Publications of YJ Zhang

Giese, J., Eirich, J., Walther, D., Zhang, Y. J., Lassowskat, I., Fernie, A. R., Elsässer, M., Maurino, V. G., Schwarzländer, M. & Finkemeier, I. The interplay of post-translational protein modifications in Arabidopsis leaves during photosynthesis induction. The Plant Journal 116, 1172–1193 (2023).

Qiu, H., Zhang, X., Zhang, Y. J., Jiang, X., Ren, Y., Gao, D., Zhu, X., Usadel, B., Fernie, A. R. & Wen, W. Depicting the genetic and metabolic panorama of chemical diversity in the tea plant. Plant Biotechnology Journal (2023). doi:10.1111/pbi.14241

Su, C., Kokosza, A., Xie, X., Pěnčík, A., Zhang, Y. J., Raumonen, P., Shi, X., Muranen, S., Topcu, M. K., Immanen, J., Hagqvist, R., Safronov, O., Alonso-Serra, J., Eswaran, G., Venegas, M. P., Ljung, K., Ward, S., Mähönen, A. P., Himanen, K., Salojärvi, J., Fernie, A. R., Novák, O., Leyser, O., Pałubicki, W., Helariutta, Y. & Nieminen, K. Tree architecture: A strigolactone-deficient mutant reveals a connection between branching order and auxin gradient along the tree stem. Proceedings of the National Academy of Sciences of the United States of America 120, (2023).

Zhang, Y. J., Martinez-Jaime, S., Bulut, M., Graf, A. & Fernie, A. R. The conditional mitochondrial protein complexome in Arabidopsis thaliana root and shoot. Plant Communications 4, (2023).

Fernie, A. R. & Zhang, Y. J. Observations and implication of thermal tolerance in the Arabidopsis proteome. Cell Systems 14, 819–821 (2023).

Shan, N., Zhang, Y. J., Guo, Y., Zhang, W., Nie, J., Fernie, A. R. & Sui, X. Cucumber malate decarboxylase, CsNADP-ME2, functions in the balance of carbon and amino acid metabolism in fruit. Horticulture Research (2023). doi:10.1093/hr/uhad216

Siqueira, J. A., Zhang, Y. J., Nunes-Nesi, A., Fernie, A. R. & Araújo, W. L. Beyond photorespiration: the significance of glycine and serine in leaf metabolism. Trends in Plant Science 28, 1092–1094 (2023).

Wan, H., Zhang, Y. J., Wu, L., Zhou, G., Pan, L., Fernie, A. R. & Ruan, Y.-L. Evolution of cytosolic and organellar invertases empowered the colonization and thriving of land plants. Plant Physiology 193, 1227–1243 (2023).

Zhang, Y. J. & Fernie, A. R. Leveraging glycoside-targeted metabolomics to gain insight into biological function. Trends in Plant Science 28, 737–739 (2023).

Jia, Z.-C., Das, D., Zhang, Y. J., Fernie, A. R., Liu, Y.-G., Chen, M. & Zhang, J. Plant serine/arginine-rich proteins: versatile players in RNA processing. Planta 257, (2023).

Zhang, Y. J., Chen, M., Liu, T., Qin, K. & Fernie, A. R. Investigating the dynamics of protein-protein interactions in plants. The Plant Journal 114, 965–983 (2023).

Chen, Y., Wang, Y., Liang, X., Zhang, Y. J. & Fernie, A. R. Mass spectrometric exploration of phytohormone profiles and signaling networks. Trends in Plant Science 28, 399–414 (2023).

Natale, R., Coppola, M., D'Agostino, N., Zhang, Y. J., Fernie, A. R., Castaldi, V. & Rao, R. In silico and in vitro approaches allow the identification of the Prosystemin molecular network. Computational and Structural Biotechnology Journal 21, 212–223 (2023).

Zhang, Y. J., Wiese, L., Fang, H., Alseekh, S., de Souza, L. P., Scossa, F., Molloy, J., Christmann, M. & Fernie, A. R. Synthetic biology identifies the minimal gene set required for Paclitaxel biosynthesis in a plant chassis. Molecular Plant (2023). doi:10.1016/j.molp.2023.10.016

Zhang, Y. J. & Fernie, A. R. Metabolite profiling of Arabidopsis mutants of lower glycolysis. Scientific Data 9, (2022).

Zhang, Y. J. & Fernie, A. R. Dynamically regulating metabolic fluxes with synthetic metabolons. Trends in Biotechnology 40, 1019–1020 (2022).

Stefan, T., Wu, X. N., Zhang, Y. J., Fernie, A. R. & Schulze, W. X. Regulatory Modules of Metabolites and Protein Phosphorylation in Arabidopsis Genotypes With Altered Sucrose Allocation. Frontiers in Plant Science 13, (2022).

Amanda, D., Frey, F. P., Neumann, U., Przybyl, M., Šimura, J., Zhang, Y. J., Chen, Z., Gallavotti, A., Fernie, A. R., Ljung, K. & Acosta, I. F. Auxin boosts energy generation pathways to fuel pollen maturation in barley. Current Biology 32, 1798–1811 (2022).

Fernie, A. R. & Zhang, Y. J. The Bacillus subtilis glutamate anti-metabolon. Nature Metabolism 4, 161–162 (2022).

Qin, K., Fernie, A. R. & Zhang, Y. J. The assembly of super-complexes in the plant chloroplast. Biomolecules 11, (2021).