraldehyde 3-phosphate dehydrogenase affects plant redox metabolism. EMBO Journal (2021). doi:10.15252/embj.2020106800
4.
Journal Article
Cheong, B. E., Beine-Golovchuk, O., Gorka, M., Ho, W. W. H., Martinez-Seidel, F., Firmino, A. A. P., Skirycz, A., Roessner, U. & Kopka, J. Arabidopsis REI-LIKE proteins activate ribosome biogenesis during cold acclimation. Scientific Reports 11, (2021).
5.
Journal Article
Friedrich, T., Oberkofler, V., Trindade, I., Altmann, S., Brzezinka, K., Lämke, J., Gorka, M., Kappel, C., Sokolowska, E., Skirycz, A., Graf, A. & Bäurle, I. Heteromeric HSFA2/HSFA3 complexes drive transcriptional memory after heat stress in Arabidopsis. Nature Communications 12, (2021).
6.
Journal Article
Ginsawaeng, O., Gorka, M., Erban, A., Heise, C., Brueckner, F., Hoefgen, R., Kopka, J., Skirycz, A., Hincha, D. K. & Zuther, E. Characterization of the Heat-Stable Proteome during Seed Germination in Arabidopsis with Special Focus on LEA Proteins. International Journal of Molecular Sciences 22, (2021).
7.
Journal Article
Luzarowski, M., Vicente, R., Kiselev, A., Wagner, M., Schlossarek, D., Erban, A., de Souza, L. P., Childs, D., Wojciechowska, I., Luzarowska, U., Gorka, M., Sokolowska, E., Kosmacz, M., Moreno, J. C., Brzezinska, A., Vegesna, B., Kopka, J., Fernie, A. R., Willmitzer, L., Ewald, J. C. & Skirycz, A. Global mapping of protein–metabolite interactions in Saccharomyces cerevisiae reveals that Ser-Leu dipeptide regulates phosphoglycerate kinase activity. Communications Biology 4, (2021).
8.
Journal Article
Martinez-Seidel, F., Beine-Golovchuk, O., Hsieh, Y.-C., El Eshraky, K., Gorka, M., Cheong, B.-E., Jimenez‐posada, E. V., Walther, D., Skirycz, A., Roessner, U., Kopka, J. & Firmino, A. A. P. Spatially enriched paralog rearrangements argue functionally diverse ribosomes arise during cold acclimation in arabidopsis. International Journal of Molecular Sciences 22, (2021).
9.
Journal Article
Omidbakhshfard, M. A., Sokolowska, E., Di Vittori, V., de Souza, L. P., Kuhalskaya, A., Brotman, Y., Alseekh, S., Fernie, A. R. & Skirycz, A. Multi-omics analysis of early leaf development in Arabidopsis thaliana. Patterns 2, (2021).
10.
Journal Article
Razaghi-Moghadam, Z., Sokolowska, E., Sowa, M. A., Skirycz, A. & Nikoloski, Z. Combination of network and molecule structure accurately predicts competitive inhibitory interactions. Computational and Structural Biotechnology Journal 19, 2170–2178 (2021).
11.
Journal Article
Schlossarek, D., Luzarowski, M., Sokolowska, E., Gorka, M., Willmitzer, L. & Skirycz, A. PROMISed: A novel web-based tool to facilitate analysis and visualization of the molecular interaction networks from co-fractionation mass spectrometry (CF-MS) experiments. Computational and Structural Biotechnology Journal (2021). doi:10.1016/j.csbj.2021.08.042
12.
Journal Article
Thirumalaikumar, V. P., Wagner, M., Balazadeh, S. & Skirycz, A. Autophagy is responsible for the accumulation of proteogenic dipeptides in response to heat stress in Arabidopsis thaliana. The FEBS Journal 288, 281–292 (2021).
13.
Journal Article
Uflewski, M., Mielke, S., Correa Galvis, V., von Bismarck, T., Chen, X., Tietz, E., Ruß, J., Luzarowski, M., Sokolowska, E., Skirycz, A., Eirich, J., Finkemeier, I., Schöttler, M. A. & Armbruster, U. Functional characterization of proton antiport regulation in the thylakoid membrane. Plant Physiology (2021). doi:10.1093/plphys/kiab135
14.
Journal Article
Chodasiewicz, M., Sokolowska, E., Nelson-Dittrich, A. C., Masiuk, A., Moreno, J. C., Nelson, A. D. L. & Skirycz, A. Identification and Characterization of the Heat-Induced Plastidial Stress Granules Reveal New Insight Into Arabidopsis Stress Response. Frontiers in Plant Science 11, (2020).
15.
Journal Article
Firmino, A. A. P., Gorka, M., Graf, A., Skirycz, A., Martinez-Seidel, F., Zander, K., Kopka, J. & Beine-Golovchuk, O. Separation and paired proteome profiling of plant chloroplast and cytoplasmic ribosomes. Plants 9, (2020).
16.
Journal Article
Kosmacz, M. & Skirycz, A. The Isolation of Stress Granules From Plant Material. Current Protocols in Plant Biology 5, (2020).
17.
Journal Article
Kosmacz, M., Sokolowska, E., Bouzaa, S. & Skirycz, A. Towards a functional understanding of the plant metabolome. Current Opinion in Plant Biology 55, 47–51 (2020).
18.
Journal Article
Lechowicz, K., Pawłowicz, I., Perlikowski, D., Arasimowicz-Jelonek, M., Blicharz, S., Skirycz, A., Augustyniak, A., Malinowski, R., Rapacz, M. & Kosmala, A. Adjustment of Photosynthetic and Antioxidant Activities to Water Deficit Is Crucial in the Drought Tolerance of Lolium multiflorum/Festuca arundinacea Introgression Forms. International Journal of Molecular Sciences 21, (2020).
19.
Journal Article
Perlikowski, D., Augustyniak, A., Skirycz, A., Pawłowicz, I., Masajada, K., Eckhardt, Ä. & Kosmala, A. Efficient root metabolism improves drought resistance of Festuca arundinacea. Plant and Cell Physiology 61, 492–504 (2020).
20.
Journal Article
Thirumalaikumar, V. P., Gorka, M., Schulz, K., Masclaux-Daubresse, C., Sampathkumar, A., Skirycz, A., Vierstra, R. D. & Balazadeh, S. Selective autophagy regulates heat stress memory in Arabidopsis by NBR1-mediated targeting of HSP90 and ROF1. Autophagy (2020). doi:10.1080/15548627.2020.1820778
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